Array 1 694777-700933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069798.1 Paralysiella testudinis strain 26B chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 694777 28 100.0 32 ............................ TGTTGATTCACAGCAAGCATGTATGTCTGTAA 694837 28 100.0 32 ............................ ACGCGCGGCGGCTGCCAAGTTGGGTTTTGCTA 694897 28 100.0 32 ............................ ACAGCCAACGTGCGCCCGCTCACTGCCTCAAA 694957 28 100.0 32 ............................ GCTCAAGCCCAGCTCAATAGCCGCCACGATGC 695017 28 100.0 32 ............................ TCCGCACTTCGACCTGCTTTAATATCCGCCAT 695077 28 100.0 32 ............................ CAACAACCCCAATACCACTATAAGTCCAAACA 695137 28 100.0 32 ............................ TGCTGTTGCGCAGGAGCTGGCACGGGCACGCT 695197 28 100.0 32 ............................ CATTACCCCCCCGCTTTAAATTTAATATCTTC 695257 28 100.0 32 ............................ AAACCGCGAACCGATGCAGGGGGTGAATCTGG 695317 28 100.0 32 ............................ ATATTTGGCAAGTGAGGGTTATGAATGGCTTG 695377 28 100.0 32 ............................ ATCTGCATCATTTTCTGCGCCATCATGTCTTG 695437 28 100.0 32 ............................ CAATACCCCGCGCGGGATAGATTCCGCTGTGC 695497 28 100.0 32 ............................ ATCCATGCTTCAGGCAGCTAGGGCTTGTCAAA 695557 28 100.0 32 ............................ AACAGGCGCTTAATAAGGCGAATTGCCCACAC 695617 28 100.0 32 ............................ TGAAAATGTCGGTGCAGTGGTTGCATATGACG 695677 28 100.0 32 ............................ TCCTTTTCTCCCAAACTGGGGATTCTGTAGCA 695737 28 100.0 32 ............................ ATATTTGGCAAGTGAGGGTTATGAATGGCTTG 695797 28 100.0 33 ............................ CAGCAAACCCTGAAAACAATGGCAAAGTGTTTT 695858 28 100.0 32 ............................ ATTGCCAAATTTGCTACGGTTAGTTACAATTC 695918 28 100.0 32 ............................ ATATACCCGTTTTCTTCTTTTTCACCAGTATT 695978 28 100.0 32 ............................ AACTGCAGAAATCATAATAGCGAATTTGGCAA 696038 28 100.0 32 ............................ GTGGCCGAGCACCACTATCGCCGCGCCGTCTA 696098 28 100.0 32 ............................ AAACGCGCGGGCAGGTGCACAGCGGCCAAAAT 696158 28 100.0 32 ............................ ATTAACATAGGCAGCTACAGCGGCACATTCAC 696218 28 100.0 32 ............................ TGATTTACAGCCCGAAAGCCCTGAAGCCCCGG 696278 28 100.0 32 ............................ TTTAACACCTTTTTTTGCATTTCCCAATAGTT 696338 28 100.0 32 ............................ TTAGCCAAATACGCCGCCGCATCTTGCGGCGT 696398 28 100.0 32 ............................ TTTTCATAAATAAAACAAATGGCAGCCTTATG 696458 28 100.0 32 ............................ TATGCTGCTGACTTTTGCAGGCCGCATACTCA 696518 28 100.0 33 ............................ CCAAACCCATTACTGGCACGCCATCGAAAACAA 696579 28 100.0 32 ............................ AGACTGATGCGCTGGCGCAGCATAAACGGCAG 696639 28 100.0 32 ............................ AGCCGGGCGGTGTAGCCGTCAAAGTCGTTGTA 696699 28 100.0 32 ............................ ATAAGGCAAAGATGCTGCGGGGATTTCTGCCC 696759 28 100.0 32 ............................ AGATGAATAACTTTAGTTCTTATAGCTGGCTT 696819 28 100.0 32 ............................ AGATGAATAACTTTAGTTCTTATAGCTGGCTT 696879 28 100.0 32 ............................ GCCGCAGAGCGCAAAGCATTGCAAGCCAAAGC 696939 28 100.0 32 ............................ ATCGGTGGCGCGCACTGCTGCCCAAGCCATAT 696999 28 100.0 32 ............................ CGCCTAAATACATGAATGCCATGATTGAACAA 697059 28 100.0 32 ............................ TATAAAGGCCGCAAACTCTTCAGCAACATTAA 697119 28 100.0 32 ............................ AACAACAGACTGCATGAATGGCTGCCTGATAG 697179 28 100.0 32 ............................ CAATACGACACCTTTGAAGACGCTTTCAATTC 697239 28 100.0 32 ............................ GCTGCCGGTCTGTCACTGGCCGCTATGTCCGC 697299 28 100.0 32 ............................ AATCTGATGATTCGGCTGCACTTGCGAAGTCA 697359 28 100.0 32 ............................ TGACAGCCGTTTTCTTGGTCGCGGAAATGCAC 697419 28 100.0 32 ............................ ACTTTCCATGCAAATTGGGGATTGAAATGCTA 697479 28 100.0 32 ............................ GCCGCCCCGGCGGCCAACACTTTAACAATGGT 697539 28 100.0 32 ............................ GTTTGTTAATGCAACACGTGAAAGTCAAAATT 697599 28 100.0 32 ............................ TTTGAAGACGCCTTCAATTCCGGCACTGAAGA 697659 28 100.0 32 ............................ TCCGTTCGTTCGGCCATAAGGCTGCCTGAAAA 697719 28 100.0 32 ............................ AAATTGGCAGCGAAGAAAAAATGCGCGCCCAC 697779 28 100.0 32 ............................ TGCAATTTCAGAAAAATCACCTGTGGATAACT 697839 28 100.0 32 ............................ AAACTCACCAGTGCAGCCCGCGCCGCCCAAAC 697899 28 100.0 32 ............................ TGTGAAGTTCGATTCCATCGCCGTTTGATTCA 697959 28 100.0 32 ............................ GCGCTGGGCAATGATGCAAACTTTGCGGCCAC 698019 28 100.0 32 ............................ ACCAACTCGGCGTATTCGGCGCTGTCGTCTTG 698079 28 100.0 32 ............................ TTACTGGCCAAGCTGGCTGTAAACGACAACCT 698139 28 100.0 32 ............................ CACGCAAGTGATGCTTATTTAGGCTGTGCACC 698199 28 100.0 32 ............................ GTTTGTACCGCAACAGAACAACCTTTCAGGCA 698259 28 100.0 32 ............................ ATATCATTAAAATAATACTTGTATGCCCCCCA 698319 28 100.0 32 ............................ GTTAGGATATCCTGTAAAAGGACGCCGATTAC 698379 28 100.0 32 ............................ TTTGTCGCCCGCTTTGGCCATGGCGTTATAAG 698439 28 100.0 32 ............................ TTACGCTGTCATTTTTTATCGTGAATTAAAAC 698499 28 100.0 32 ............................ CACCCCAGTTTAAGGCCACGGGTGCAGCCTTA 698559 28 96.4 32 .............T.............. TAAAGCACACCGACCAAATTCAAAAGCTGCTG 698619 28 100.0 32 ............................ ACGATGGCACGCCGCACTGGCATGGTTTGCTG 698679 28 100.0 32 ............................ AACATATGTTATTGCGGTAATGCCTAGGGCGG 698739 28 100.0 35 ............................ TCCCGCAAACATTTGGCATTTATAAACTGCCTGAA 698802 28 100.0 32 ............................ CGGAACAGGAAAAATCAGACCTGTGCAAAGAC 698862 28 100.0 34 ............................ TTGGCCACGGTTTCCGGTTCGTCCCCCCCCCTAT 698924 28 100.0 32 ............................ TTGATTGGCTTTATGGGCTACCGCATGTACAA 698984 28 100.0 32 ............................ TGCACAAGTACGGCTTTGGCCGTGCGGAGCTT 699044 28 100.0 32 ............................ GCCACGATGCCGCCACGGCAGCGGTAAACAAA 699104 28 100.0 32 ............................ TTCTTCTGAGAATGGTTTTTCTTGGTCGCCTT 699164 28 100.0 32 ............................ GCTGATGTGGCTGTGGATGCCACCGCATATCA 699224 28 100.0 32 ............................ ACCAGCACCAATCCGGCCGGCGAAATGGCCGC 699284 28 100.0 32 ............................ TTCGGTTTTTAAATCGTTTACGGTTTTGGCTT 699344 28 100.0 32 ............................ CTTGTTTGTTGACTGTAGCAGCCGTTGCGCTA 699404 28 100.0 32 ............................ GCCCGCCCCATCGCCCTGCCCGAACCTACCTT 699464 28 100.0 32 ............................ GCCGATATTACGCCCAGCTTTGCGCACAACCA 699524 28 100.0 32 ............................ ATTTCAAAATCGCGCCACTTGGGATGTAGTCC 699584 28 100.0 32 ............................ TTGTTTGGCGACAAAGCGGGCAGTGTCGGTGA 699644 28 100.0 32 ............................ GTACTACGCCAGCCGCGAAAAACTGCAACACG 699704 28 100.0 32 ............................ TCGGTATAGCGTTGCATAAAGCCGCCGAATAG 699764 28 100.0 32 ............................ GTACTACGCCAGCCGCGAAAAACTGCAACACG 699824 28 100.0 32 ............................ TCGGTATAGCGTTGCATAAAGCCGCCGAATAG 699884 28 100.0 32 ............................ TCCACCGCAGGCAACACATGCACATCAATACA 699944 28 100.0 32 ............................ GTTTAATTCAATCAGCATTGTTTCACGCTGGC 700004 28 100.0 32 ............................ ATCAAGCGCAACCCCAATTACGCCGGCATCAA 700064 28 100.0 32 ............................ ACGGCTTGGTCTAGCGTAATCACGGGGGTTTT 700124 28 100.0 32 ............................ AATATAAGTGCCTTCTTCTTCATCAATCCAGG 700184 28 100.0 32 ............................ AAGACGTGTCAAGCATGGGAAAACGGCGTGGA 700244 28 100.0 32 ............................ TGAAAACACCGAGAGCGCCATGAGTGCCTTTT 700304 28 100.0 32 ............................ ATACGCCGCTGCCAAGCCGCCCAGCCACCAAA 700364 28 100.0 32 ............................ CGGATCAAATGTAGGCATTAGAGGTGTTGATA 700424 28 100.0 32 ............................ TGAAGTCGAACAACGCCGTCTGTTTCTTTCAC 700484 28 100.0 32 ............................ GTTGGCGTGTTTGATTTGGTCTTTTAGATGGT 700544 28 100.0 32 ............................ CCGAGCTGATTAATGCCGATGCCATTTCCATG 700604 28 100.0 32 ............................ TTGTCTGTTTCCGCCATCGAAGCCGTGTTTTG 700664 28 100.0 32 ............................ TGAAAAGCGGCCAGCTGCTGATTAACGTAAAC 700724 28 100.0 32 ............................ TGTTGTTGTGTTTGATTGGGCTTTGGCTGGAT 700784 28 100.0 32 ............................ GATAAAGCCAGCAGTTGGGCCAGCAGCCTAGA 700844 28 100.0 32 ............................ AGTTTGCCGATTTCTTTGATGCCAAAGACTTA 700904 28 92.9 0 ...................AT....... | T,C [700928,700930] ========== ====== ====== ====== ============================ =================================== ================== 103 28 99.9 32 GATTCCTGCCGCACAGGCAGCTTAGAAA # Left flank : AATTGCACGCCAGCGGCAACATCAGCGACTACGCCTTGCTCTACGCTGTGGCCAAAGTACCCCAAGGCATCCAAAGCCATGCGCGCTACAGCCGCAGCCACCACAAAGGCCCAAGCGCCCTGCGCCGCGCCGAACAGCGCCTCAGCGCCCAAGGCAAATGGCAGGCCGAAATCGCCGACAAAATGCGGGCAAAATGGCAAACCCCGCCCAAACTGCCTCACCTACAACTAAGGAGCGCCAGCACCAAACAAACATTCACCCTCTGGATTCAACAGCAAAACCACACCCACCCCAAACCCGGTCTATTTAGCGCCTACGGCCTCAGCCAAGAGGCCACTGTACCGCAGTTTTAAGCCAAGCCAAATCCAACCCTTTTTTCAGCTAAATAAAAACCATATTTTAAAACAATTGGTTATAAACGCAGCCTGAAAAAGGGTTGGTTAGGCAATCTGATCTTTAACAGATTGAAAGCAAAACAAGTTTGGCATAATTTACGCTAG # Right flank : ACATCCATCACCCTATACAACTTTTCGCGCTAGGTTATTGACATTAAGACATTAAACCAATCTATTTATGAAATATGAATTATGAATAAAATGAAAAGGCTGCCTGAATTTAAAGCTTCTACGAAGCCAAAACATTCAGGCAGCCTTTGCTTGTGTTTACTTGTTGGCAGCTTAAGTCGGTGCGTGTTCTTGCACACCACTTACAGCGCAGCCTTTAAAGGTTTTGTTGCCCACATCCAAGGTGGCGGTGAATTCATTTTCATGGCCGTCTAGGGTGCAGGGTTGGCTGCGGATGTTCAGGCCGATTTTCTGGCCTTGATCTTCGCCGAAGAATTCCACGCCTTTGGCGTAGGCGGAGCGTTCTACGGTGATGGTGGCGCTTTTCAGCTTAGCGCCTTCGATGCTTAATTGGTCATGATCCACCACCGCGCGCCAGGCGCTGCTGTTGTCGCCAAAGGCGGTAAAGGCAGTGATTACGGTGTTTTCAGGGTTGGTTTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 704094-704722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069798.1 Paralysiella testudinis strain 26B chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 704094 28 92.9 32 .T..A....................... GCCGGCATTATGAACGACAACATGCGTGGCGA 704154 28 100.0 32 ............................ TTAGCGATTGCATGAAGTTTAGTAGCCATGAT 704214 28 100.0 32 ............................ ATGAAGCGTCCAAAGCGGGGGCGGTAGTCGCC 704274 28 100.0 32 ............................ GCACTGGCCGCAGAATCAGGATGCCAGCCGGA 704334 28 100.0 32 ............................ GTTGAAGGCCGTATGCCGCCCGTCGTCCGTCG 704394 28 100.0 32 ............................ ACTGCGCCACTGGCACCGCCGCCGCTTAATAC 704454 28 100.0 32 ............................ TACAACAACATGGTTCGCTTCCAAGCCGCTGC 704514 28 100.0 32 ............................ TCCTGCCGCACCGCCCGATTCAATCGGATTTT 704574 28 100.0 32 ............................ TTGGTGACCATGAAGTCAGTTATGGAGTCGTT 704634 28 100.0 32 ............................ TCGGGTGTCAGGTTTCAGGTGCCGGACATCAG 704694 27 78.6 0 .G..-T...T...T........A..... | G,G [704715,704721] ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.4 32 GATTCCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTGCCCATGCGTTCAGTCATATTTTTGCCGGCGGCTATGCAGCGGGCTACTACAGCTATAGCTGGGCCGAAGTGCTGTCGGCCGATGCTTATGCCGCTTTTGAAGAAGCCGGGCCTGAGCAAATGGTGGCCACCGGCAACCGCTTCTGGCAAGAAATCCTCGCCGTGGGCGGCGCCCGCAACGCCATGGCTTCATTTAAAGCCTTCCGCGGCCGCGAGCCGGAAATCGACGCTTTACTGCGCCACAGCGGCTTTGATGGCGAGGCTGCCTGAAGATTAATATGTTGTTTACGTTGAGATAAACCCTTATCGGTTTAAAAGGCTGCCTGAAAGCAAAGCTGCTGCAAAGCAAAGCCATTCAGGCAGCCTTTAGGCTGTATGCGGGCAATCAATGGCGTTAATTGAATAGGAGGTGCCTTGGTGCATCAACGGCGGGTTGATTGGGATTCGATGCGCCAAGGCAGTTTGGGTTTTTGAATCAGGCAGCATGTTTACTGTTT # Right flank : ACAATGTATAAACCAAAAGGCTGCCTGAAACATAATTGGATGCAGCCGCCATGTTTTAGCCGCGCCGAAACCATGTTTCAGGCAGCCTTAACGGCTTGGCAACGCCAAACGATACCTTGGCTGCAAGCCCGTTATTCAAATTTCCATCATTTCAAAATCATCTTTGCGCGCATCACAATCCGGGCAAGTCCAGTTGGGTGGTACATCCGCCCACAAGGTGCCGGGTGCAATGCCGTCTTCGGGCAAGCCGGCAGCTTCATCGTAAAAAAATCCGCAAATCAAGCACATATAGGTTTTCATGCTGCTCCTTGTTTTCAGTAAGGGTTAAAATTGACGCCAGATTGAACCTCAGCCGGTGTGGCGGTGGTTTTGATGCCTTATTGTAGCGCAGCGGCGGTTTCGTGCCAGCAGGCTCTTAGGGTATGATGGCGGCCATTGTAGGGTACGGCACAGTGCCGCTGCCATTTTGATAAAGCCATTATGTCCGCTTCTTATCCGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2392394-2383600 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069798.1 Paralysiella testudinis strain 26B chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2392393 28 100.0 32 ............................ ACTAACAAGACCCGCAGCGATGCCCCACCAGC 2392333 28 100.0 32 ............................ TTATAGGCTGGGGGCAAGTGCCGTTAGTGGCA 2392273 28 100.0 32 ............................ TGGTTTGGTCGGGATTGCGGTTAGGGTTCTGT 2392213 28 100.0 32 ............................ ACCGCCGGCATCGCATCAACAAACCGACGAAT 2392153 28 100.0 32 ............................ TTGTAAAATCAGGACGCCAATCCCGACCGCGC 2392093 28 100.0 33 ............................ TTGTACAGGTACGCCAACCCGTATAGTTCCGCT 2392032 28 100.0 32 ............................ ACTAACAAGACCCGCAGCGATGCCCCACCAGC 2391972 28 100.0 32 ............................ GATATAAAATATCTGTAGGGCATCGGCAGGAA 2391912 28 100.0 32 ............................ AATATCGCCTTGGGCGTCAGGATAAAGAAACT 2391852 28 100.0 32 ............................ TCATGGTCAGAATTTAACAAACTTATCCTTAT 2391792 28 100.0 32 ............................ GTTATTCCATCAAATGAACAGAATGTAGAGTT 2391732 28 100.0 32 ............................ AATTTCAAAGCGGCACCAGCATAGACAAAAAG 2391672 28 100.0 32 ............................ TGCCATTACCCATAGTTTTACGTTCAAAAGAA 2391612 28 100.0 32 ............................ TGTATCCGCACCACCGCATTGATGTGCTGCAA 2391552 28 100.0 32 ............................ TTTTTCTGGGGCATCAAGTCAACATCTACAGT 2391492 28 100.0 33 ............................ GTCGCCCACCAGCCGCTGAATCAGCACATTGTC 2391431 28 100.0 32 ............................ ACACTCGCCGAAAAACCCGAATCAAAGCCCCT 2391371 28 100.0 32 ............................ GTCATCCGCCCGCAGCATTTGGCATACGGCTT 2391311 28 100.0 33 ............................ AGTAAGGGGCGCGGAGGCATCCAGTGTTTGAGT 2391250 28 100.0 32 ............................ ATCACAATGGCGCGTTCGTATGTTTGGGTGTC 2391190 28 100.0 32 ............................ TGAACACCAGCAACGCCTTGACTTTAACCCTT 2391130 28 100.0 32 ............................ AACCGCACGAAAACCCCTGCCCGGGAATTGCA 2391070 28 100.0 32 ............................ AACCGCACGAAAACCCCTGCCCGGGAATTGCA 2391010 28 100.0 32 ............................ ATGATTATCAACACCTTTAATTCCTACATTTG 2390950 28 100.0 32 ............................ GTTTTAAACGGTATGCTGCCGGTGAGGTAGTT 2390890 28 100.0 32 ............................ AAGATAGCAATGAACTAACAGGTAACTTACAC 2390830 28 100.0 32 ............................ ATAGAGCGACGAAATCGCGCGGCAATTCAAAA 2390770 28 100.0 32 ............................ AATATGGGATAGACGAGCGGATAAGTCATTTA 2390710 28 100.0 32 ............................ TACTGTTCCGCTCTTCCTATCGTCCCATTCCC 2390650 28 100.0 32 ............................ TACATTTGATGAGGTGATAACTCCGCCATTTT 2390590 28 100.0 32 ............................ AAGATTAAAACCAAACGCACCGCTTGGATTTA 2390530 28 100.0 32 ............................ ATTGTCGCCTTGGCGGTAGCGGCGCACTCTGC 2390470 28 100.0 32 ............................ TTTAAGGTCTTTACGGCGCATAAGCTCTGAAA 2390410 28 100.0 32 ............................ ATCGCAGCGGGCAAAAAAAGACGGCGGCAAAA 2390350 28 100.0 32 ............................ ACCGAACCCCTTCATGCCTGTTGCGAAGCCAC 2390290 28 100.0 32 ............................ ATTTTCCGCAATAGCAATGCCCGTTTGCGTGC 2390230 28 100.0 32 ............................ GTGTGCTGCGCAACGATACCGAGCCGCTGTAC 2390170 28 100.0 32 ............................ AACACAGCGGCAACACCAACGTCCTGTGCATC 2390110 28 100.0 32 ............................ TACAAGCTGGGCGATGAAGTGGACAATTTGAG 2390050 28 100.0 32 ............................ TTGTACGCCCTTACAAACTGGATAAGTCCGTC 2389990 28 100.0 32 ............................ TTTATGGGCAAGCGGGTGATTGTGGACGACAC 2389930 28 100.0 32 ............................ TATCGGCGGATGCGGCGCAGACGGATTAAACG 2389870 28 100.0 32 ............................ ACCGCCAAATTGGCCGCCGACTACGCAAAAAC 2389810 28 100.0 32 ............................ AACCATACCATTTGGGAATTGATGAGCCCGAA 2389750 28 100.0 32 ............................ GTATGATGCTTTGGAACGGCAACGGCACAAAG 2389690 28 100.0 32 ............................ TACTATGCTGAAAAAAAGAACGCGCTACTTCA 2389630 28 100.0 32 ............................ ATAAAAGGAAAGCATCATGAATATCAACCAAC 2389570 28 100.0 32 ............................ ACAGGCCGCCACAGCGGCCAGCGACCCCGTAG 2389510 28 100.0 32 ............................ ACCCCACCAGCAGCCAAGAGCGTTTTGGACTG 2389450 28 100.0 32 ............................ TTCTGCGGTGATGGTGGGGACTACCAAGGACA 2389390 28 100.0 32 ............................ AACCAAACAGCACATTGGTTATGTAAAGGGTG 2389330 28 100.0 32 ............................ AAACTCAATATTCGAGAATGGGGCAGCGGTCT 2389270 28 100.0 32 ............................ TCAAGAACCGAGCGAGTAGGAGCTTGAGCAAT 2389210 28 100.0 32 ............................ ACCCCCGGCACAACGACCCCGGGCGAAACAAA 2389150 28 100.0 32 ............................ TTCTTCAGTACAGGCTTGGTGTCCTTGTTACG 2389090 28 100.0 32 ............................ TTTATCGCCACCATCAAAGCCACCAGCCATCT 2389030 28 100.0 32 ............................ ATGCATTCGGCTACTTCCGCCGTGCTGGCCAA 2388970 28 100.0 32 ............................ TCAATCAACTGCGGCGGATAGCTAGCCTTAAG 2388910 28 100.0 32 ............................ TGATGGCTGAAACGGGGATAAATTAAAGGGAC 2388850 28 100.0 32 ............................ ACGGCAAAAAAACTGGTTGAACATACCGATTA 2388790 28 100.0 32 ............................ CCTTTTCTTTCTTGACATCTTCATTAACCACA 2388730 28 100.0 32 ............................ TTGACCCGGATATGCCTTATCCGCAGTGGTCT 2388670 28 100.0 32 ............................ TCCATATTATCGAAGTTGCAACAAATCAAGTT 2388610 28 100.0 32 ............................ ATTTAATCCCGAAAGGATAAAATGGATGCTCA 2388550 28 100.0 32 ............................ ATCAAGTCAAGCACACGACCGATGCCATCTTC 2388490 28 100.0 32 ............................ TATCCGCAAATTCGGGATATTTTTTATCCTAC 2388430 28 100.0 32 ............................ TTGATGAAGCTTTCCCAGCGACCGAAACCCAA 2388370 28 100.0 32 ............................ GCCTGCGCCGCCAAACTGCGGGCTAAGTCGGG 2388310 28 100.0 32 ............................ TTTTGGCGTGTAGGGTCTTTGCAACTAATACA 2388250 28 100.0 32 ............................ TCAAATGTAGGGTCTTTGTAGGTCATACTACC 2388190 28 100.0 32 ............................ GGTAAAGCTACTGGAAACGCAAGTATCAGATG 2388130 28 100.0 32 ............................ ATCATCACCCATCGACCGCATCAATACTTGGC 2388070 28 100.0 32 ............................ ACTAACATGATTCCCTTTATTTTGCATAAACA 2388010 28 100.0 32 ............................ ACTTACTATAAATTCCAAGCTGTGCCCGAGCC 2387950 28 100.0 32 ............................ AATATAATGGCGGCGTAATGTGAAAAGACGGC 2387890 28 100.0 32 ............................ TACACCCTGCCGCTTACCGCCCACACGGCGCA 2387830 28 100.0 32 ............................ GCCTGCATCGCTTGCAACTGCCGTAATACATC 2387770 28 100.0 32 ............................ ATTTGCGCTTCGAGGGCTTGAATACTGCTGAA 2387710 28 100.0 32 ............................ TGCAAGCGCTGAAGCGGCGCTTGTGCGGCCAA 2387650 28 100.0 32 ............................ TGTAATGAGAGGAACTTGCGCCATATCCCCAT 2387590 28 100.0 32 ............................ TAGACAAATTCAATAAGCTATTTGCAGGGTAA 2387530 28 100.0 32 ............................ CACTGCTTTCCGCTTTTCAATTAACGCAAGCA 2387470 28 100.0 32 ............................ ATGTAATACGGGTTTTTAATGTGGCAGCGACT 2387410 28 100.0 32 ............................ TACCGACTAGCGTTGGTTTATATGGCATTCAA 2387350 28 100.0 32 ............................ AATAGGCATCAACAACTGCTTGGTGTCGCCAT 2387290 28 100.0 32 ............................ ACCGTGGCTGAAATGGCCGCCGCCATGAGCAG 2387230 28 100.0 32 ............................ AATAACCATGTATGATAAAAGTTAGTAGAGGA 2387170 28 100.0 32 ............................ TAGGCGAATTCAATAATCTATTTGTAGGGTAA 2387110 28 100.0 32 ............................ CAGCGCGCCAACGCATAACGGCTTACCGAATC 2387050 28 100.0 32 ............................ AAAAAGCCGGCATCCTCCAGCTCCGCCAGCAT 2386990 28 100.0 32 ............................ ATTTTTTGGCGAACATCCGCACTGGCATCAAC 2386930 28 100.0 32 ............................ ATTGAGCAGCGCATTAGCGCTGAGATGCCAGA 2386870 28 100.0 32 ............................ ACCTTTATGCCAGCCAAGCCACCGCCGAAAAC 2386810 28 100.0 32 ............................ AGCGGGCAAAATCGCAGCAGCAAAAGCTGGGC 2386750 28 100.0 32 ............................ TGACGGCGCGTTTAATGCTTTTTCTATTAACC 2386690 28 100.0 32 ............................ TGCACCCGCGCGGGGTGAAATGGAAAGGCGAT 2386630 28 100.0 32 ............................ AGCAGCTCATTAACGAGGTTAAACATGAATAA 2386570 28 100.0 32 ............................ AAAAGGGCATGGTAATCATCGCCCCGCCGTTT 2386510 28 100.0 32 ............................ TACACGCTTATTGACTGCATCAAGCCAGTACA 2386450 28 100.0 32 ............................ ACCCACGCCAGCTAAGCAGAGTAGATGCATTC 2386390 28 100.0 32 ............................ TTGCTGATGTCCCAGTCTTGATACAGCACGCC 2386330 28 100.0 32 ............................ GCTGGCGAGCTTGGCGGTTACATCCAATCAGA 2386270 28 100.0 33 ............................ ATAGGAATTGCGGCTATTGTCGGCTCCCAGCAA 2386209 28 100.0 32 ............................ TCCTGCCGCACCGCCCGATTCAATCGGATTTT 2386149 28 100.0 32 ............................ TTAAAACGGCAGCATGATGTACCATATTTGTA 2386089 28 100.0 32 ............................ CTTAACGGCCAAATCAACAGCCTGAAAAACCA 2386029 28 100.0 32 ............................ ACAAATGAATTTTTAGATGTTACCGGGCGCAT 2385969 28 100.0 32 ............................ ACCACCGATTGGCGCATTGTCGCCCTCTCCGG 2385909 28 100.0 32 ............................ GCAAAAAAACAGGCATCAATTATATCCATGAA 2385849 28 100.0 32 ............................ AACAATTTTTAGGTCTGCTGTACATTCTACTT 2385789 28 100.0 32 ............................ TTCCGGCTCGTAAACAACGCCGCGCATGGCAT 2385729 28 100.0 33 ............................ CAGACGCAAGAGATGGGCACGGCGATGCCGGAT 2385668 28 100.0 32 ............................ AAGAGTGATTTCCCAAACGCTTTTGGTGTTTA 2385608 28 100.0 32 ............................ TGGTAAACGCCGCTGCCGATAAAGCCAGCGAA 2385548 28 100.0 33 ............................ AAAACGGAACGCCGATAAAATGAAAGGCAATAT 2385487 28 100.0 32 ............................ ATGCGCTGTGCGATGAAATCGACACCATGAAG 2385427 28 100.0 32 ............................ TGATGGCTGAAACGGGGATAAATTAAAGGGAC 2385367 28 100.0 32 ............................ TATTATCCAAAATGGTTTTATTGGTTTTGGTT 2385307 28 100.0 32 ............................ ATAAACCAGCCCAGAATGGCCTCAGATTGATT 2385247 28 100.0 32 ............................ ATACCGGGCGGCTCGCAAGGGCTGCCTGAAAA 2385187 28 100.0 32 ............................ GCTAACGTAGCTATCAACAATGTTTCTGTAGC 2385127 28 100.0 32 ............................ TTTGCCTGCTTCAATGTCGCAGGGTTTTCTTA 2385067 28 100.0 32 ............................ ATTTCGTAATTTCCTTTTTCGGTTAAGACACC 2385007 28 100.0 32 ............................ TAAGATTTTACAACGCATACACTATTTGATTT 2384947 28 100.0 32 ............................ ATATTATTGACAATATGGGATATTATTTCATT 2384887 28 100.0 32 ............................ AATTTGACACTGAGTTGGTTTAGCGATGCCGT 2384827 28 100.0 32 ............................ GGCGGTAGAGACGCGCGGTGAGGTTTCGCCGT 2384767 28 100.0 32 ............................ TCCGGCACCACCACCAAGCCGGCAGCGGCCAG 2384707 28 100.0 32 ............................ TTGGATGCTGGCCAGTGCCGCCATTTGTTCGC 2384647 28 100.0 32 ............................ ATCAGGGTAATACACTGCATATCGGCAATTAT 2384587 28 100.0 32 ............................ TTGCGGGTCTACTGGTTGCACTGATTTTGGCC 2384527 28 100.0 32 ............................ AATCAACAGGTGAGATCCAAGGCACACACGTA 2384467 28 100.0 31 ............................ ACTAAACCACCGGGCAGTATCACCGGTAAAA 2384408 28 100.0 32 ............................ AACGCGCTCTGGGTGCCGGCGATAAATTCACG 2384348 28 100.0 32 ............................ ACACTGCCCTCCGGTAGTGCAATGACGTCCAC 2384288 28 100.0 32 ............................ AACAAAAGAAAGCATTAAAGCGTTACCCCAAA 2384228 28 100.0 33 ............................ CATCAGATGAGTAATCACGGGCAATATTCAGTG 2384167 28 100.0 32 ............................ TTAGCGTGGTTGTTAATGACCAGCTCTGCTTT 2384107 28 100.0 32 ............................ ACCACCAGCCCGAGCAACTTAGCCTTACCCAT 2384047 28 100.0 32 ............................ CAAACGTCAACGACCGAAAAACCGGCCGGCCG 2383987 28 100.0 32 ............................ AATCAATTGCGGCGGCACACCGAAGGCGCGGC 2383927 28 100.0 32 ............................ ACAACGTGCGCCGCTCTTTAAAAGTCTGGCAA 2383867 28 100.0 32 ............................ TTCAACCTTCGCCGTTCGTTGCTTGGCCTTCA 2383807 28 100.0 32 ............................ ACAGCTTCCATGGCCGAATCCGCTCCGGCTAA 2383747 28 100.0 32 ............................ CCCCGGCGGTATCATCGGCAACAGTGGCCAAT 2383687 28 100.0 32 ............................ TGATATTGGGTTACCCGCTCAATCGCAATATC 2383627 28 85.7 0 ...........T.CC..T.......... | ========== ====== ====== ====== ============================ ================================= ================== 147 28 99.9 32 GTTTCCCGCCGAATAGGCGGCTTAGAAA # Left flank : TTACCCACAACTGGGACACCGGCAGCTACGACTTGGGCAACGGCTACGGCCATATCGCCATTGAAGTAGACGATGCTGCCGCCGCTTGCACTGCCGTGCGCGAAAAAGGCGGCAAAGTGACCCGCGAAGCCGGGCCGATGAAACACGGCACCACCGTGATTGCCTTTGTTGAAGACCCCGACGGCTATAAAATCGAATTTATCCAGCGCAAAACCGGCAGCGATTCTTACTAATCAAACAACTCAAACAGCAGCATAAGGCTGCCTGAACGCTTAAGCTTCACAGAAGTTTGGCTTTCAGGCAGCCTTTGTTTAATGATGTTGGTGGTTTTTAGGCCATCAAACCAAACCTTCAAACAGCATCAACCCGAACCCTTTTTTAATCTTAATAAAAATTATTTTTTAAAACAAATAGTTAAATATGATCAATAAAAAAGGGGTTTTTGCGCATTTGGTGTTTAAGCACTTGAGCAGGAAGCAAATCTGCCATACACTGCGCTA # Right flank : CTTGGCAATTCGCTAGATATAGATGAGTTTGTGTTTCCCGACTAAATAGGCGGTTTTTAGAAACACATAGCGCAAAAATTGACAATGCCAGCCCATTCTGCCGCCATAGTCTTGCTACGGCGGCTTTTCTTATGGCGGTTTATGTTTATAAAGCTGCGCTTTTTTCGGCTTGGGCGCCATATTGCTTTTTGTTGCAGTGCAAACAGGATGGTTGGCGGCGCGGTAGCGCTGATTTTGCGCATTAAAATAGCGTATTAGGTTGTTTCATCGAAAAATAATATTGTGTTGTGTTTGATTTTGTTTAGAATCGGTGTTTCCAATTTTAAATACATGCCGTGCTGTTGGCATTGCAACCCGGAAAGGATTAAAGAGATGAGGATTGGTATTCCCAAAGAGTCGTTGCCCGGCGAAACCCGGGTGGCCGCCACCCCCAGAACGGTGGTGCAATTGCTGAAGCTGGGGCATGAGGTGGTGGTAGAGAGTGGGGCGGGTAAGGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCGCCGAATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //