Array 1 12111-16031 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADQ01000011.1 Xanthomonas translucens pv. translucens strain SIMT-07 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 12111 31 100.0 33 ............................... ATGGCTGCACCTCACACCGCATAGTAAACCAAA 12175 31 100.0 36 ............................... TGTGATCTGCCAAGTGCGCCAGTTAAGGTGCCGGCC 12242 31 100.0 33 ............................... TTTTACAAATTGAGCGGATCTGTAGGCCATATG 12306 31 100.0 37 ............................... CTAACGAGCGCGTCATGGCAAAAGTTCGGCTAGTGGA 12374 31 100.0 34 ............................... GATATTGAGGGGCCGGGGGTATACACCGTCACGG 12439 31 100.0 36 ............................... CGCCGCTGCTTTCATCAATCCGCTCACCGTGGGCGC 12506 31 100.0 35 ............................... AGCATGTGCTGGCCGGGAGACCGCAGACCTTCCGC 12572 31 100.0 35 ............................... GTGGTATGCGGCCCCGCCCAGCTCCGCGAGCAGCA 12638 31 100.0 36 ............................... TGGGAAGTGAATCCGAACACGCGCCGAGACTCCAGG 12705 31 100.0 36 ............................... ATGGGCGAAATCAAGCACACCGAGGACGGCAAGTAT 12772 31 100.0 36 ............................... ACCATCGAGGCCGAGTTTAACGGCATGTACGTGGAC 12839 31 100.0 36 ............................... ACGTTCAAGTGGACGAGTAGGTTCCACAAGTCGGCG 12906 31 100.0 34 ............................... TTGTCCATCGCGCAGGCGCGCTTAATGACCACGC 12971 31 100.0 34 ............................... TCCTGTTCGAAACTGGGGGTGTGGTTGCCGATGA 13036 31 100.0 34 ............................... TACTACTGCCGGGCCGAGGCACTGGTGGCGGCGA 13101 31 100.0 36 ............................... CGGTACGGGCGAACGTCAGGGCAATGCCGTTGCCGG 13168 31 100.0 34 ............................... AAGTGTGCATCGCCGTGGCCCCTCTTGCGAAGGG 13233 31 100.0 33 ............................... AAAGGGGAGTCAGGTTAAGCACTTCGCGCAGCT 13297 31 100.0 37 ............................... GATTCCCATCTCTTACAGTGTGAGAGAGAACCGGAGC 13365 31 100.0 34 ............................... GATAACTCGAGTCGATTCCGAGATGCGCATGATC 13430 31 100.0 35 ............................... TGAACACGGTCGCTGAAGAACTCGCCACCAGAGAG 13496 31 100.0 36 ............................... CTCATGGCAGGCCTACAGTCCTGGCAGCGCGGGACG 13563 31 100.0 34 ............................... ATTCAACACCTGCATCACCAGCCCGCCCTACTAC 13628 31 100.0 34 ............................... AGGTTTCCGCCGTAGCGAGGGGCCGTCTCGTCGA 13693 31 100.0 35 ............................... CGCCTGCCCTTTGCCAGATTTGGCGGCGTCCAGCA 13759 31 100.0 33 ............................... CAACCCGAGCGGATCTGTAGGCCATATGCGCGA 13823 31 100.0 35 ............................... GTGCGTACTTGGCCGACCGCCGGGCTACGCGCGCG 13889 31 100.0 35 ............................... TTCCGCATGCCGTCCTCTCCGAAATGCTGCGTGAG 13955 31 100.0 34 ............................... CACTTCGCGTGCTCTGGGTGTTTGTCGTCTTTGG 14020 31 100.0 37 ............................... CCTCCCAACTGTGCCGGGCCAGGGCCACCATCGCCGC 14088 31 100.0 35 ............................... CGAATACGGCGCCTGAGGTAATCCCGGTTGTGTCT 14154 31 100.0 36 ............................... CTGGGGGGTTTTGGGCGCTGGGGGTCCGCGTTGAGA 14221 31 100.0 35 ............................... ATGGGCGAAATCAAGCACAGCGCCGATGGCAAGTA 14287 31 100.0 36 ............................... GTCTCCCGCTTCGTAGAGGAGGGTGTGCGCGGCAAG 14354 31 100.0 35 ............................... CAAAATTTCATTACGATGGACGACATCGTCACCGA 14420 31 100.0 37 ............................... ACCTGCTTGCGGCGCAGTTCGGCGGCCTGCAGGTCCA 14488 31 100.0 36 ............................... ACGGCCCTGGCCGAGCGGCAGAAGCTGTTGCTGGCG 14555 31 100.0 35 ............................... AAGCGCGACAGCAGCAAGGCCGGGAACCTGCAGCT 14621 31 100.0 35 ............................... CGCAGTCTCTGGCCGGAGATTGAGCTGAACCGCTC 14687 31 96.8 35 .....................T......... TGTACAAGGCGCACAGGCTAGCATGGCTCCATGTC 14753 31 100.0 34 ............................... TCGGATGTGGCAAGAGCGGCGTCGTCCAGATCCG 14818 31 100.0 36 ............................... CGGGACGCGGCGCTGGGTGTCGTGGACGCCGCGCGC 14885 31 100.0 33 ............................... ACAGACCTGGCCCAGCGGCAGAAGCTGTTGCTG 14949 31 100.0 33 ............................... ACGGTGATCCGATGCTGGGCGATGTCTGGGATG 15013 31 100.0 35 ............................... CAGTTTCCCCCCGCCGTTGGACGCGGGCGAGGGTC 15079 31 100.0 34 ............................... GGTGATCATCCTCGACGAGTGCTACACCGTTTTC 15144 31 100.0 34 ............................... TCCGTTGGGCCAGGTAGTGATGCACAGCCAGAGT 15209 31 100.0 35 ............................... GTGATGTGTCTATCGCCCCAGCCTGGATGATTCTC 15275 31 100.0 34 ............................... TCGATGCCGGCGGCCTGGCAAATCTCAGTCGCCC 15340 31 100.0 35 ............................... ACGACAGAAGCAATCACAGTTACTGCAATACTGAA 15406 31 100.0 35 ............................... CTGGCCAACCTGGTGGTGCTGGTCTTCACTTCCAG 15472 31 100.0 35 ............................... TCGGTATAGCGGTGCTTGAGGTAAAGCAGGCAAAG 15538 31 100.0 36 ............................... CGTTACCAGCGCAGCGCCATCCTGATCGACGAAACG 15605 31 100.0 34 ............................... TCCAAGTCGGGATGGTCCGCGGCGCCGGCGCGGC C [15618] 15671 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 15738 31 100.0 35 ............................... ATCACGTACTAGCAGCCCGAGCATCCCCAATGAGG 15804 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 15870 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 15934 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 16000 31 87.1 0 ......CG.......C.........G..... | C [16025] ========== ====== ====== ====== =============================== ===================================== ================== 60 31 99.7 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CTGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //