Array 1 34045-34792 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXTM01000127.1 Pseudomonas aeruginosa strain MRSN6220 MRSN6220_contig00127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34045 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 34105 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 34165 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 34225 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 34285 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 34345 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 34405 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 34465 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 34525 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 34585 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 34645 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 34705 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 34765 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45205-43317 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXTM01000127.1 Pseudomonas aeruginosa strain MRSN6220 MRSN6220_contig00127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45204 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 45144 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 45084 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 45024 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 44964 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 44904 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 44844 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 44784 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 44724 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 44664 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 44604 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 44544 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 44484 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 44424 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 44364 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 44304 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 44244 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 44184 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 44124 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 44064 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 44004 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 43944 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 43884 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 43824 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 43764 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 43704 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 43644 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 43584 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 43524 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 43464 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 43404 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 43344 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //