Array 1 1294-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEIA01000651.1 Pseudomonas aeruginosa strain 81 scaffold_650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1293 28 100.0 32 ............................ TGCCGAACAAAGAAGCCGATCTTCATGGCACC 1233 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 1173 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 1113 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 1053 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 993 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 933 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 873 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 813 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 753 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 693 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 633 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 573 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 513 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 453 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 393 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 333 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 273 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 213 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 153 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 93 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : AAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2382-1633 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEIA01000053.1 Pseudomonas aeruginosa strain 81 scaffold_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2381 28 100.0 32 ............................ TTGATGCGCCGACCCGTGGCTGTCTTTTCAAT 2321 28 100.0 32 ............................ AGGAACAGAGCGGCCATCAGCCAGAAGTAGGG 2261 28 100.0 32 ............................ TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 2201 28 100.0 32 ............................ ACGATGATCTATCAGACCTATCGTGGCTACGC 2141 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 2081 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 2020 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1960 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 1900 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 1840 28 96.4 31 .............T.............. CGGCGAGGCGATCGATCATGCGAATCAGCAA 1780 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 1720 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1660 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCKGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCNNGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGCGGTTATTCGCCCTACGGATCGGGCTCCTGGCATGCCCTCCGAGTGGTGGGGCGAGTCTTTTGGATGCTTGCAGAAGGAACTCGCCTGGAAAGGCGAAACAAGAGGCCAAGGCAACCACGACGCCCGCTCAAGCGCTAAGCAACAGCTTCCCCCCTTAGTGCCGTGCAGGCAGCGACGGGAGCTGGGGGCCAGTCACGCATTCACGGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEIA01000096.1 Pseudomonas aeruginosa strain 81 scaffold_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 65 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 126 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCGG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10493-9028 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEIA01000096.1 Pseudomonas aeruginosa strain 81 scaffold_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10492 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 10432 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 10372 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 10312 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 10252 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 10192 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 10132 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 10072 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 10012 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9952 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9891 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9831 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9771 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 9711 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9651 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 9591 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 9531 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 9471 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 9415 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 9355 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 9295 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 9235 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 9175 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9115 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9055 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCTGTTCGGGCTGGCTGTGTTCGATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGCCACCTC # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //