Array 1 113829-114222 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTB01000005.1 Salmonella enterica subsp. enterica serovar Kiambu strain 39 NODE_5_length_319889_cov_20.7384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113829 29 100.0 32 ............................. GTAATTTTACCAAAAATTCTTTCTTTTTCTTC 113890 29 100.0 32 ............................. CCGCCAGTGCCGCCTTTAGAATATCTGTATTA 113951 29 100.0 32 ............................. GACGTATTGATAGTTTAGACAGTAAAGTTGAT 114012 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 114073 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 114134 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 114195 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAACTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 130363-133444 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTB01000005.1 Salmonella enterica subsp. enterica serovar Kiambu strain 39 NODE_5_length_319889_cov_20.7384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 130363 29 100.0 32 ............................. CGCCCCTCATCCACCAGGGCGATGTGATTCCC 130424 29 100.0 32 ............................. TGGTAGCCGACGGGCGTATTGCGGGGTGCATA 130485 29 100.0 32 ............................. GCTGTTTTGACTTTGGATCGTGAGCAGAGCGT 130546 29 100.0 32 ............................. CGCGTTCAGACATTTATCAAAAAACGCGACGC 130607 29 100.0 32 ............................. TTTGCCGCCTCGTAGTAATCCACCAGGCCAGC 130668 29 100.0 32 ............................. TTTTGAGAAATAGCCATCTTTTTTAACTAACT 130729 29 100.0 32 ............................. CGAACGGTGCTGAAATTATTGAAAATGCGGTA 130790 29 100.0 32 ............................. ACAGTTTGTTGAAATCTACGACTTGAGGACTA 130851 29 100.0 32 ............................. GACAAACGCGCGGCTGGAGTCAGGATCAGATA 130912 29 100.0 32 ............................. GACGACAGTTATATGAAAACGCATTGAGCGGT 130973 29 100.0 32 ............................. TTATCGATCGTCCAATCGACCTGCATCTCGGT 131034 29 100.0 32 ............................. CGATTCCAGGCGAACGCGCGTCTCAGCAGGCA 131095 29 100.0 32 ............................. GACACTGGTCTATTATCGCCCACCGGAAGAAT 131156 29 100.0 32 ............................. CCGCACCGCTGGACAGTCGAAGAACTGGCAGA 131217 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 131278 29 100.0 32 ............................. GTATCGATCAACACTAATTCGCCAGTGTTCAG 131339 29 100.0 32 ............................. TGGCGCCGTAGGGGGTTGCAGAATTTTATAAA 131400 29 100.0 32 ............................. GCGAACCCTCATCTGTTACTGGATCAGTGCGT 131461 29 100.0 32 ............................. AATTGCCCTTGCTGCCCGGCTCTTCTACGGTC 131522 29 100.0 32 ............................. CATCCAGACGAAAAAGCGCGTTTCGCGGCGCT 131583 29 100.0 32 ............................. CTGGTTGTTGGCTTTTACATGGATTCTGGTCT 131644 29 100.0 32 ............................. CGGCTAACGAGTGTCGCCCGTGGAAACGTAAC 131705 29 100.0 33 ............................. GATCGCTCCGTTCGCGTCGAACACCCGGAGGGG 131767 29 100.0 32 ............................. GGGGAGAGAGGAAAGGGGGGTTTGGGGGGTAT 131828 29 100.0 32 ............................. ATCGTTGTGGTCCGCGTTGCTGAGGACGAGGA 131889 29 100.0 32 ............................. CGCGACAGCGCGTTTCACTGCATCGTCCATAA 131950 29 100.0 33 ............................. CCAGTCAGCACCAGACCAGAAGCCGTTAACCGC 132012 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 132073 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 132134 29 100.0 32 ............................. TTCGTGCTTAATAGAGGAGGCTGGTTAGATAT 132195 29 100.0 32 ............................. GCGGGACTGTTAGGGATAGACCCCGGAGATTT 132256 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 132317 29 100.0 32 ............................. ACCAGATTAAAGTCGGTCTGGAAATGGTCATG 132378 29 100.0 32 ............................. TTATCTGGACAGGTGACAGCGAACACGAAATC 132439 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 132500 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 132561 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 132622 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 132683 29 96.6 32 .............T............... CCGGGTGCACGCTTTTATTTTTTATGACTCCC 132744 29 96.6 32 .............T............... CAATTTTTAACGATCACTCAGATAAAACAGCA 132805 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 132866 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 132927 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 132988 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 133049 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 133110 29 96.6 32 .......................T..... CACTTGTAATTCTTCGAGTTTATCGATGAATT 133171 29 100.0 32 ............................. ACGTTTATTCATCAAATGGGGAGATTCTGCTG 133232 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 133293 29 100.0 32 ............................. TTCCGCCATGACCGTTTCGGCCTCCAGCTTTC 133354 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 133415 29 96.6 0 A............................ | A [133441] ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGTGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //