Array 1 501949-503441 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZWA01000002.1 Salmonella enterica strain DR-040 NODE_2_length_783095_cov_13.201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 501949 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 502010 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 502071 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 502132 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 502193 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 502254 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 502315 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 502376 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 502437 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 502498 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 502559 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 502620 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 502681 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 502742 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 502803 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 502864 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 502926 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 502987 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 503048 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 503109 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 503170 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 503231 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 503292 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 503353 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 503414 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 519573-521537 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZWA01000002.1 Salmonella enterica strain DR-040 NODE_2_length_783095_cov_13.201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 519573 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 519634 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 519695 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 519756 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 519817 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 519878 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 519939 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 520001 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 520062 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 520123 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 520184 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 520245 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 520306 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 520367 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 520428 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 520489 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 520550 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 520611 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 520672 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 520733 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 520794 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 520856 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 520917 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [520959] 520959 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 521020 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 521081 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 521142 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 521203 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 521264 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 521325 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 521386 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 521447 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 521508 29 96.6 0 A............................ | A [521534] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //