Array 1 3033-2416 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000002.1 Streptomyces sp. YIM 98790 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3032 37 100.0 35 ..................................... CTCGTCGTATCCCGAGAGTTCGGTGGCCCGGTAGT 2960 37 100.0 36 ..................................... TTGGCGATCCGGGTGCCGACTGCTGACTTGAAGATG 2887 37 100.0 36 ..................................... AGCGCATGCAATGGTGGATGCGCCCTGGGCAGGGCT 2814 37 100.0 35 ..................................... GACGGCTCGAAGACCCGGGACGCCACCGCGCTGGT 2742 37 100.0 36 ..................................... TCCGCGGGCCGGCGCAGGTTCGCGGACGGCACGATG 2669 37 100.0 35 ..................................... GTGCTCTCCACCACGCCCGAGACCCGGGCGGTCCC 2597 37 100.0 36 ..................................... GATTCCGGCCGGGCCGTCCGTCACGTCCCACGGGCG 2524 37 100.0 35 ..................................... CAAAATCCGGCCCCGGACCGAGGCCCGGGGGTGTG 2452 37 91.9 0 .............................A..CT... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.1 36 GTGGCGGCCGTCCTCCGGGACGGCCGAGAGTCGCAAC # Left flank : CATGCAGGCCCGCCTGCTCGCCCGCCACGTCCGCGGAGACCTTCCCGGCTACCTGCCCTGGACGGCTGCATGATGGACCTTCTCCTCACCTACGACGTGGACACCACCAGCCCAGAAGGCGCCAAGCGACTCCGGCGCGTCGCCAAACTCTGCGAAGGCTACGGCCTCCGCGTCCAAAAATCGGTCTTCGAAATCGTCGCCGACGACGCCGACTTGCTCCGACTCTTGGCACGTATCGACAGCACCATCGACACCGAACGCGACAGCATCCGGATCTACCGCCTTCCCCACAACGGCCTTGCCGATGTCCAAACCCGCGGGATCGCCCGAGTACAGTCACACCGGGACGACCTCGTCCTCTGATCAACTCGCTTCGGAACCACAAGTGCACACGCCAAACGCAACTCACACCGAAGCAAAATGTTGGAAATGAGTGAAACGCCAGGCGCAACTTCCGCCTATCGCGACACGCAGTTCGGCGTTATCCCTGGCCAGAAACC # Right flank : GCGATGGCCAGGCCTGCCTTCGGTACCGAGCTCGGCGCTGGCCGTCCCCGGGCGACCCTGCACAGCGGTAGTCGCGCTAAACAGCCAGTTGGAGGGCAGCGTCGAGGATTTTGGCGGCTTTGTTGATGCTGCCGGGCATCAGGTGCCTGTAGGTTCGGTAGGTCTCTTCGATGGACTTGTGGCCCATCCATTCGGCAACGTCCGTGATCGGTATGCCGTTGCCCAATGCGTTGGAGGCGAAGAAGTGACGGAAGCCATACATACCCACCCCCTTCTGTGGAGGCAGCTTCTCGAACAGTTTTCGAACGCGGCGCCGCTCCATCGGTTCCGTGAAGTATCCGCCGGGACCTCGGAGAAGATAGCCATTCGGCGAGGCGCCATGCTTTTCTGCGAACCGTTCCATGGCACCCCGCACCGTGCATGGCAACGGGACCTCCCTGAACTCACCCGGTTTGCGATGCTTCAGCTTGGCGGGCATATGCAGGTTCGAGTGTATTTGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGTCCTCCGGGACGGCCGAGAGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-19.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 35922-34551 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000024.1 Streptomyces sp. YIM 98790 Scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35921 29 100.0 32 ............................. CGGATCAGGTTGTGGTGCCTGCCGGGCACGGT 35860 29 100.0 32 ............................. GCGACCTGTGTTTCGTGGGCGACACCGCCCAA 35799 29 100.0 32 ............................. CCGGTGCAAGTCCTCGGCCACGACCCCCGCCG 35738 29 100.0 32 ............................. AAATCGCTCATGCTGTTCACGAAGACCCGCCC 35677 29 100.0 32 ............................. AGCCACAAGTTGACGCGGGATGCGCTCAGGGC 35616 29 100.0 32 ............................. CAACGGGGCTTGTTCTGATGTGGGCACCGCGC 35555 29 100.0 32 ............................. ATCTCCCGCAGCGCCTGCCCGTACCAGAGCTG 35494 29 100.0 32 ............................. TCGTCGGCCATCTGGTAGCGCCAGGCGGTGGC 35433 29 100.0 32 ............................. CAACGGGGCTTGTTCTGATGTGGGCACCGCGC 35372 29 100.0 32 ............................. ATCTCCCGCAGCGCCTGCCCGTACCAGAGCTG 35311 29 100.0 32 ............................. TCGTCGGCCATCTGGTAGCGCCAGGCGGTGCG 35250 29 100.0 32 ............................. CAGCAGCTCGGGCCGCGCGCCGTCCTCGGCCG 35189 29 100.0 32 ............................. TGCGGGCAGCTGCGGCGGCCCAGTTCTACGGC 35128 29 100.0 32 ............................. CCTGTGGTCGTGCGGTGCTTCCTGGACGAGCA 35067 29 96.6 32 .......................A..... GACCCGGGAACGGGAGCGGGCGGAGCAGCCCA 35006 29 100.0 32 ............................. TGCTGATCACCCGCGACCGCGCGAGCGGTCTC 34945 29 96.6 32 G............................ TGTCCAGCACCTCAACCGGGGCGATCAGGCCC 34884 29 100.0 32 ............................. GAGACCGACACGAACAAGGAGAGGACCTGTGC 34823 29 96.6 32 G............................ TGTCCAGCACCTCAACCGGGGCGATCAGGCCC 34762 29 100.0 32 ............................. GAGACCGACACGAACAAGGAGAGGACCTGTGT 34701 29 100.0 32 ............................. CGGCTGCCCGGCAACCTCGGCGGTGAAGACCG 34640 29 100.0 32 ............................. TTGGTGAAGGACGGCGGGCCGGGCGGCCCCGG 34579 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : CCACGGTGAGGAACCCATCTGGTGACCGTCATCGTCCTCGCCAACTGCCCCACCGGCCTGCGCGGATTTCTCACCCGCTGGCTGCTGGAGATCTCCCCCGGAGTCTTCCTTGGCGCCCCCTCGGCCCGCGTACGGGACATCCTGTGGGCCGAGGTACGCCAGTACTCGGGAAAGGGACGAGCCCTGCTCGCCTACCAGACCAACAACGAACAGGGCTTCACCTTCGAGAGCCATGACCACGTCTGGCATCCCATCGACCACGAGGGCCTGACCTTGATCCACCGCCCCAGCCTCGCGAATCCCACCGGAGAGACACGCGCCCAGAACCCCCCGCCCCAGGGCTGGAGCAAGGCGGCCAAACGCCGGCGCTTCGGCAACCGATAGAGCCGAGGAACTGGCCCACCCTTTCGACCTGAAGGTCAGGATTACACCCAATGTCGGAATCTCTGCAAGCAAGTAAAAACTGGCCCCCCGCAGGATAAAGACGCTGGTCGACTCCT # Right flank : CACTCCTACCAGATGCAGCACCTGGGGGTTCAGTCGTTCTCGACTGAGAGGTGCATACTCATGCCGCGTGCGGGGTGAAGGTGACGCGGGAGTCTTCCGCCTCCAGGGACACGTTCAGCGAGCCGTTCAGGGCCTTGGCCAGGCGACGCAGCAGCGGAAGCGTGGGTACGGTGTCACCTCCCTCGATGCGGGAGATCTGCGGCTGGGTCATGCCCGCACGCTCGGCCAGTTCGGCCTGGGAGAGTCCCATCTCCATGCGGCGGTCATAGATGGCTTGCCCGAGGTCGCCGGCCAGACGGGCGTCGACGTAGTCCTGGTCGTACTCAACGGCCTCACCGAGAAGCTGCCTGGTACGACGCGTATTCCACTGGCTATGGTTCATCACGCCTCCCTTGTGCGGTCGTAAATGTGCTGCGCCGGGCCATGCTCGGCCTCGCAGACCTTCTGGGCTTGGTGGGCTCGTTCGATTTCGGCTGCTTCACGCATCCTGGTCTTGCGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46908-46456 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000024.1 Streptomyces sp. YIM 98790 Scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================== ================== 46907 29 100.0 32 ............................. GTCATGTCACGGGAGGTGACAGCGAAGGACGT 46846 29 100.0 32 ............................. GATGCGGACGCCGTCCACAGTGAGGCGACCGG 46785 29 100.0 32 ............................. GCGCCGGCCGCGATCACCGGGTCCTTTGAGGT 46724 29 100.0 32 ............................. AGCGGGCGTGGCGGCTCCTCGCGGGCCGCGAG 46663 29 93.1 88 .......................A....T CCGACCTTCACCACCGAGCGGTGGCGGGCGGGGCCCCCGCGTCTACGGGAGTGCCCCGGCCATTCAGTACCCCCAGAGGTGGGCTACA 46546 29 86.2 31 .C..........T.....A......C... GTCGGTGCCCGCTTCTACACTGCCCGTCACA A,A [46523,46526] 46484 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ======================================================================================== ================== 7 29 96.6 41 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : | # Right flank : TAGGAAGGCCGGGCGCCTGTGTGGCGTGCTGAATGCTCCCTGCCGCTGCGGGGCTGAAAGATCCGAGGAACACATGCACTGAAGAACAGTTGTTCGGATCATCGAATCTCAGATCAATAAACCAGGAGGGCTGAGCGGCACTCAGTCACAAGAGAGCTTTAGGTTTAGAACTAGGATGTCCGAGCTCCAAGAGGGTCGCACAACAAAGGCACTTCACCTGAAACATGCTAGGGTCGATCTGAAGGCACGTCAGATGCACGGCTCCCGACAAATGAAGTCGGGCCCGTGTACTTCTCGTTGGGGCGAGAAGGACGGGCCCGACATGTCTTGCCAGTGCATTAGCCAAGACGAAGGAGAGTGTACCTGTGGGTACCACGAAAGGGTCCGATCACTCCTCGGGGTCCCCGCCCCATCCTTGTGAGCGGAAGTTACTCTTTGCGCTTCTCGCCGCCTGCTTGGCGGCACCCACCCCGTATGCCCCCATGCTGTGGGGAGCCGTT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.79, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5597-4226 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000124.1 Streptomyces sp. YIM 98790 Scaffold124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5596 29 100.0 32 ............................. CGGGCCGTGTGGACGATGGGCAGCCAGCGCGG 5535 29 100.0 32 ............................. CGGGCCGTGTGGACGATGGGCAGCCAGCGCGG 5474 29 100.0 32 ............................. ACCTGGCCGCCGCCCTCACCCAGGTCACCCCC 5413 29 100.0 32 ............................. GAGTCAGCCCATGAGCGGGAGCCCGATATCCG 5352 29 100.0 32 ............................. GCATGGGCGACGCGCACACCAACAACGCCCAC 5291 29 100.0 32 ............................. TCGGTGTTCACGGACACGCTGTCGGAGATATT 5230 29 100.0 32 ............................. CAGGCTGTGAACACCGCCGCACCCGTCCGGTG 5169 29 100.0 32 ............................. CAACTCGTGTGCCGCGCTCGTGGCTGCCTCGA 5108 29 100.0 32 ............................. TTCCCCAGGTCCGGCGGGGTGGAGGCGGTCAG 5047 29 100.0 32 ............................. CCCGGCCGTCCGGTCCGATTCCAACTGGCCGG 4986 29 100.0 32 ............................. CGCTTCCTGCGGTCCCTTCCCGCCGCGATCAA 4925 29 100.0 32 ............................. TCGATCAGGGTGTCTTTGCCCTCGAATGAGAT 4864 29 100.0 32 ............................. GAACTCGCCCGAGCGCGCCGGGGCCGGGGCCG 4803 29 100.0 32 ............................. TACGCCCGGATTGTCGGGAGGCTCGGGCGAGC 4742 29 100.0 32 ............................. AACCCGGCCAGCGCATCGGAGGTCTGCCGGTA 4681 29 96.6 32 ............................C AACAGCAAGAGGCCCGGTTGCCCCCGGGCCTC 4620 29 100.0 32 ............................. AAGGCGAGGGAGAAGCCGTAGCGCTCGGCCAG 4559 29 100.0 32 ............................. TCACCGCCGCCGATACCCGCGTAGCCGATGTT 4498 29 96.6 32 ......................G...... CATCGAAGAGCTGCTGTCCGACGCTTTCGACG 4437 29 100.0 32 ............................. CACTACCGGATCATCAGCGGGCGGCTCTACGT 4376 29 100.0 32 ............................. AGGTTTCCTACCGCGCTGACGCCAAGGCCCGC 4315 29 100.0 32 ............................. CCGGCGAGCACTGCTGAGGAGATCGTCGGCTA 4254 28 82.8 0 ..............T....C..C.-..T. | T [4239] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 CCGGTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCTTCGATCTATAGAAGACATCCTGCTTCAGTGGCTCCCAAAGTCTTGAAACCTGCACCTGGAAAGGGGGGGAGATCTTTCCCAGGTCGTGCAGGGCGGCCCAGAAGGCAAGCATGAGACGCGCCTCGCCCGGCACCATCCCAAGCTTGGAACTGATGTGCCGGCGCTGCTCCTCGCCCACGACCTGGTCCCACAAGTACAGAAACACCGCTGCGGTGTCCAAGAGATGGCACACCACAGGGTACGGCCGGGGCAGCCCGGACTCCTTGCCCCACAGTCGTACATCGATGCACTTATCCAGCCCACGAGGAAGCCACGCGTCGGTCATGGCCACAGGGATAGCAGGAGCCGCTGACACTCGGCCCGGGCCCGGGGATCTGCTGTGCTCGTAGACTCCACCTGTGGCACAGGGATCCACCCATGGCTCGGCAGTCAGCCAAGTGTGCTCCCCGAATGGTAAAGGAATTGCAAACCGCTCATAACGTCGCAGGTCACGAAGT # Right flank : AAAAGTGGTTCTGTCGCAGGTCCTGTGGCGCGGTGACTGAGCGTTAACTGAGGAGGATGCGCTTCCGGAGCAGGGGGAGCCTGGCGCGGCCGAACATTTGCCGTTTCAGTATCTTGGTCCGGTTCACTGTGCCCTCGACCGGTCCGGAGCTGTAGGGCAGGGTGAGGCCGGCGACCACGGCCTGTTGCTCTTGGCGGAGGCCGGTGACGAAAGAGGTGAGGTCGGGCAGGTCGTCGGCGAGAACCTTGTCCATCCAGTCCTCCAGCCGGTGGCCGTGGCGTTTGGTCATCAGCTCGGCGAAGGCGCGGACGTGGTGGGCGGTTTTGTTCAGTTCGGGGCAGCGGTGCAGGAGGTTCGTCAGGGCCCGGATCTGCTCGTCGGTGAGGCGGTCGGGGTGGCGGGTGATCCAGCTGGTGACCTGCCGGACGGACGGGGGCCGACGGGCCGGCTGGCTGTGCGGGGCGGCGTCTTTGAGCTGTCGTATGTAGTGCTTGACCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17786-15438 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000124.1 Streptomyces sp. YIM 98790 Scaffold124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17785 29 96.6 33 ............................A GGTCAGGGGCGCTTTCGGCCTCACTCGTCAATC 17723 29 100.0 32 ............................. AAGTGACGGTGCATCTGCTGTCGCGAGGGGCC 17662 29 100.0 32 ............................. GCGGCAGTGGAGGCGGATATGTCGCTCGGTGG 17601 29 96.6 32 ............................A GCACCGTGGCGATCCCCTCTGACCAGCCGCCG 17540 29 100.0 32 ............................. CAGCACTTCCGGCGGATGCTGCGGCTGATCGA 17479 29 100.0 32 ............................. CGGTGGCGGCCGGTGGTGCTCCAGGCGCTCGG 17418 29 100.0 32 ............................. GCTCACAGGTACTCCTCGGCATCACGGAACGC 17357 29 96.6 32 ............................A GCCGTGAGCGAGCGCCAGCCCGGTCCACGTCT 17296 29 100.0 32 ............................. CCCCGCGCGTCGGTGTCGTACTTCAGCAGCGA 17235 29 100.0 32 ............................. TCGGGGGACGTGAGCACGGTGCCATCGATGCC 17174 29 100.0 32 ............................. ACGCACCGTGCGCTGTTGCCCAGCAGGGTGAC 17113 29 100.0 32 ............................. CTGCTCTCGTCGATCCCGTCGATGCCGGCGGC 17052 29 100.0 32 ............................. CGTCCCTGCCGTACGGTCGCGGCCGCGAGCTC 16991 29 100.0 32 ............................. TTCGGATGAATTCCATGGAGGAGTTGTGCGGG 16930 29 100.0 32 ............................. GCGGCGCAGGACGCCGACGCTGAGGCCGAATC 16869 29 100.0 32 ............................. GACGACGCCGAGGCAGACCTGGGCCGGGTCCG 16808 29 100.0 32 ............................. ATCATCTGCTCGGCCGGTGCTCGGCCGAAGCG 16747 29 96.6 32 .............A............... TGGGAGGACGTCCCCGTGCCCGAGTGGGGCGG 16686 29 100.0 32 ............................. TGGGAGGACGTCCCCGTGCCCGAGTGGGGCGG 16625 29 100.0 32 ............................. CGCTGGCCTGCCCCCACTTCACCCTCATGCGG 16564 29 100.0 32 ............................. GAGTCCGTCACGTCCGCCGGGCTCGGTACGGT 16503 29 100.0 32 ............................. TCGTCCAGGTCGAACACGCGGTCTCCAATGGG 16442 29 100.0 32 ............................. ACCTACCGCGCCGCGACGGCAGCGGCCGGGAC 16381 29 100.0 32 ............................. GTGACCTCGGACTCGCGCATCTGCTGCCGCAG 16320 29 100.0 32 ............................. TTGTTCCCGTCCTTCGTCGTGAGGTGCCGCAC 16259 29 100.0 32 ............................. CACAGCCGGGTACCAGGCCTCCTGCACCTGCA 16198 29 96.6 32 ............................C CGCCGTCTCCGCCCGGCACGACGCCCTGGCCA 16137 29 100.0 32 ............................. ACCCGCTGAGCATCGGCATCGACCCGACCGCC 16076 29 100.0 32 ............................. GTATGCGCGGCTCACCGCTGTGCTGAGCTGCG 16015 29 100.0 32 ............................. CTGACGTGGCCGTTGAGCTTGTAGCGGCCGGC 15954 29 100.0 32 ............................. TCGCCGCCGCACAACGACGGCGGCCGCGCGCT 15893 29 100.0 32 ............................. TGCGACTCCAAGTTGGTGGAGTCCCGCCAGCA 15832 29 100.0 32 ............................. ACCCGCTGAGCATCGGCATCGACCCGACCGCC 15771 29 100.0 32 ............................. GTATGCGCGGCTCACCGCTGTGCTGAGCTGCG 15710 29 100.0 32 ............................. CTGACGTGGCCGTTGAGCTTGTAGCGGCCGGC 15649 29 100.0 32 ............................. TCGCCGCCGCACAACGACGGCGGCCGCGCGCT 15588 29 100.0 32 ............................. TGCGACTCCAAGTTGGTGGAGTCCCGCCAGTA 15527 29 100.0 32 ............................. GGCTGCATCGCCCTCGACGGACCAGGTGAGGC 15466 29 96.6 0 .........A................... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : CCGGAAAGACCCGCAGTTGGGAGCCCCGCTGCCCAGATTGTCACGACCGCCCGCCCTCGGCACCTGAGGCTCGTACGCCACTGGCCCTGGACCGACATGATCACAGACTTCCTGGCACAGCTCGAAACTCTCCCGAACCCCGGCTGACCAGCACATTCCCGTCCCTACGAGCCGCACCACCACCACAACCGGAGCCGTGAACCCGGCGCCCTCCCGAGGCGACAACCGGGACCTCACCGTGACCGCGAACAGTCCGAACAACCGAAACGGCCCGCCAAAGAAACCGACAGACCGTCACGAAAGATCGAGGTTAGGCTTCCCCTGTGACCAAAAGGGCTTTCTGTAGTCAAGTCATCGCCTTGGGTGGCGTGGGCTTTGGTAAAGGAACTGCAAACCCCCTGTAGTCTCGCAGGTCAGGAANTAGTCAAGTCATCGCCTTGGGTGGCGTGGGCTTTGGTAAAGGAACTGCAAACCCCCTGTAGTCTCGCAGGTCAGGAAGT # Right flank : GGAACCGCTGCCGTCAGTGACAGCCGGCTGCCGTGCTTGGAGGTGCTTCGACGCGGAGGGAGGATTTGCAGTCGTTCTCGGGTCTTGTCCGGGTTCTGGTTTCAACGTGGCCGTGGGGTTCGATTGGGTTCTTCGTCGTCGGTTTTGTGGTGAGCAGCGGCTGGGAGGTGATGGGCTGGGTTTCTACCTCCGCGTTGGAAGGCGATGAGGGTGAGACCGTCGAAGTCGATCGGGTCGCGGCGTTGGGTTCCGGCGGTGCGGAGTTCGAAGCCCTGTTCGTTGTCGGCGGGGTGGGCGAGGACGGCTGTGCCGGTTCCGATGGTCGCTGCGACGGCGTTCCACAGTTCGTCGCGGACGCGGGCGGATACGGTTCCGACGTAGAGCTCGGGGGTGACTTCGAGGAGCCAGCGGGTCAGGGCGCCGCGCAGGTGGTCGGGGACGGCGGTGGCGGCGAGGACTGTCATGGAGGGCATGTCGGGTGCCTTTGGGTGTCAGATGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-1351 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000382.1 Streptomyces sp. YIM 98790 Scaffold382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 36 ..................................... GCCTCGGCCCGGACGTCGGCCGGGGCCGAGGCGGTC 76 37 100.0 36 ..................................... ACCGTACCCCAATGAACGGCATTCTGTCGCTGTCAG 149 37 100.0 35 ..................................... CTCCGCGTTCGCACCGCCGACCTGATCGAGGACCT 221 37 100.0 37 ..................................... TCGCAGGTCTCGCAGTCGGTCTTCTCCAGGCACCGTG 295 37 100.0 38 ..................................... CCGGTGCACTCTGGGTCCCCGCCGCACGGCGTGGCCTG 370 37 100.0 34 ..................................... GCCGAGCCGAGCACGTGGCCGTGGCGGCAGCGTG 441 37 100.0 36 ..................................... CACCCGTACTCGACCCCACTCAGGATCGCGCAGCGG 514 37 100.0 36 ..................................... ACCTCCCGCGACCTCCGCGACCAGATCATCACCGCC 587 37 100.0 35 ..................................... AAAGATTGGACGCCGGGACGGCGCCCGGCACCCGT 659 37 97.3 35 ...............T..................... GCGGCCACGAACGGCTCGTCGATCGGGATGACCTT 731 37 100.0 35 ..................................... CTGTCCGGTACCGGCTCCATCCGGTCCGGGCGGAC 803 37 100.0 38 ..................................... TTCGTCAGCCTGCGGTGACCCGCCGAAAAGCTGCGCCA 878 37 100.0 35 ..................................... AAAGATTGGACGCCGGGACGGCGCCCGGCACCCGT 950 37 97.3 35 ...............T..................... GCGGCCACGAACGGCTCGTCGATCGGGATGACCTT 1022 37 100.0 35 ..................................... CTGTCCGGTACCGGCTCCATCCGGTCCGGGCGGAC 1094 37 100.0 38 ..................................... TTCGTCAGCCTGCGGTGACCCGCCGAAAAGCTGCGCCA 1169 37 100.0 37 ..................................... AACTGTTACTGTAAAACAGTCACAGCGGCACCGACCG 1243 37 100.0 35 ..................................... CGCGCTGGGGGACGTCGGTGGCGCCGCGGAGGAGA 1315 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 99.7 36 GTGGCGGCCGTCCTCCGGGACGGCCGAGAATCGCAAC # Left flank : GGG # Right flank : | # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGTCCTCCGGGACGGCCGAGAATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 152-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000167.1 Streptomyces sp. YIM 98790 Scaffold167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151 29 100.0 32 ............................. TGTGCGTGCGGACGCCAACTACTCACCCGACT 90 29 100.0 32 ............................. GTCACGTCGGCGAGTTCGTTGACGAACCGGCG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GACTACGGGACAGAGCCGCTAAATTGCGCCGCCCTCGCCCTCGCCCTCGCCCGGGCCCGGCGCCCCCTCGCTCGTCCGACAATCGCAGTCCACAACGCCCCCCCAGAGCGATCAAGTCCGCACTCGGTGAAGAGGCCGGTTCCATGAGTTCACCGACCAGTTGGGTCAGCATAGGCCGACGCACTCCCGACAACGCGCTCGTCGAACTCGGTGCACTGACCTCTGCGAGCGCCACACGGCCCGAACAGGGGCTTCATCGTCGAAAACCACGACCATCCCCTGGCTCCCCATCGCCGGAAGACCCACCGGGGAGACGCATATCCCGAACGCCCATGCCAGGGATGGAGCAAGGCGGCTCAACAGCGGTGCGTCGGAGACCGGTAGAGTCGAAGAATCCGCTCAGCCTTTCGACCGTAATACCAGGATCGCTCCTTATGTCGGAATCTCTGCTAGTGAGTAAAAACAGGCTTCCCGCGGAATAAAGACGCTGGTCGGCTCCT # Right flank : C # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12817-11993 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTLH01000167.1 Streptomyces sp. YIM 98790 Scaffold167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12816 29 100.0 32 ............................. TGATCTCCCAGGTTCATGGCGGCTCGTTTGAA 12755 29 100.0 32 ............................. TCCTGCATGGCCTGGCTGCCGGATTTAAGTGC 12694 29 96.6 32 ............................T CGGATGACCAGGCCGCCGAGGATGTCGTTCTT 12633 29 100.0 33 ............................. ATGGTCAGGACGTCGTCCAGGACCACGTCGCGC 12571 29 100.0 32 ............................. CACATGGCGGCCGCCCCTTCGGGCCCGTACTG 12510 29 100.0 32 ............................. GGGCTGACCGTGCCTCGGCGCCGGAGGGCTGA 12449 29 100.0 33 ............................. CGGAGAAATCCGCGAAGTCCCCGGAGTGGAAAT 12387 29 100.0 32 ............................. GGAACCGGCCCGACAACTGGACCGTGCACGCC 12326 29 100.0 32 ............................. ACCGTGCGGTTGGCGATGCTGAGTGCTCCGGT 12265 29 96.6 32 ............................T TTTGGCGCCAGCACGGATGCCAGGCTGCCGCT 12204 29 100.0 32 ............................. ACCCCGGCGACCAGCATCAGCATCGCGCCGAA 12143 29 100.0 32 ............................. GCCCCCGGCGCCGTCCGACCGGCCCGGGGGAT 12082 29 100.0 32 ............................. CTGATTGGCCGTCAAGCTCGCGTAGTTGTCGC 12021 29 93.1 0 ..................C..A....... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GGC # Right flank : CACTCCTGCCAGATGCAGCACGGCGGCTCCTGTGCCGGTGTCTGCGGCCATTCGGCTGGCCGCAGACACACCGGTCTGGAAAGGATCGATTGGAGGCCACAGGCCTCGACGATCATGGCGCCTTGGATTCGTCGTGAGACGCTGCGCCGTGCCCCATCCGTGCCCTCCAGAGCGGTCAGCACTGGTCAACAGCGGTGCAATCGGGGCTTCACCGGGGTGTCGCCGGGAGACCGTTTGCACAGGTCAGGGGCGGTTTGCGCATTGGAGAGCCGGTGATTCCCAAGCTCAGAGCGCGAGTTCGATTCTCGTCGCCCGCTCTCACCCAAACCCCAGGTCACCGACCTGGGGGTTGTTTGTTGCCCAGACCCCTCCCCCACCCCCGTGCCCTCCACGTGCCCATCTCCACGCATTCGCGCAATCGAGGGAGGTGCGTACCAGTCAGCCGGCGAGGGTGGCGTCCAGATGGTGCTGCACCGGGTCGTACAGGCCATAAGGCACGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //