Array 1 28080-27153 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYE01000035.1 Salmonella enterica isolate STY62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28079 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28018 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 27957 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 27896 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 27834 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 27773 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [27732] 27731 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 27670 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 27609 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 27548 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 27487 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 27426 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 27365 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 27304 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27243 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27182 29 96.6 0 A............................ | A [27155] ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45704-44211 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEYE01000035.1 Salmonella enterica isolate STY62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45703 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45642 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45581 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45520 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 45459 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 45398 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45337 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45276 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45215 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45154 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45093 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45032 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 44971 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 44910 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 44849 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 44788 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 44726 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 44665 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 44604 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 44543 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 44482 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 44421 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 44360 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 44299 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 44238 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //