Array 1 1261524-1259725 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDY01000017.1 Streptomyces violascens strain NBRC 12920 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1261523 30 93.3 31 ............................TG AGCGAGATGCCGCCCCGGGGGGCGCTGGAAC 1261462 30 100.0 31 .............................. GGCACGTCGGACGGGGGGTCGGCAAGACGGG 1261401 30 100.0 31 .............................. CGTGTTTCCTGGGCCGGTGTGGCACTCCGTT 1261340 30 93.3 31 ............................TG GCACAGGATCATGGACGGGTTCGAGACGGCA 1261279 30 96.7 31 .............................G ATGCATACGGATCCGCCGATGATGTCGGTCT 1261218 30 96.7 31 .............................G CATCGCCGTCGCACTCGGCCCGCAGCAGGCA 1261157 30 96.7 31 .............................G ACGAGCGCGAGGCCAAGGCCCGCAAGGCACG 1261096 30 96.7 31 .............................G CATCAGGGCCGCGCGGCTGTACGCGAACCTC 1261035 30 100.0 31 .............................. ACGGCGGCCTCACGCTCGCGCGCACCAAGTC 1260974 30 96.7 31 .............................A CGCTTCATCTTGGGAGGGGTTTGAGCGGGCT 1260913 30 100.0 31 .............................. CGCGGAGCGGGTTTTGAATTCGCGCAGCGAA 1260852 30 96.7 31 .............................A CTTCCTCACCGGACGGCCCGTCAGTCTCCAT 1260791 30 96.7 31 .............................G ACTGGTTGTTGATCGCCAACCGGATGGTGAT 1260730 30 96.7 31 .............................G GCGTCGGCCAGAACGGGACCGGTACCACCAC 1260669 30 96.7 31 .............................A GGCCGGCGACACCCGCGATGGCGGGGAGGAT 1260608 30 96.7 31 .............................T GCACCCACAGCGTCTGGCCGACCGGAGGGAC 1260547 30 96.7 31 .............................G GCGTGCTCACGGGCCGGATTGCGGACGCGGT 1260486 30 100.0 31 .............................. GCCACGAGCAATAGCACCGGTTCCTGCCCCA 1260425 30 100.0 31 .............................. CATACCTCAAGGCCGCTCTGGAGGCCTCCGC 1260364 30 96.7 31 .............................T GGGCGCAGGTACCGGGCCTGGCCTTGAGTGG 1260303 30 100.0 31 .............................. CGGACCCCGAGCGCCTGGAGACCCTGAAAGC 1260242 30 96.7 31 .............................G CCTTCTGCACCGCGGCCTCCAGGCCGTCCCC 1260181 30 96.7 31 .............................A CGCGGTCATACTCAGCGAAGGTGCGTCGCAT 1260120 30 100.0 31 .............................. AGGCCCTCACACCCGTGATCGCGGCGAGGAT 1260059 30 100.0 31 .............................. TCTTTACATAGCAGGGTGTCGTCAGGAGAGG 1259998 30 93.3 31 ................C............G AGCAGGTTGACGGTGAAGGCGGTGAGGCCGA 1259937 30 90.0 31 ..............T.C............G GCTGATCTCAGGCCCTCGGCCGGTGTTGGTA 1259876 30 86.7 31 .............TT.C............G CCATCAACGTCCAGGGCGGTGCCGACGGGGC 1259815 30 86.7 31 ........T.T.....C............G GCGGACGATGAGGGCGGGCGGCAGGTCCCAG 1259754 30 70.0 0 ..........T.....CCA.....ATTT.A | ========== ====== ====== ====== ============================== =============================== ================== 30 30 95.6 31 CTGCTCCCCGCGCACGTGGGGATGGACCCC # Left flank : CGGGCCCGGACGGGCTGCGGTTCCGCACCGTGCTGCGGTGGCGGCGGCTGGAGTGGAACGAGATCGCCCGCTTGGAGGATCTGCGGGTAGCCGCTGCTGACACCCGAATCAGAACTCCGAACCTGCGTGTCGCGGCCACGTTGCGCGACGGCTCCATGGTCTCGCTGCCAGTGCCATGGGCCGGCGCCGCCGACGTGGGCGACTTCGAGAAGCAACTGTCCCAGCTGCGCGCGCTGCATCGCCGTTACAGTCGCAGCACCCTGGGGTCATAACTCCCAGCACTCAGGCCAGGCCCGCAAAGCGCAACTACGAAACGGACAAGAGCTCACGTTCCGCACTCTCAGGGGTTAACTGGTACTTCCAGCAAGATCGCCGTCTAATTGGGCAGTCCGCTAGCCTGAAGCTCCGAGCGTGAAAGTCTGATTTGGTTGATTATGCGGCATCTTGGAGAAGTGTCATTCCTCATGGCTGTCCACCAGGAAGACTGCAGGTCATCCAGT # Right flank : TTGGCTGCGCGAGGTTGTTGGTTGCCGCACTACCGCCGCGAACGTGCGCGCAGCTGTACGGTGATCAGCGAGTCCGCTTCGGTGACATCCGGGGCTCTGGAGTCTTGGAGATACTCCAGGCGTCGTTCGAGCGCAGTTGCGTTGGCGGAGTTGTCGATGGTGGCGACGCCGTTGACGGTGACCTTCAGCGGCTCGGCGATCAGTGTGGCGATGCGTTCACGCAGAACCTCATCAGCAACGGCGCGTGCTGAGTGGAGCCGGTCGTATCGAGCTGCCAGGTCGTCGGTGTCGGTGTCGGGCCCCAGCTGGGCGAGGAGCCAATGCAGGATGTCGCTATTCACAAGGTTCCTGGTGATCGAAGAAGCGGGGAGGAGCGACTGCTCCTCCCCTTAAATACGGTTAAGTACCGGCTGGCTTCGCCTTACGAACGCCCTTTGGTGCGGGCAACTTGCTGTCCTGCCAGCAGCGAGGGTTGGTGATCTGATCGGCAATAGCCGGGT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGTGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1276992-1279157 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDY01000017.1 Streptomyces violascens strain NBRC 12920 sequence17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1276992 29 100.0 32 ............................. GCCGCCTACTCGACCGCGGGCCTGGACTTCGT 1277053 29 100.0 32 ............................. TCCTGCGCGGTGGTCGTCAGCTGGAACGTGTC 1277114 29 100.0 32 ............................. TGCTCGGCGCCCTTGAGGCGGTGGGCGAGCAG 1277175 29 100.0 32 ............................. GCTGCGGGACCAACCCGAGGAAGCCGAGCAGG 1277236 29 100.0 31 ............................. GCCCCCCTACATCGACATCAGCGACGACGGC 1277296 29 100.0 32 ............................. GACGTCACGGCGCCAGCAAGACCCACCAGGAC 1277357 29 100.0 32 ............................. GCGGCCGTGTTTGGGGGCTGGGGGCCGGGTCC 1277418 29 100.0 32 ............................. GCGCCGAGACGCTCCGCACCACCGGGCTCGCT 1277479 29 100.0 32 ............................. TCCCAGGACGGCCGCGGGTAAATTAGTGAGTT 1277540 29 100.0 33 ............................. GGGACGATCTCCGTGTTGTGGCCGACGGCCACC 1277602 29 100.0 32 ............................. GCCCGGATGACTCTGAAGAAGCGCAGTTCGGT 1277663 29 100.0 32 ............................. CGACCACCCCGCACGCTGCCCTGACGATTCCC 1277724 29 100.0 32 ............................. GACAGGCCGCGCGTTGAGCTGCCCCCGGCGTT 1277785 29 96.6 33 ........................A.... CAGCACATCGGCGGTCGCGCCGGTTGCGTCCCA 1277847 29 100.0 32 ............................. ACCACCCCGGGCGTACGGCCGGCCGACACGAT 1277908 29 100.0 32 ............................. CACGGTGGCGACGCTTACGCCTAGCCGTTCGG 1277969 29 100.0 32 ............................. ACGAGCCCGACTGACGGCGATCGATGCACCGC 1278030 29 96.6 32 ................T............ GAACGCGCACGCCGCGCCCGAGCGGTCATCCG 1278091 29 96.6 32 ........................A.... GGGACGACCCAGCCGAGGATATCCTCGGCGAA 1278152 29 93.1 32 ..A.................A........ CTCGGTGGCGTGGGCGTCCTGGCTGTGCTGTC 1278213 28 93.1 32 ...-..T...................... ATGATCGTGATGGGCGACACCGGACGCGGCAA 1278273 29 93.1 32 .....C.....A................. ACGGCGTTCTCAAGTTCTTGCGTTGCTGGCGG 1278334 29 100.0 32 ............................. GTCATCTGGTGAACGGCATATGTGTTCTGTCC 1278395 29 100.0 32 ............................. GATCCTGAAGAGGGCACGAACAAGCGGCTGTT C [1278398] 1278457 29 93.1 32 ..............T.........C.... AGCTCGCACACCCGCGTCCGGAAGATCGTGGC 1278518 29 96.6 32 ........................A.... CGGTCCAGAACGGTGGTCGCGCGGCGCCAGGT 1278579 29 100.0 32 ............................. TTGCGCCAGAACTTCACCGACTTCTTCGTCAA 1278640 29 96.6 32 ..........T.................. GGTCGTTCCCTCCTGGCTGGGTGCCGGTCAGC 1278701 29 100.0 32 ............................. GCTGATGGCTGGCGCCTGGACGTCGCGGGGTG 1278762 29 100.0 32 ............................. CACACCCGTCTCCTCGGCCCAGACCCCCGGAT 1278823 29 100.0 33 ............................. GGGACGATCTCCGTGTTGTGGCCGACGGCCACC 1278885 29 96.6 32 .....................C....... GGGGGGCGGCGCGCGGTGTTCGACGCCGGGTG 1278946 29 96.6 32 ....................T........ AACAACTTCCGCAGCCGGTACGTCCGGCTCCT 1279007 29 100.0 32 ............................. GCCCAGGCGGAGTGGGCGAGGAACGTGACAGC 1279068 29 100.0 32 ............................. TCTCCGTCCGGGAGGCCAACGTGGCTGATCAG 1279129 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.5 32 CTGCTTCCCGCGCACGCGGGGTTGGTCCC # Left flank : TCGGACCGGGACGAACACGTGCCCGCCGGCGTCAACCACGCCTCCCTCACCGAGGGCCTCTGGTGACCGTCATCGTTCTCACCAACTGTCCAACGGGACTGCGAGGCCTCCTCACCCGCTGGCTCCTGGAAATCTCGCCCGGCGTCTTCATCGGCAGTCCATCAGCCCGCATCCGCGATGTCCTATGGGAAGAAGTCCGCCAGTACGCCAACCAAGGCAGGGCTCTCCTCGTCCATACGACCAACACCGAACAAGGCTTCACCTTCCGCACTCACGAACACGCCTGGAACCCCGTCAACCACGAAGGCCTCACCCTCATCCAACGCCCCGCCACCCCGCCCGCGCTCCCCTCAGCCACCCCGAACAAGGGCTGGAGCAGCGCATCCAAACGACGCAGATTCGGGAATCGCTAGCGACCGTCAGGTATGACCGATATGCGAAAATCTAAGAAAGTGCCGCATTTCTTCGCTCCCCGCCAACAAAATCGCAGGTCGCGGAGT # Right flank : CAGGTCGTAGGGGTCTGGTACCGCGAGTTTGTCGCTGCCATCGGCGGGTCGGCCTCCGTGGATGCCAGCTCCTGGGCCGACACGCGCATCGCCCGCGGACGCGTCACGTTCTGGGAGACTCCGGACGGCACCCCGGTCTCAATGGCAGGTGTGACCCCGATGGTCGCAGGCCAGATCCGTGTCGCCCCCGTTTTAGAACCGCTAACAAAATGGGATGGCGGCCGCACCTTTGGCGGGGAGACGATCTCTCTGTACTCGCCGATGAAGGGGCATCCATGGCCGACATCGCACCGAGGGGGCTTCTCTCCCTTGCCGATGACGAGGGGAACAGCGTCACCGTCAACGTTCTGGGGCGCGGCCCCGGATGGGCTGCCGGACTCGATGCCGAGATCGTCGTCAGGACACCCTTCGTGTCCGGCCGCATCGACTTGGTGCTGTCAGTCTCGAAGCTGGAAAGCTGGGGCGACGCGCTGAACAGGCTCGACGCTGGCGAGGACGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTTCCCGCGCACGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //