Array 1 242977-241372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDQ010000001.1 Salmonella enterica isolate 4589_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242976 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242915 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 242854 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 242793 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 242732 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242670 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242603 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242542 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242481 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242420 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242359 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242298 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242237 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242176 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242115 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242053 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241950 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241889 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241828 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241767 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241706 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241645 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241584 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241523 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241401 29 96.6 0 A............................ | A [241374] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261151-259109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDQ010000001.1 Salmonella enterica isolate 4589_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 261150 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 261089 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 261028 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260967 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260906 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 260845 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260784 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260723 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 260662 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260601 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260540 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260479 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260418 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260357 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260296 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260235 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260174 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260113 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260052 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259991 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259930 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259869 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259808 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259747 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259686 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259624 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259563 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259502 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259441 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259380 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259319 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259258 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259197 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259136 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //