Array 1 43222-44976 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOFY01000002.1 Streptococcus equi subsp. zooepidemicus strain IA-61192 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 43222 32 100.0 34 ................................ TTGATAATCGCCTTACTCTGCGCAAGTGGTCTCC 43288 32 100.0 34 ................................ TTTTTATGCCGTGAAAGTCAATTGACAATAAGCT 43354 32 100.0 35 ................................ ATCATAATTAAGAATCTCTTTTGAATCAGCCTTAT 43421 32 100.0 35 ................................ ATCTAATCACTCCCCGTATAAATCAACATCGGTCC 43488 32 100.0 33 ................................ GGCGTTAACTCGGGGATCTCTGTTAAAGCCATT 43553 32 100.0 35 ................................ AAGGTATTGAGGAAAAAATTGCCACTGGCAAAAAA 43620 32 100.0 34 ................................ ATTGCTAACACTAGTAAAATTACCTCGTAGTGTC 43686 32 100.0 36 ................................ AAAATATGTCGCCTCAGATAAAACCCAGTCTGGGAG 43754 32 100.0 34 ................................ ATGGTTAATGTCCAAAAATTAAAAGGTGTGATTG 43820 32 100.0 35 ................................ TAAAAAAATGCAGGCCAAGATAGCACAAAAAAACG 43887 32 100.0 35 ................................ AAATCAAGGGTTGAAAACTTTGTAATTTTTGGCAT 43954 32 100.0 34 ................................ CATTGAATCGCCAGCTACTTTTGCAATAGTATCA 44020 32 100.0 35 ................................ AGCTTTTAATAAGTTGTCAAGACTAACAGTACCAT 44087 32 100.0 35 ................................ ACTAAAATATGCAAAATAATGAATAAAAAGGAGAG 44154 32 100.0 33 ................................ AAAGGAAGATGAGTACTTGGCTAGACGACTTAA 44219 32 100.0 33 ................................ CGACAACAAAAGCTAATAATTTTTTAGAAGAAT 44284 32 100.0 33 ................................ TCTGTCACTATCAGTTGCAACAATTATTGTTGT 44349 32 96.9 34 .......A........................ GAGAAAGTAGAGAAAATGGTTCTTTGTCAGATTT 44415 32 100.0 36 ................................ AGGAACCACGCTGATTGCTTGCGAGTCAAACGGAAG 44483 32 100.0 34 ................................ TGATTTGTTGTATCTCATTTTCTCCTACCTCTCA 44549 32 100.0 34 ................................ AGATTATCCTTAGAATACATTACACCGAAGATTA 44615 32 100.0 34 ................................ ATCCTTGTAATCATCGACATAGATAAAGCCTTTC 44681 32 100.0 33 ................................ TAAAAATTTTGTCTCTGTCTCCTCGATAGATCT 44746 32 100.0 33 ................................ TGCGAGATTAACTTACTGCACATGGATTTTATC 44811 32 87.5 36 ........C..TGC.................. CTAAAAGACTTTCTGATTTTAACCAACCCTGACAAC 44879 32 84.4 34 ........CCAT.C.................. TAAAATATCAGCGTACTCAGACATCACACGTCTC 44945 32 81.2 0 ..T.....CCAT.C.................. | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 98.1 34 GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Left flank : TAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAATGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCTTACTTCTGTAAAAGGAGCGAGTGCGAGCCTGGATTACTCATAAAATGCTGGGAGGCTCGCGCTAAAATAAGCTAAAAAATGGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTATATCATTTCTCTATAAACTGTGCTATATTGCGCA # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAATGGGTGATTGAGATGAGGCAAGGCGTCTTGACTTAACCCAAAGAAGAGCTCCGCTTTCTTCTCCTGCAAGTGAAAAAGAAGTCATTGGTACA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //