Array 1 88302-89916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQA01000038.1 Salmonella enterica strain CVM 43757 43757_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88302 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88363 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88424 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88485 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88546 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88607 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88668 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88729 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88790 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88851 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88912 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88973 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89034 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89095 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89156 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89217 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89278 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 89339 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89401 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89462 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89523 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89584 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89645 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89706 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89767 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89828 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89889 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106049-106259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQA01000038.1 Salmonella enterica strain CVM 43757 43757_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106049 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106110 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106172 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106233 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQA01000017.1 Salmonella enterica strain CVM 43757 43757_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 28 96.6 32 -............................ CGTCGCGGAAAATTTCGCATTGACGATAAAGA 61 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 122 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 183 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 244 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 305 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 366 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 427 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 488 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 550 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 611 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [653] 653 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 714 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 775 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 836 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 897 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 958 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1019 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1080 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1141 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1202 29 96.6 0 A............................ | A [1228] ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //