Array 1 35762-36401 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYV01000004.1 Lactobacillus intestinalis strain NM61_E11 NODE_4_length_128294_cov_375.494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35762 29 96.6 32 ............................A AAGTGTTGTAGCTGGCCACCCGGCTATTTTAG 35823 29 100.0 32 ............................. TACCGACCCTGACTTAATTAAAGCAATCAATG 35884 29 96.6 32 ............................C AACAGCACTTTCTTTACCATAATCATCACTTG 35945 29 100.0 32 ............................. AATACATTCCATGACCAGCATACACACCAACA 36006 29 96.6 32 ............................C AAAAATCTTGCAGAAAAAATGCAAGGTTTGTA 36067 29 100.0 32 ............................. GTTATATGGAAAAATGTTCAAGTAGGTAGTTA 36128 29 100.0 32 ............................. TTTGAAAATTTCCACAATCCTACAATTTTTCA 36189 29 100.0 32 ............................. AATGAATTCATGATAGCTCTACCTTGATCTGC 36250 29 100.0 32 ............................. CAATATAATCAGTCTTTAGCCAATGCTGAGGG 36311 29 100.0 32 ............................. TATTCAGCGTCTTTATCTTCAGTAGTGAAGAT 36372 29 86.2 0 .....................T..T.TT. | A [36393] ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATTGAAGGCTGCTAATCGTGAAAAAACTCAAAATAATCCACTAGAGCTTGCGATGGATTTACCTGAGTCAACATGACCTAGTTTATTCAAACTTGGACCATAATCTTAAGGTAGTCAATGAGGACTTTTTTTATTTTAATATGGCGGTCAATTTTCTAATAAAAAAATTGCTCCTTTTCTTTCAGAAAGAGGGTATGGCCCAATCTCCAATTGCTCGGTGAAATTATTGCTGAAGATGGTAGTTGATAAAAGTGATGCGGAAATTGTATAGTTCAATAGATGTAGTAAAAGCCCTAACTTGTAATAATGATCTTCATAAGAGTGCTTGTATTTTCTAATTATTTAATATAATAATTTAAGATTGTTATTATATGAGATAGCTATATATAGAAGAATATTTGATATAATTGAGTCGATGATTTGATGGGGAGGAAGTACAAACTAAAGAAAAATTGCTTTTCAGCAAATTTGAAATGGCTTAATGACGGCGTTTCTTTAGT # Right flank : TTGAGGATGAGTCCTCAACAAGAAAAATTATAGAGCTATCAACATGATTTCCTAAAGGTTGTTTATGGAAAATCACTCTAAATGTCTCTAAAATGAAGATGACATGGATAGAAAGGGAGAACAATTATGAACGCAATTTTTGAAAGAAGAGCTGTTAGAGAGTATAGGGATCAAAAAGTTGATGATGAGAAAATCAAGAAACTAATTGAATCTTTTCAAGCAGCTCCGTGTGCACTCCATCAAACGGATGTGATGGAATTAAGTGTAATTACGGTTCCTGAATTGTTGAAAAAGTTAGAAGAAAAGACTAAGAATTCGTGTTATAACGCACCTTTGGTATTTATGATTAATACTAAAAAAGATAGTCAATTTGGTGAGAGGGATGCTTTTGTTGCTGCTGAAAATGTGATGGTTGAAGCATTTGACTTAGGCTTAGCTTCAGTTTACGTAATGGGTGGTGTAATCGCTCTTAATAAATTTCCAGATTTACAAAAAGAATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29189-29339 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYV01000003.1 Lactobacillus intestinalis strain NM61_E11 NODE_3_length_150415_cov_390.169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29189 29 100.0 32 ............................. TTGACGCTTAGACTTACCGGATTGCTTAGACA 29250 29 100.0 32 ............................. TTGTGTCCCATCCACGGAAACGTTAGAATGCT 29311 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTATTCCCCACGTAGGTGGGGGTGATCCT # Left flank : CTAGAGAACGTTATGGCGATAAGGAAAAATAAATTAATCTGAATTGAAAGGTATGATAATTATGGAACTAGGAAAAGTTGCCCAAGTAAATTTAGATTTAGTTGATAACATTGATAATTGGAATTTTGATAAGTTAAAGTGTGCTAAACTACAAGAAGTAGGAATTGAAAAATCAATTATATATTTAGATAAAAAGAGTAGCCAACTTTTTATCACTTTAGATGTGAGAGATTTTAAATCTTATCAGAAATTGTCTACTCAATATCAGAATGCATGGTGGTCACATCTAGAACCGTTGCCTAGTATAGATGGTAAAAGCCTTTTGGATTATACTTGGCATGAAGTATTTAAAATTGAAGATGATGAATAAGACTAAGGAGTGAAAAATTTCACTTCTTTTTTAGGGGGAGAAAGAGCAAAATATGATATTTTAAATATAAAGTAAATAAATTTGAGGGTATAATAAGAAATGATTATTGATATGACGGGCTTTTTTTAGT # Right flank : TAATTTCATATCGTTAACTCTCTTTTCTTAAAAAACTTCACAAACAACAATTTACCTATGTACCAGTAGTTTGATAAATATTTCTCACAAGGGTAATACAAAAATTTTTCACAAACTATATATAAAGATTGGTATAAAAAAAGACGCTGATTATTCAGCGTCTTCAAATGTTTACTTTTTATTTTAATATGAGAACGACGGGAATTGAACCCATATCTTCCCTAAAAACTAGGGCTGTCTTCCCCGTTAGACGACTTATTCTCAATTTCTATTATTCCATATTTTCTTAACCTTAGCAATTATTTGATTCTATTTTTCCGTTGGATAATAGGTACCATTTTCTGAATGATTATATCCAAAAGTATTCCCCACAATACGTGGGAATGATTCTAGCTGATAGAGTGACATTCTCAGTCTTGATATTATTCATCGGCAAACTTCTTTTGCGTGACGGTTAATTTATACTCGTTTGCTTTCTTACGATTTTTGTTCAAAGCTGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTAGGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40381-40592 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYV01000003.1 Lactobacillus intestinalis strain NM61_E11 NODE_3_length_150415_cov_390.169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40381 29 96.6 32 ............................C TAATGGAAGATTGTTTCAGGCTATCGATGAAG 40442 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 40503 29 100.0 32 ............................. AACCAGCAACAACAGCTTCAGGCAAGAATTCT 40564 29 79.3 0 ...........G.AA...A....A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : AAATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAGTTTCTTGATAATTATAAGTTGAGTACAGTATTGTCAGAATATAAAATTGAAAATCAAAACCCGCATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTAGCCTTGAAATTGATTGATGGAGGAAAATTAAAGCTTTAAAGTTTTCACCGGTAATGAATTTAGCTTTAGATAATTTTCAAAATTAATTTGAACCATTGTATACGATCAATTGGGAGAGGTCTTTCTGAGTATTCCGGAATTATGAGTAGTTAAAAATAGGTTTACATTTAAGTAATACTATAACTTGAAAAAGCACTTAAAGAAGTAAAAATATTTGTAATTAGATCTCTATAATTTTATCGGAATATAGGTATGCAATCTAGTATTATGAAAGAAACTAATGAAAATTAGAGATTTTGAATTATAGAAATGGCTATAGATCGGCCTTTGTTTAGT # Right flank : TGGTCTCCCAATGACTCTAAACTTGTGGAAAATTATATTTTTGGAGGTTTCTTCAGATGAAGAAAAAGTGGATTGCTATTTTATTAGCACTAGTTTCTTTAGTAGTATGTGGTACAACAAGTACTCAAAGTGTAAAGGCTAGTACGCCGTCAATTAACTCAAGCTACTGGAAGCGTAATCGCAAAGTAATCGTGACTAGAAATGTAAAGATCTATAAAATGCGTACTGCTACAAGACAAGTAATTAAGTCTAATTCTAAAACTTTAAGGAAAGGCACGATAGTTTTTATAACCAGAAACAAATCTAAAGTTTGGATTTTTAGAGGTAGAATTCCATCCATAGGTGCAGCTTCTTTGAAAGGATATACTTGGGTAGCTGTTCAGAATAATAGTAAATGGATTGCTACTTACAGTAAAAGTAATGTAAAGAAGTACACTAAAAAATCTGTAACATCTTCTAAAACAGTGGCTTATGATGAAGATAATCAAGGAGATGAAGAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 86807-87302 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYV01000003.1 Lactobacillus intestinalis strain NM61_E11 NODE_3_length_150415_cov_390.169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 86807 30 100.0 37 .............................. CGCTCAGCCCCTGCGTATGCTCAAAATCTTGCCCTAG 86874 30 100.0 37 .............................. ATCTCCTTGTTGAAATTTTTAATATGATTTTATATTT 86941 30 100.0 36 .............................. CCTAAATATAACAATATAAAAGATCAATATAATAGA 87007 30 100.0 35 .............................. TCGATTGGACTGCTTTTGCTAATAGCTTTAGGATT 87072 30 100.0 36 .............................. TTTTCTAACACGCGCGTAGTTCGCGGATCCATTGGT 87138 30 100.0 38 .............................. TTTTCCCAGTCAACGGCTGGAACAGCTTCACCCACATA 87206 30 100.0 37 .............................. GATGGTGAATATGTACTTCTTGCTAAACATTTAGGGC 87273 30 86.7 0 ..................G.A...A....C | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 37 GTTTTTATCTAACTTAAGAGGAATGTAAAT # Left flank : AATTTCCAAATTTGGGTCGACGAGAAGATTTGGCAAATTTTGAAGAGGTAAAGATTGTTGATATAGAAGAAAAAGATGAAGATATACCCGTAAATCATAGCGCGTATATACCAGTTCAAATGTCTGAAGATGTGGGTCTAGAAAATGATGGTGTTGGAAATAAAGGGACACATTATTATTTAAATAAGAATTATAAGTTGGTAACAATTAGAAAAGGTCAGACACAACGTCGTTGGAATAAAGTTGAGGCAATATATGCTTCTGGATTTGTAGTTTATAAATCATATGTTGATGAAGATGGCAATGTAGTATTCTTAGTTTAGAGCTGTCGATGTCCAATAATCAATTTTTCACCTGGGATCGACAGGTACTATTAAGCTTGATATGATAGCTTTTCTGAAATTTTATAGTAATTTTTATCAAAAATAGGATTATATTTAAGATGGTCGACAGAATCGGGACTGTAAAGTATTGATTTGTAAGGTCTGTCGAAGGGAACA # Right flank : CGAAACAACAGGATATTAGTTAGTAAAGAAAATTTAGAGAATAGTGATACGAGGTATATTGAAGTGCATCTTGCATTTACTCTATAAAATAGAAAGTGTGGAAAAATGAATGACTATTTAGGTAAGTCTTTAAATCAATCTGAAGGAAATCACTGTGAGACGATTGTAGAACATACTAATAATTTGTTGAGGCAATATAATTTATTGAAACAAACGTATCCTGACATATTTCAAAACTTTTGGCTTTGTCAGAATAAGTTCAATAATATGTTGGAGCAGCCAAATATTCATGGCAAGGATGACTGGCGACTCTTAGAAATTGCTTGTGCATATCATGATTTAGGTAAAATGAATCTACGCTTTCAGAAAAAAGTAAAGGCCGGGAAAAGTTATTGTGAAGATGAAATTCCGCATGCCTTGTTAAGTATTACAATGCTTCCAATTGAGGAGTTGAAAAAACAATATACAAAAGAAGAACTCATAGCCTTAATTTTTGCAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 91814-92172 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRYV01000003.1 Lactobacillus intestinalis strain NM61_E11 NODE_3_length_150415_cov_390.169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 91814 30 100.0 35 .............................. TTTAATGCGTTTGGTACTAGTCGCTTGAGGGTAGT 91879 30 100.0 35 .............................. AAATATACTGTATAGTAGGCAAAGGTATGCCTTGT 91944 30 100.0 36 .............................. GGTTTTTGCCCGTCGTCTCCGCCATTCGGATCATTA 92010 30 96.7 37 ........................A..... AGTATTAAAAATAATATTTTAGTGCTAGCTTATGAAC 92077 30 96.7 36 A............................. GTCCCTAACATCAAGTAAAAAGCGGCTCTCGCATTA 92143 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.4 36 GTTTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GCGTATGAGCCTTACATTATGGGATGGTAGTAATTATGTATATAATTTTGGTTTATGACATTGTAATGGATAAACAAGGCTCTAAAGTAAGTAGACATGTTTTTAAAATTTGTAAAAAATACTTAACTCATGTTCAAAATTCTGTTTTTGAGGGAGAATTAACCAAGGCACAGCTTGCAAGACTGCGAAGTGAATTAAATAGATGGATTAGAAAAGATGTTGATTCAGTAATTATATTTAAAAATAGAAATAAGAATTGGCTTGATAAAGAATTTATGGGACAGGATTTGACTGATTTAACATCGAATATTTTTTAAAATTAATCTGTCGATATGAGATATGTGGAAAAAACACGGAGATCGACAGATGAAAAGAATGCCCGTATAATACTATTGTTGAATTATATCTAATAAGGTAAGTAATCTATATATGCTTTTTCGGTTAGGTCGACAGATATAGCTTTTGAAACTAGTGATATAGCAGGGCTTACGATGGCTAAG # Right flank : TGTTTACTAACACAACACTTATTCTTTCATTCCAAATGTTTTTCATGTTTTTATCTATTCTCTAAAATTCTAACTATAAAAGGAGCTCAAGAAAATTTTCTTGAACTCCTTTTTCTTTTATTTAGGCCAATTCTTAGCTAATTCTTTCAAGAAAGGTTGAATGACCGATCTTTGATTTTTTAGATAAGTACCATACAATTCGATATAATTGTCTTCATCCTTAATAGGTACTAAAATTCGATCATCATCGTCTCTTTCTTTATAACCAGTTGCTAAGGTTAGGTTCGTTCTAAAAACCGGAAAATTGGAATAGTGGGTTAATTCATCTAAAGCTGGCAGATCTTTTTGATATAAAAATTGTGCTTCTGGAATATGATCTTCAATTACTTGAACCCATGGCCCAATATCTTGAACTACTAAGAAGCTCAACCCGGCTAAATCTTTGAAAGTGACACTCTCCTTTTGGGCTAAAGGGTTCATTTTGTCAATGCGAACGGCTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //