Array 1 339155-338869 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMH01000016.1 Listeria monocytogenes strain NRRL B-33092 PROKKA_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 339154 29 96.6 34 ..............A.............. TTTCTTATTTTTATTGATAATTGATCCAGTAAAA 339091 29 100.0 35 ............................. AAGAATGTTTTATACGAGGAAAAAATACTTGATAT 339027 29 96.6 36 ..............A.............. TCGACATAACACATATATTTAAAATCATTAAAACTA 338962 29 100.0 36 ............................. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 338897 29 75.9 0 A.....AG.......CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 93.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGCAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGGAAGGGAAGTTTGGCGGTGTTTGCTTGGGAAAATCTTCCGGAGAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAAATAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 492780-494466 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMH01000008.1 Listeria monocytogenes strain NRRL B-33092 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 492780 36 100.0 30 .................................... TCGACTTCCCTAACATCCTGCCAGGCGTAT 492846 36 100.0 30 .................................... TAAAAAGGCTGTTTTCGATTGATTTATGTT 492912 36 100.0 30 .................................... TGATGCCTGCTGACATCCCCGCCCCTGCCT 492978 36 100.0 30 .................................... AGTTTCTTATTGTGTATTTCTTGATACTCC 493044 36 100.0 30 .................................... CCAAATTTCAAAATACGTTATTTCCATCGA 493110 36 100.0 30 .................................... AATGAAAGAACAACAGATTGTAAAAGAATA 493176 36 100.0 30 .................................... AACGCCCGGAAAAAAATATTGCGTTCATCC 493242 36 100.0 30 .................................... GGAATCCGGAAACGATGAAAGAAGTCAATG 493308 36 100.0 30 .................................... TGCTTTAACTGTAGCCTTTACACTACTTTT 493374 36 100.0 30 .................................... GCGGGAATTTTCATTAAGATACTCCACCTT 493440 36 100.0 30 .................................... TTTATCGCCGAAAGTTATTTGCGAGCTTTC 493506 36 100.0 30 .................................... TAATGTTAAACCAGACACGTCAACTAGACA 493572 36 100.0 30 .................................... CTTTATGCTCACTAAATATTTTTTTATCCT 493638 36 100.0 30 .................................... TTTAAATTATGTGGGTTTAATGAAAAAATT 493704 36 100.0 30 .................................... AAAGATGTTATTTGGGAGTCGACAACTTCG 493770 36 100.0 30 .................................... AAACAACAAGCAAATTCGTGCGACTATTGA 493836 36 100.0 30 .................................... AACAAAAAGCAAGTTTTCTCCGTTAAAATC 493902 36 100.0 30 .................................... TTCGTCATCACTTTCATCAGCTTTTAGTTT 493968 36 100.0 30 .................................... TAGTTAGAACCCTGCTCGACACCTGCGTTA 494034 36 100.0 30 .................................... GGGATTTTCCGTTTTTATATAAATAAGAGT 494100 36 100.0 30 .................................... ATTTAGCGCATACAGGTCTTCTTTACAACG 494166 36 100.0 30 .................................... AATTGTAAGTTCCATTTCGTCAGGGGTCAG 494232 36 100.0 30 .................................... TACAAAGTGAAGGATGATGAAAATGGAGTT 494298 36 100.0 30 .................................... AATCAATTCAACTATAAGGATTTAATGTCC 494364 36 100.0 28 .................................... GAATATTCTTCCCCCATCACTAACAGGT 494428 36 83.3 0 ............CA.....C.....T.A.......G | A,A,C [494453,494459,494462] ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //