Array 1 2192578-2190963 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRU01000001.1 Pluralibacter gergoviae strain MGH183 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2192577 29 100.0 32 ............................. GTTGTAATTAAACCGTCTGGAGAGACTTATTA 2192516 29 100.0 32 ............................. AACTCTTCCAGGTCTTCATCGCCCAGGTCTTT 2192455 29 100.0 32 ............................. TGTTCGAGGATGGCCCGAACTCGGAAACGCGG 2192394 29 100.0 32 ............................. GGCAACGAGGTTGACGATGTGACGAAAGATGC 2192333 29 100.0 32 ............................. GGCCGACTTCAGTTCTTTGAGACCGGCAGACG 2192272 29 96.6 32 ...........................T. CGGAGCGGGTGCGGGAGGCGATAGAGACCCCC 2192211 29 100.0 32 ............................. CCTGACCTGCTGCCTCACCAGGTCGAGCTACT 2192150 29 100.0 32 ............................. TACCTACGCCTGCGCATACGTAAGGTAGGGAA 2192089 29 100.0 32 ............................. ACCAGGTGCCTAACCTGCCGAATGACCTCGGC 2192028 29 100.0 32 ............................. GAGTCCGGCATCAAAATGGTGGTTCACGATCA 2191967 29 100.0 32 ............................. AGACATCATCAGCGGGAGACCACTCCCACAGC 2191906 29 100.0 32 ............................. TACGTTGGATGCAATTTTTTCAAATGATATGG 2191845 29 100.0 32 ............................. CCCACCTGAACACCCTCGACATAAATGCCTTC 2191784 29 100.0 32 ............................. GAGGCCGCATGAAACTTACCCCTGCACAACAG 2191723 29 100.0 32 ............................. TAGCAACGGGGAACGGTGGTACGCCAGTGGTC 2191662 29 100.0 32 ............................. ATTTATGTTCCGGTTCATACGAACCAGATAAT 2191601 29 100.0 32 ............................. AAAACGTTGAGGACATATAATCATGGCATACG 2191540 29 100.0 32 ............................. GAGATATGTGAAAGTCTTGGAGGATCTGATAA 2191479 29 100.0 32 ............................. CAGTTGATATAAAACATCGTTATCAACCTTGT 2191418 29 100.0 32 ............................. CCTTTATCTTCCCTTCAACGGCTCTTACGAGA 2191357 29 100.0 32 ............................. AATGGGAACCCAGGCCAACCTCGTCAACCGAT 2191296 29 100.0 32 ............................. GCGAGCAGCTCTTCCCTCTGGCACCAGCTCTC 2191235 29 100.0 32 ............................. CAACAGGGTGCAAATAGCGTCCCACAGGTCGG 2191174 29 100.0 32 ............................. CGGCGGGCAAAGATGAATAACAGGTCGATAAA 2191113 29 100.0 32 ............................. AAACCGCGTTTATCTACCTCGACCCGATTACC 2191052 29 100.0 32 ............................. TTTGTCGCTCCCGCACCGGGGAAATCGCAGAC 2190991 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGATAAACCGAGACATCATCAGCGGGAGACCACTCCCACAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGTTGGATGCAATTTTTTCAAATGATATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCACCTGAACACCCTCGACATAAATGCCTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCCGCATGAAACTTACCCCTGCACAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGCAACGGGGAACGGTGGTACGCCAGTGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTATGTTCCGGTTCATACGAACCAGATAATGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACGTTGAGGACATATAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : ACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCGTACTTACGGAAACAAAACCAACCTAACCGTGCCGCAATAGCTGACAATGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCTTCACCAGCGGCAGCATCACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGTCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCCTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCGGCCGGTACGCCCCAGCGGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2194316-2192701 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRU01000001.1 Pluralibacter gergoviae strain MGH183 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2194315 29 100.0 32 ............................. TATTTCCTTAATCCCGGCAACACCGCACTGGA 2194254 29 100.0 32 ............................. TATTTGATGAGGTTATGCACGCCATACTCATC 2194193 29 100.0 32 ............................. GACTTTCAGGTAAGACTAAATCCGAAGTGATT 2194132 29 100.0 32 ............................. TCCATGCTCACGCTCCAGTGCATCCTGTTTAT 2194071 29 100.0 32 ............................. GCGCTCATTGCTGGCCTGATACCATGCTATAA 2194010 29 100.0 32 ............................. CGATCTGGTTTCGATATTCATCCATGTAACAA 2193949 29 100.0 32 ............................. TGCTGGCAGACTCCGCCGCAAATCCTTCAGGA 2193888 29 100.0 32 ............................. TGGCCGCTGTAGCTCGTGAAGTCTGCCTGTCA 2193827 29 100.0 32 ............................. CAGTGCGGTATGGCTGCCGGTGCCGAAGACAA 2193766 29 100.0 32 ............................. ATTTGGCTACATCAGCAACGATATCGACTTTG 2193705 29 100.0 32 ............................. GTTGTAATTAAACCGTCTGGAGAGACTTATTA 2193644 29 100.0 32 ............................. AACTCTTCCAGGTCTTCATCGCCCAGGTCTTT 2193583 29 100.0 32 ............................. TGTTCGAGGATGGCCCGAACTCGGAAACGCGG 2193522 29 100.0 32 ............................. GGCAACGAGGTTGACGATGTGACGAAAGATGC 2193461 29 100.0 32 ............................. GGCCGACTTCAGTTCTTTGAGACCGGCAGACG 2193400 29 96.6 32 ...........................T. CGGAGCGGGTGCGGGAGGCGATAGAGACCCCC 2193339 29 100.0 32 ............................. CCTGACCTGCTGCCTCACCAGGTCGAGCTACT 2193278 29 100.0 32 ............................. TACCTACGCCTGCGCATACGTAAGGTAGGGAA 2193217 29 100.0 32 ............................. ACCAGGTGCCTAACCTGCCGAATGACCTCGGC 2193156 29 100.0 32 ............................. GAGTCCGGCATCAAAATGGTGGTTCACGATCA 2193095 29 100.0 32 ............................. AGACATCATCAGCGGGAGACCACTCCCACAGC 2193034 29 100.0 32 ............................. TACGTTGGATGCAATTTTTTCAAATGATATGG 2192973 29 100.0 32 ............................. CCCACCTGAACACCCTCGACATAAATGCCTTC 2192912 29 100.0 32 ............................. GAGGCCGCATGAAACTTACCCCTGCACAACAG 2192851 29 100.0 32 ............................. TAGCAACGGGGAACGGTGGTACGCCAGTGGTC 2192790 29 100.0 32 ............................. ATTTATGTTCCGGTTCATACGAACCAGATAAT 2192729 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGTGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCCGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGACTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : AAAACGTTGAGGACATATAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGTAATTAAACCGTCTGGAGAGACTTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTCTTCCAGGTCTTCATCGCCCAGGTCTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTTCGAGGATGGCCCGAACTCGGAAACGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCAACGAGGTTGACGATGTGACGAAAGATGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCCGACTTCAGTTCTTTGAGACCGGCAGACGGTGTTCCCCGCGCCAGCGGGGATAAACTGCGGAGCGGGTGCGGGAGGCGATAGAGACCCCCGTGTTCCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2206884-2204964 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRU01000001.1 Pluralibacter gergoviae strain MGH183 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2206883 29 100.0 32 ............................. TAGAGAAACGCCGTTTTCCCACTGTTTTTTTT 2206822 29 100.0 32 ............................. TTTGCTGCCTTACCGCCTGCAGAACGTTTAGC 2206761 29 96.6 32 ............G................ CGAGGGGCGGACTTTAACCCGGCAGGATTTGC 2206700 29 100.0 32 ............................. CGTCAACAATGGCTCGGTATATACTCCAGTTT 2206639 29 100.0 32 ............................. CGCTCCTTTCCATGCTTTATTGCTATCGGCCC 2206578 29 100.0 32 ............................. CAAAACATCGAAATCTGATAATTCATTTAAAA 2206517 29 100.0 32 ............................. GTCGCTGGATTGCAGGTGGTAGGCGCGCGACA 2206456 29 100.0 32 ............................. CTGGCTGCCAAAGATGGCGATGCTGCTGGCAG 2206395 29 100.0 32 ............................. GTGATCGCGAATGTCGGTACTCGGCACCGCAT 2206334 29 100.0 32 ............................. GTTGGGGCAATTAGCCATAACAGCTTTATCGT 2206273 29 100.0 32 ............................. GCAGTTCGGTCAGTCAATATCAGGCGGAATAG 2206212 29 100.0 32 ............................. GTCATTGCTGGGAAACACACCCCGGAGAATGG 2206151 29 100.0 32 ............................. CCGGTAAGCCGTGACTCAGTCGATCGCATGCT 2206090 29 100.0 32 ............................. CGCTGGAGGTTATCAGCCTCGCGCAGCTGGAT 2206029 29 100.0 32 ............................. TTCAATGAACTGATCGCCTCGCTGGGGCAGTT 2205968 29 100.0 32 ............................. CGTCGGTGACGATTAACGCAGATCCGAAAAAC 2205907 29 100.0 32 ............................. TTTTAACTCACCTGAACCAGGTCAGCGGTTCT 2205846 29 100.0 32 ............................. CTGAGCGTGCGTCTCAGAAATGGGGAAAGCAG 2205785 29 100.0 32 ............................. AGTGCCCGTCTTGTCACTACATGAAACCCGCC 2205724 29 100.0 32 ............................. AGAGTGTCAGTTGTAGCGACTCGCAACTATGA 2205663 29 100.0 32 ............................. GTTGAAACGTATACCATTGACGTTGCGATGAA 2205602 29 100.0 32 ............................. ATCGACGGCGCTGGAATGGACCAGTCGATGCA 2205541 29 100.0 32 ............................. TTTCGCCAGCGCGGGCAGGATCTGGACGCATT 2205480 29 100.0 32 ............................. ACGCCACCCTTTCCTCAGTCGTGATAGCAGCC 2205419 29 100.0 32 ............................. AAAAAAGTTACCCGCTCTCTAATCTCCCCGGA 2205358 29 100.0 32 ............................. GTGCTGGCCAGACTGACGGTAATGAGCTTGCA 2205297 29 100.0 32 ............................. CGCGTAGCCCACTATCGCAACGGCCGCCCTGG 2205236 29 100.0 32 ............................. GGACTATTTACGCCAGGAAAATCGAGGGTGAT 2205175 29 100.0 32 ............................. AAAGACGCCATTTATGTATTTGCCACGCAGGA 2205114 29 100.0 32 ............................. AGCTGATGCAGGCGCTGAAAGCTGCGGCAGGG 2205053 29 100.0 32 ............................. TGCCGGAGAACCAGTTCGGATTCGCGACCAGC 2204992 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTGTGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTCATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGCATCGAGGCGTTAAACGGCTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCGTTAACACCGGTGATTGAAATCGACCAGATTGAGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2214428-2213301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRU01000001.1 Pluralibacter gergoviae strain MGH183 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2214427 29 100.0 32 ............................. CGTAAATTTGACCCATGCAACAACCCAGCAGA 2214366 29 100.0 32 ............................. GCACGTGAGATGGTATGAGGATGAATATAAAG 2214305 29 100.0 32 ............................. TGAGGAATATATGGCATCTTTAAGTCAGAGAT 2214244 29 100.0 32 ............................. CCACCACGACGGTGTTACCAGTCGTTTGACGA 2214183 29 100.0 32 ............................. AGGAGACGATTAGTCGCGGCCATAGATGCTTC 2214122 29 100.0 32 ............................. AAGGTAGGTCGCTCCGTTTCTGATGTGCAAAT 2214061 29 100.0 32 ............................. TGTGGAGAAAAACTACCTGAAACATCTGATTA 2214000 29 100.0 32 ............................. GTAACGCATCCGAGCCTTCAGGATTGTATAGC 2213939 29 100.0 32 ............................. CGCTCGACATGATTCAGCATAAAATTGGCCGC 2213878 29 100.0 32 ............................. CATATCGTATGCTGGCTATCGGTATTTATGCT 2213817 29 100.0 32 ............................. CGATATTTTTGCATACAGCCAGTATGAAGCTG 2213756 29 100.0 32 ............................. GATTTACACAATGTCACTTCTTTTCCGGAATC 2213695 29 100.0 32 ............................. CTGGACTTGTCCGCGTGGGTGAATGCGACAAC 2213634 29 100.0 32 ............................. TCATCAAAGTACATTGCGCCCGCGCTAAGCAT 2213573 29 100.0 32 ............................. GGCCGTGGTATCCTCTGCTACCGACTCCAGCC 2213512 29 100.0 32 ............................. AGCTGGGATTCGATCCGTGGTCCGCGCTGCAA 2213451 29 100.0 32 ............................. TCTATGATAGTAGGCCGAATTAAAAATAATTT 2213390 29 100.0 32 ............................. CTTCAACTACAGCGTAACTGGCCTGTCTGGGT 2213329 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGGGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGGCCACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : CGCTGAAAATGGCATCACGACAGACAGCATTCGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2663814-2663666 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRU01000001.1 Pluralibacter gergoviae strain MGH183 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2663813 28 96.4 32 ..G......................... GTCAGGAAGAATCCAGCAAAAAAGCCGAGCTG 2663753 28 100.0 32 ............................ AACGGCGACGAGACGCAAACTCTCTCTCTGTC 2663693 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCCGTTAGGCTCGCGCAGCGCGGCCTCCGGCGACGGAAAGGCGATAGAATGACGTGACAGCTGAACCAGACGCATGCTCTACAACTCCGGGCCTGATAATGAAAGAAAGCGTAGCCTAAACTCGCTGTCTGAACTGGTATTACGCCCGCGTCTGCTCAGCTATTTGGCGTGCTTACCATGCGAAAAATTTAGCGTGTTGTCTATCACAATTATGTGGCAACAGCGGCAGTTTTTTGCAGTGCGCGATTTCATCGCCCGGATGGAGGCGCCAGTGGCGGAATCATCTGCGTTTAGCGGGCACATGCAGGCAGGCGCCGGTCAGCCGGGAATTAAATTTGGCAGATTTTTTCTCAGGCGATGCGTTGAGCAGACCTTTTTTTTCCGCTGTTGCTAAGTTATTGATTTATTGATGCCTGATTTGTAACGATGAAAAAAGGTATTGGCGCAAAATTGAGGGTAATTCTTTTTTGAAACAGTGCGCTATAGCGATTACCCTCTA # Right flank : ATTTTCCCCCTGATGGCTTAACTCCACTGAAACTATTGGGGATATGAGTGAGACGTAGCGATCACAGTGAGAGGCGTCAATTTTCAGACTCTAACCTGTAGAAGGATAGTCTGTTTCAGTGTAGTTTGAGTTTGAGGACGCTTATACAATGCATTTGTTAGCCACTGAGAAAATGAGATGACGCTTCATGATTACACCGTTAAGTCTTGCGATGCTATATACATAGAAGATATACCTTGTATCCTCCATCCCAACATCGCATATCGCTATCTGGAATACACCGGGATGCAAAACAGAATTATCCAGGAGTGGGATTTTCCTTCCGGTTATAAGGCGTATGCCGATCAGTATCGCCATTTTCATATAAACCATCCATTTATGGCATATCGCTCTGCTCTTAATGATATTAAATCGGGAAAGATTATACTGCTGAAAAGCCTTCATGGTGGTAAGGAAATATTTAGTGTTCAAACACGATCTGGTAATTTGTGTACAGATCT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //