Array 1 101387-102209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZC01000019.1 Escherichia coli strain MOD1-EC6361 MOD1-EC6361_19_length_102422_cov_38.0634, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101387 29 96.6 32 ...........T................. GCCTGCTCGTGAGTCCGCGGCGCGAACTGCCG 101448 29 100.0 32 ............................. ACGGCGCGTTCTTGAGTTCTGTATACTGCTCG 101509 29 100.0 32 ............................. GAATGTGGGGCGCTGCTTCATCGTCAAATTAT 101570 29 100.0 32 ............................. ATGGAAACCCGTCGCCTGGTTAAACAGGTTAT 101631 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 101692 29 100.0 32 ............................. CTGGCGGCGTTTCAAATGAGGCTGGAGGCATT 101753 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 101814 29 100.0 33 ............................. ATCACCCCGAGCGTGACGCCGTTCGCCGCGTGC 101876 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 101937 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 101998 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 102059 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 102120 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 102181 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATACTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25479-27398 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZC01000015.1 Escherichia coli strain MOD1-EC6361 MOD1-EC6361_15_length_119165_cov_39.8976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25479 29 100.0 32 ............................. TTCTCGACCGTTGCCCGTCACCGAAAAAAATC 25540 29 100.0 32 ............................. CTGCTGCTGATCCCGTTTGCGGCGTGATATAC 25601 29 100.0 32 ............................. ATGAAGGACGCTGGCAAAACAACGACAACCCC 25662 29 100.0 32 ............................. TCTCGCGGTTTACGGGCGAACCCGCGTTACTA 25723 29 100.0 32 ............................. GTGGGCGACCGCCGCCAGTTGGAGCTGGCGAC 25784 29 100.0 32 ............................. GATCGTGGGGTGGATGTGTTGCCACTGAGTCG 25845 29 100.0 32 ............................. TCTTGGTTAACACAATACTGAGGGCTTGATGT 25906 29 100.0 32 ............................. CGGGATAATTCAGCTTTCACATCACGGCAAGA 25967 29 100.0 32 ............................. GCATCTCTTCCACTTAAATCTCCTTGTTACGA 26028 29 100.0 32 ............................. GATTTACACATTGACCTAAACCGGATTCTATT 26089 29 100.0 32 ............................. TTGGCTAGATTAACGTGAATAGTATAAACAGC 26150 29 100.0 32 ............................. GGTTATTCAGGATGCCTTTAAGCCCATTCCCA 26211 29 100.0 32 ............................. GATATAGAGCGGGTACTCGAGCGGAGCGGGGA 26272 29 100.0 32 ............................. ATTTAACAAATATCCCGCGATTAATATGCGGA 26333 29 100.0 32 ............................. CCTTTTACTGGCGATTTGTGGAACTTGGCACC 26394 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 26455 29 100.0 32 ............................. CGTGATTGTTGGGATCTCATTCAGCCCGAGAT 26516 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCGCGTCACGGCTTA 26577 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 26638 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 26699 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 26760 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 26821 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 26882 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 26943 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 27004 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 27065 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 27126 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 27187 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 27248 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 27309 29 96.6 32 ............C................ CCGGCGAAGGACTTGCTCGTGTGGTTAAAGCC 27370 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //