Array 1 6121151-6119832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046171.1 Nocardia brasiliensis strain AUSMDU00024985 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 6121150 29 100.0 32 ............................. GCGATGGTCACCCACCTGTGCCCGAGCATCAT 6121089 29 100.0 32 ............................. ATGTCTTAGACCGGGGGCCGGTACCGCTTGTC 6121028 29 96.6 32 ............................C GACCCGGCCGGGCGCCTGGACCCGCGGTTGAC 6120967 29 96.6 32 ............................T TTGTGAGGAGGTGAGCTCGATGGTCCTGAATC 6120906 29 100.0 32 ............................. TGACATCGTGGACGACACCACCCCAGAGTTCA 6120845 29 96.6 34 ............................C GATCCATTACGCCGCCTCCCCCCCGGCTCAGCGA 6120782 29 100.0 32 ............................. ACCATCCTGGACGTGCAGGAGGAGCTGAACCC 6120721 29 100.0 32 ............................. CAGGGCGAGCCGCTGGCGCGGATCAAGGCGCG 6120660 29 100.0 32 ............................. TCTTGGACGCCATGTTCGCCCACTCCTGCGAC 6120599 29 96.6 32 ............................A CCCTGTGGATAAAGATCGAGTGAAAACCCTTC 6120538 29 100.0 32 ............................. GTGTTGAGCCCTTCCATCTGGGCCGTGACGGC 6120477 29 96.6 40 ............................T TTAAGTACTAGTTGAATCTCAAGGGGGGAGGGGGAGGCGC 6120408 29 100.0 32 ............................. GCCAGCTCGGCCACCAGCGCGGCCGCATCGGG 6120347 29 100.0 32 ............................. TTCGTGATCGTCGACGTCGACGTGCCGGTAGC 6120286 29 100.0 32 ............................. CCGCGGGCGATCGGGCCAGCCGGGCGCGGGCC 6120225 29 100.0 33 ............................. CCGCCAGGATGGCGAACGATCGCCTCGGGTGGA 6120163 29 100.0 32 ............................. ATACGGAACGATCGGCCAGCACGCGCCACGCG 6120102 29 96.6 32 ............................C GGCGGCCAAGCCGGGCAGGCTGGATCCGGGTC 6120041 29 100.0 32 ............................. TTTGTGCCCCAGCCCATTTGAACAGCTGGTCT 6119980 29 96.6 32 ............................T CATGAGCAGAACATGCAAGGACAGAATGTCGC 6119919 29 93.1 29 ............T.............T.. CCTCACCACCGTGGTGCGGGCACGGCAGC 6119861 29 72.4 0 CAATC.......G....T.........T. | C [6119849] ========== ====== ====== ====== ============================= ======================================== ================== 22 29 97.3 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : CGACTTTTGACCACCGTCGTTCTCACTGCCGTCCCCCCGGGACTGCGCGGACACCTCACCCGATGGCTCCTCGAAATCAGTCCCGGCGTGTTCGTCGGGAACATCTCCCCGCGTGTCCGGGAACTCATGTGGCAGCGCATCATCGAATTCGTTGCCGAAGGACGAGCGATCATGGTGTACACCGCCCGCAACGAACAACGCCTCGCATTCAAGGTCCACGGCCACGACTGGACACCGGTGGATTACGACGGCCTGACATTGATGCGTCGCATGACAGTCCCGGACTACATCCCTGCCGCCCAAGCACCTTCCTCCGCCAAAACCCGCGGCACATCCAACCAAGCCGAACACCAATCCGAGACTGTTTGGCGCCGCCGCACAGCCCGACGCAAGTTCAAACCCAAATAGCGGTTCCGGGGATGCCCCCGCACCCAGCACAGACCAAATACAAACCGAATCAAAAATGGGCCCGGCGGTTGTGAACCGCCAGGTCAACAAGT # Right flank : CGGGCGCGGCGCTTCGCGCCGCCAGCGCGGTTCATAACTGACCGTCGTCAGCCACGATGACGGTGTCGTCGGACTACCAGCTCGGCGTCAGCGGATATGAGCAGCTCGAGGGGGCGAGAATGCGGTGTAGATCCTGTACGAGCCGTGCTGGGGCTCGAACCGACACACGCAGTGTCACGGCTCGGTCCGGGCGTTAGTTGCGGCGGGGGATTCCGCGGCGTTGGAGTGTGGTGCGGATGGTGGTGTGTGCGACGCCGAGGCGTTTGCCGATTCGTTCGAGTGACTCGCCGTTGTGGTAGCTGGTGATGGCATGGTCGATCTCGTCGGGGGTTAGGCGTCGCTGCTGGCGGATAGTTGTGCCGCTGTCACGCAGGATGGTGAGGATGCTGCCTTTGGCGAGTTGCCATTCGTTGGCAAGCTTGTTTGTGGATGAGCCGGCTTCGTACGCCGCGATAATCCGGGTTCTGTCGGTGGCTGTGAGCCGCCGTCGTAGGGCGTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6160173-6159656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046171.1 Nocardia brasiliensis strain AUSMDU00024985 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6160172 29 96.6 32 ............................C GCGTTGAGACCCTCCATCTGGGCCGTGACGGC 6160111 29 96.6 33 ............................C GGTTAGAACTGAGCGTTACATATGAATGAGAGT 6160049 29 96.6 31 ............................C AGAACGCCTTCAGCGTAGCGGGTTACACCGA 6159989 29 100.0 32 ............................. AACTCCACCCGCGCGAGCGGCACCGGCGACTT 6159928 29 96.6 32 ............................C GGCCTGTCGCGGCTCGATTTGGAGCGCGACCC 6159867 29 93.1 32 .C.............A............. CGGGGGTGAAGAGGGATCCCGGCACTGGGACG 6159806 29 100.0 32 ............................. GCCATGTGGGCGAGGGTCGCCGCGCCGAGGAA 6159745 29 100.0 32 ............................. GAACACAGGCCCTCCACCCGGCCGTCCGGGTC 6159684 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : CTGCGGGGCACTCGGGCACCGGCTCGTGCTCGACGGCGGCGAGCCTCCACCACACGTATGAGCTCAGCTGGTCGGATCGAGGTACTCGTCTTCCGCTGCTGCGCACCAGCAGATATCGCAGTGCGTACAACTCGAACAGCCATTGCAGTGGTCTATGAGCCGATGCCCGCAGACGGGGTCACGGTCGTCATCGTGATCGGTGCGGTGCGGGATCAGCGGCCCGCCTGAGGTGTAGGCGCGTGGCTCCATACGCGAATCATTACCGCACCCACCGACGAACCCGCCCCTTTCCGAAACCTGCTGCCACCTGCGTGGCACTCTCTGACCCAGTTTCACAATTCCGTCCTGGTGCATGCGATGTCGGGCTAAGCCACCGCGCACTCGGCAGACCTTCAAGGTGAGGGGAGTTCTTGTCTGTCCTGTCGACGGTAGGGTCGGATCGTCGAAACAAACCGATCGGAAAGTCGCAGTTTGGGTAGAGAACATGCAGATCAACAAGT # Right flank : GCGGCCACGGGTTCCTAAGGACGCTTCCGCCTGGCACACGCTGGTCTTGCCGGGCGAGGTTCAGCAGCTAGTCAATTATTTGCTGTTTTCACGATGCGGACGATGTGAAGATGGTTGCCGACGTCGCCGGGGTAGCGGCGCGAGGTGACCATGACTGATTGCCACCCCGTTTCGGTGAAGGCTCGTATCCGTGCGGGAGTGGTTGTCTCGCTGTTGCCGGCGAGGGTTTCGAAGGTGCGTTGGAGTGCGTTGTGGTCGTCGGGGTGGAAGGTGACGGGATCGCCTTCGCGTTCCCAGTCGATCCAGCTTGGTACGCGGCTGATCCATTCGGCGATGACCGGCATTCGGAGACGCGGAGAGTAGGCGAGTAGGGCCGCGGCGGTGGTTTCGTCGTCGGGAGGTGGCTCTGTCCACCAGCCTTCTTTTCGTGCGCTGAACGATCCGGCGCCTGCGCTGAGGTCGCGTACTTCGACGGGGCTGATCACTGGCGGGTTGGTGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //