Array 1 57694-56854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH804733.1 Enterococcus faecium TX1337RF Scfld433, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 57693 36 100.0 30 .................................... AACAAAATAGACCAGAAAAATTAGCTGATT 57627 36 100.0 30 .................................... AACTTTTCCATCTCTACCACCCTCTGGGAA 57561 36 100.0 30 .................................... CTATTGGTAATCTTATCTCCTTAGCTCAGT 57495 36 100.0 30 .................................... ATGCCTCGAGTGCTGTCGTGTGTGTGCTGT 57429 36 100.0 30 .................................... TTTAATAGTTAACGGAAATCACGATCGCGG 57363 36 100.0 30 .................................... TTTCGGTGCTGATAATCTTACCGTTAATTG 57297 36 100.0 29 .................................... TTGATTTGTGTCCTCGATTTGCACTTTTA 57232 36 100.0 30 .................................... CTTTTCCTAATAATTTACAATCATCAATAT 57166 36 88.9 41 ................................NNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 57089 36 91.7 30 NNN................................. CGACCAGCTGTATCTAACGAGCGGTCGTTT 57023 36 100.0 29 .................................... TTGATTTGTGTCCTCGATTTGCACTTTTA 56958 36 100.0 30 .................................... AAAGGAGCAATTGAAAAAGGAAACGGCGCG 56892 36 91.7 0 .........................A....T....A | G,CA [56857,56862] ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 97.9 31 GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC # Left flank : GAGCTATGCTGATTTGAATGCTTCCAAAACTTTACCGATTGCCAACACTTCTAATCCAA # Right flank : ACAGCCTTGCACTTATCGAAAGAGGATTAGTGTCAAGGGTGTTTTTCATATGAGTGGACGGAATTATCTGTTTTCTTTTACAATTGATAATAGATACTTTGCTGTATAGTCAGTAGCTGATATAAAAGTATCGGCTCTTAAATGGAAAAAAGATAGGTGGCGACGCAATGTTTAACACACAATTGATCGGTTATTTAGAATGGATCATTGCTATTTTAAATATTTGTTCTATCGGTATCTTAATTGCTGGGATCGTTCTTGTTCTATTCAAACTTTTTGATTGGTCTCATGTCAAGAAAAACTATGCAGAACGTAATGCTCGTAATGCAGATACAAGAAAACTGTTAGCAAGTTATATTTTGTTAAGCTTGGAAGTACTAGTCGTTGCTGATATCATCGAGTCAGTTATCAAGCCGACTTGGACAGATATTTTGAAGCTTGCACTTATTATTATCATTCGAACAGTCATTTCTTATTTCTTGAATCAGGAAATAGAAGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 163-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH804738.1 Enterococcus faecium TX1337RF Scfld493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 162 36 100.0 30 .................................... GGACGTGCTACACGTTGTACCCCTTCTTTT 96 36 100.0 30 .................................... TCTTCTAGTTGTTTCTTTACTTTGGTTTTT 30 30 83.3 0 ..............................------ | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 94.4 30 GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC # Left flank : GCCAGCTCAATGAAAAAGTAGAAGTGAAATCAATGATTGATAAACTGACAGCGACAATCAGTGAGCTGATCGGGTACGAGTTGTTGGATCACGAACTCGATTTAGAAGGAGACGAGATCACGGTCTTGGAATTATTCAAAGCATTGGGTATCAAGATCGAGACAAGAAGTGATACTATTTTTGAGAAATTACTTGAGTTGCTTCAGGTTTATAAATACTTGTCTAAGAAAAAATTATTGGTTTTGATCAATGTGTGTTCCTATCTCACGGAAGAAGAAATAAGCGAAGTGCAAAATTATATTTCGTTATATCATATGGAAGTGCTATTTGTAGAGCCGCGTTCGATCAAAGGGATAAAACAATTTGTCTTGGATAAAGACTATTTCTTGAACTTGGAAAACATGGTATAATGGTAAAAAAGAGAAGCGTTCAAAGCTGAAGTTTTGCTATGAACGAGTAGCGTGATTATGAAACATTGACGGAAAAATTTTTTCTGCGAG # Right flank : C # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //