Array 1 49630-48563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJA01000049.1 Streptomyces sp. NRRL S-384 contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49629 29 96.6 32 ............................T CCGGCGAGGCGTGCAAGAGCCCGCAAGGGTGG 49568 29 100.0 32 ............................. AGGGCGGCCGGGCTCTCGGTGCCGGTGGAGAC 49507 29 100.0 32 ............................. GCCCCGAAGGTGGTGGCGTTCCAGCCCGCCAG 49446 29 100.0 32 ............................. AGGGCGAACCGGGTGCGCTCGATCTCGCGCTG 49385 29 100.0 32 ............................. GGGCCGACGACCGGAGCGCCGTTGACGTCGAT 49324 29 96.6 32 .........A................... GTTGACGGAGCCGCGGACCGCTCCGGCGACGG 49263 29 100.0 33 ............................. GTCACCGTTCCGCAGTAGCCAACTCCGTTCGCA 49201 29 100.0 32 ............................. CAGAACCGGCGCGACCTCGAGGGCGGGTTGCG 49140 29 100.0 33 ............................. CCCGAGCTCAACCCGCTGAACCGCCGACCCGAG 49078 29 100.0 32 ............................. GCCACCTCCACCCTCTCGTTCCGCTCCGCGGA 49017 29 100.0 32 ............................. ACCATGTGGGTGCCGGAATGCTGGGACTTGGA 48956 29 96.6 32 .....................G....... ACGCAAGGCGCTGAAAGTCGTACGGATGATCC 48895 29 100.0 32 ............................. CACATCCGATCAACGGAAGGAGAGGCAGGCCA 48834 29 100.0 32 ............................. GGCGGCTGCCGAGACCGCGGATCTCCTCCGGG 48773 29 100.0 32 ............................. TCGCTCTTGCCGGCGGGCCAGGCGAGCAGCAC 48712 28 96.6 32 ........-.................... GCGACCAGGCCGCTGCTGACCGGAGAGGTGAG 48652 29 100.0 32 ............................. TACAAGGGCACGAACTCGATCCTCGGCGACGG 48591 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.1 32 CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : TGGTCCTGGGACGAACTCGGTCGAGGATCTTCTCGACACCTGCTCCCCGCACTCACGGGGATGGTCCCTACGCCCCGGGGGAGACCTCGACCGGGCACGACTGCTCCCCGACCGCGCGGGGATGGTCCCAGGGGCGGGCTCTCGAGCGCGTAGTCGAGCTGCTTGGTCAGGCCGCCGTACGGGCGGCTTTGGGATGGTTCTCTGTGCCCGTGTCCGTCCCGGGACTGGCGGCTGTGGTGTCGAAGGGCCGTGGGAACATGCGCCCACACCACCGCGCTCCTTGATACTTCCACAGCACCACCCACAACGACCGACCACCGCCATGGCACACGTCGGCCTCCCGGTACACAACCAGGCAACTACGAAGCCTCGCCTCGTCCACGTACCGAAGGACTACCAAACCGCTCAGGAAAGGAAGTGGCTCGATGTCGCTAATGTCCGAATCCTTGAAGCTGGCGGATTTCCGCCCCACCGACACATAGCACCGCAGGTCAACAAGG # Right flank : GTGAGCATTCATCATGCGCTCCCCCTCACACGGACCACACGGACCGGTCACCCTGGCCGGTCAGGTACTGACGCAGGTGGTGGTACAGCCGAAGGCCGAAGACCCGCTGCGCCTCGACAGGCCCGGCCATCAGTTCGAAGGACTCGAACAGGGATGTGTCCTGGTAGAGCTTCCACTCCCCCCACGCCTGCTGCCGCAGCGAGCGGACCTCCTCGTCGGTGACGTCCTGGTCCAGCTCGATTACGTCCTGCCTGGCACGCTCGGTACGCTCGGCGGCCCTCACCTGGGCCAGAGCCTGGGCGAACTCCTCGTGCGGCTCGGCCAGGTCCACCGAGACCGGCAACCCGCTCTCGTACGCGGCCTGTTCGGCCTCCGCCCGCAGCGCGTGGGCGATCAGCCCTTGCGGGCGCTCTGGGCGCCACAGCAGCCCGGCGCCGTACTGGGCCGCGATCTCACCCAGCCACAGCACCACCCGCTGCTCGTCCCAGCCTCGTCCGACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51311-50001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJA01000049.1 Streptomyces sp. NRRL S-384 contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51310 29 100.0 32 ............................. GCGACGGCTCAAGTCAGCGCCGCACTGCTCGG 51249 29 100.0 32 ............................. ATCGCGGTGGTGAGGTGGTGGGTGATGCTGGC 51188 29 100.0 32 ............................. GACGTCAGCCCGACCGACGAGATTTTCATCTG 51127 29 100.0 32 ............................. CAGGCGATCAACCGCCGCCGCAGCCCCCGGGC 51066 29 100.0 32 ............................. GACATCTGCGCCCGCTTGCCCAAGGGCGCCGA 51005 29 100.0 32 ............................. TCGTCCCGCTCCCAGCCGGTCACGTCCAACAA 50944 29 100.0 32 ............................. TTCGGCGGGGACGGCGTGATCGAGAGCGGCGA 50883 29 100.0 32 ............................. CCAACTCGAATAACCCCCCGTTCTGCCTGGGG 50822 29 100.0 32 ............................. GACCAGCCCGGCCGCCGCCTCGCCGACGTCCA 50761 29 100.0 32 ............................. ATCCGCGAGAACGGCATCCCCACCGTCCTCAA 50700 29 96.6 32 .......................A..... TCGATGCTGCTCGCGCCTATGGCCCCCGAGAC 50639 29 100.0 32 ............................. TACAAGCCGGCGATCCTGTCGCAGGACCTGGG 50578 29 100.0 32 ............................. TTCGGGCACCGCTTCTGAGTCTTGAGGACGGC 50517 29 100.0 32 ............................. TTCCGTCCGTCGCGCAGGTGCGGCGGCTGAGT 50456 29 100.0 32 ............................. CCCGTTGTCGAGCCCGTTCACCGCCTCCGCCG 50395 29 100.0 32 ............................. GCCTCGGTGCGGAACTGGCGGCCGCGGGCCTG 50334 29 100.0 32 ............................. GAGGCGCTGCCCGCAGTCGCCTCCTTCGCCCG 50273 29 100.0 32 ............................. CTCCGGGCCTACCTGGCCGACCACGTCCAGAC 50212 29 100.0 31 ............................. CGTGCAAGGGCCAGGGCCTGCCGCCCAACGA C [50187] 50151 29 96.6 32 ............................T GGGACGAACTCGGTCGAGGATCTTCTCGACAC 50090 29 89.7 32 ...........A.T.A............. TACGCCCCGGGGGAGACCTCGACCGGGCACGA 50029 29 89.7 0 ..........AC.G............... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCATCGCACACGGGCAGGTCCGCATCCCCGCACCCGCGGGGATGGTTCCGCCGAGCTCCAAGTACAGGCTGCTGCCACCAATTGCCCCCGTCCGTGAGGACGGTCCCTCCTTCGGGCCCCACGCAACCGCCTCACCGCCCGTTCCTCTCACCTACGGGGATGGGGATCTGTAGGCACTGCTGGTCACCCCCACCCTTTCGCCGCTCCCCGCGCCCGGGCGGAGAGCCTGCTGTTGCCGTGTCAGAGGAGCGTGGGAGCATGCGCCCGCACCACCGCGCTCTTTGACACCTCCACAGCAGCACCGACAACAACCAACTACCGCCGTGGCACACGCCCGCAAGGCGCAGAACCAGGTGGTCGTGAAGTCCGACCCCGCCCACACCCTGAAGACCGCCAACCCGCCAGCAGGAAAGGAAAGTGACGCCATGTCGCCAATGTCCGAATCCCTGAAGATGGCGAATTCCCGAGCCACTGACTCATAACACCGCAGGTCAACAAGA # Right flank : AGGGGCGGGCTCTCGAGCGCGTAGTCGAGCTGCTTGGTCAGGCCGCCGTACGGGCGGCTTTGGGATGGTTCTCTGTGCCCGTGTCCGTCCCGGGACTGGCGGCTGTGGTGTCGAAGGGCCGTGGGAACATGCGCCCACACCACCGCGCTCCTTGATACTTCCACAGCACCACCCACAACGACCGACCACCGCCATGGCACACGTCGGCCTCCCGGTACACAACCAGGCAACTACGAAGCCTCGCCTCGTCCACGTACCGAAGGACTACCAAACCGCTCAGGAAAGGAAGTGGCTCGATGTCGCTAATGTCCGAATCCTTGAAGCTGGCGGATTTCCGCCCCACCGACACATAGCACCGCAGGTCAACAAGGCTGCTCCCCGCGCCTGCGGGGATGGTCCTCCGGCGAGGCGTGCAAGAGCCCGCAAGGGTGGCTGCTCCCCGCGCCTGCGGGGATGGTCCCAGGGCGGCCGGGCTCTCGGTGCCGGTGGAGACCTGCTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 53222-52520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJA01000049.1 Streptomyces sp. NRRL S-384 contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 53221 29 79.3 34 T..T.......CA.T..........T... ACTTTTGAAGCGCAAGCACGCCTTCAGGCGGACG 53158 29 86.2 32 T........................TTG. GCGGAGGACGACAACGGTGCGGCCGGCCCGCT 53097 29 93.1 31 .........................T..T CGAGCCGAATCGGCGTCTTGTCCTCGGCGAC 53037 29 96.6 35 .........................T... GCGGCCACGGCCACCGCGACGGCCAGCAGCAGCAG 52973 29 93.1 32 ...........A.............T... TACCGCCTGACCGAGTCCTACGAGCGCGGCAA 52912 29 100.0 32 ............................. GAAGCGAAGGACTGGCGTGGAACGCCGATCGT 52851 29 100.0 42 ............................. TCGACCGACCGAAGCCGACCGATCAGGGCCTCGCGCGGGGGA 52780 29 96.6 32 .............A............... CTCGTGCGCGGGCTGCCGGTCGTCCTCGACGA 52719 29 93.1 32 ................T........T... AAACTGCTGGCCGCGCTGGACGCCGACCAGGA 52658 29 93.1 82 ..A....G..................... CCCGATGACCGCGCTCCGCGCGAGGAGGAAGGCCTGCTCCCCGCGCGGTCCCTGGCGCGCTGCTGGCCGGAACCCTGCTGCT 52547 28 72.4 0 ...A.....A......T...T-...TT.T | ========== ====== ====== ====== ============================= ================================================================================== ================== 11 29 91.2 38 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : GGGGATGGTCCCATCCAGGATGTCTACCCGACGCACGCGGCGGCCTGCTCCCTTCGTCCGTGGGATTGGTCCTGAAAGAGAAACCCCTCCGAACATTTTTGATGGCTGTCCCATCCGTGAGGGGCGGCCAGCGGATGTTCCGATCAAGGACAGCCAAAGATCCGAGAGTCTTCTACGCCCCGTACCGTCCCCTGGCGATTACTCCTACGGCGGCTAGACCTGCCACTACGGCGGCACCCGCCACGCGCAGCCATTTGGGCCTGTTCCGTAGGACTACGGTCAGGCCACCGATCTTGAGCGACAGGTAGGGACTTTCACGCTGCATGCTCGCATCGAATCACTGGGGAACACTTTAGTTCGGAAGCACGCAACGCGACATGCCCTCAGGGTCAAGCGTTCGCAGCAACGAGTCGCCGAAAGAAAGACGCTGATCTCCCGCGTTGCAGATAGCAAACCGCCTTGCTACCTGCGACGATGAACTCTCTGGGTACCAATGCACG # Right flank : GCCAGTAGCTGGGATTTTGGCCGCCGCGTGTGTGGTGGGGGTGTTCAGCCAATTCGGCCGATGTGGATCACGATGATGGTGACGGTGGCCTCGGTGATCTCATACATGACGCGGTAGCGGCCGACGTGCATCCGGCGCAGGTCGGCAGAGCCGTACTCCGCGCTGCCCGGCGGGCGCGGGGAGTGTGCGAGCAGGTCGACAGCGTCCATGAGCTGCCGCAGGCCTTCCAGGTCGTCCTTGAGGAACCGGGCGGCGGCATTGATGGCCAGCTCGTCCCAGACGATCGTGTAGCTCAAGCGGTGGGCCCCAGGCCGAGCCGGGTGCGGACCTGCTCGTGCACTACGCCGGTGGTCTCGCCGGCTGCCTGCCTTACCCGGTACTGGGCCAGGGCGAGGGCGTCCTCGAGGTCGGCCAGCTCCTGCGGGTTGATTAGGACTGCGGCGGGCTGGCCGTGGTCGGTGATGGTGATGCGCTCACGGGCGTGGGAGGCACGCCGGACC # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.37, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 54486-53649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJA01000049.1 Streptomyces sp. NRRL S-384 contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 54485 29 86.2 32 T.C............A.........C... CCGCTCGCCCTCGCGGTACTCAAGTCCAAGCG 54424 29 100.0 39 ............................. TCCCGCCTTGGCCAACGCCGTTGGGGCTGGTGCTACTCC 54356 28 86.2 32 .C..G...-...........A........ GCGGGCCTGGGCGACGGCGATCCAGCCCGTCA 54296 29 96.6 32 .......A..................... ACCGGTCGCGTCACTGCCGTTGTCGGAGACAG 54235 29 96.6 32 ...................A......... ACCGCGACGCTGTCCGCCGGCACCAGCACGCT 54174 29 100.0 32 ............................. GACGGTGTGTTGCCGGAACTGCGCCTCGGTGC 54113 29 100.0 32 ............................. CGCGAGGTCGAGAAGCGCGAGGACAAGAAGCC 54052 29 89.7 32 ...........C.G..........A.... GTTCCACCTCGGCGGGACGCGGACCCGGCGTT 53991 29 93.1 32 ...........C.G............... ACGGTGGTGTGGGTGGTGATCCACGGGCCGGT 53930 29 89.7 33 ...........C.G..........A.... CGCGGACCGGTTGTGGTTCGGGCAGTGAGCGCC GG [53903] 53866 29 86.2 32 ..A.C.........T..........C... GGGCTGATGCTGTCCGGCATCCAGTCGAGCAA 53805 29 93.1 38 .......T.................C... AACGGGCGCCGCACGGTGGAGTTCACGCACGCGGGCCA 53738 29 93.1 32 T...G........................ ATCCAGGATGTCTACCCGACGCACGCGGCGGC 53677 29 75.9 0 ........TT..T...T...AT......T | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 91.9 33 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTGCATCGGATCGTGGACTCCGCGCTGCAGAGCCCGTTCCAGCACCTTCTGGTCCCGGTGCTGTGCCTCGTGGAAGCGGAAGTCGGGGACGAGGGCGCCGCGCAAGCGCTCCTGGCGCTGCCGGCCCTCGAGTTCGAGCCTCTGGACGCGACTTCCGCCGTGGTGGTGGCGACCATGGTCCGCGACGGGTACGGAGGCCAGGGCGTGGCCCACGCCATCGCGACGAGCCTGCCCACCCCGGCACGTCCGCTGCAGCACCTGATCCTGACAGCCCGAGCGGAGCTGTATCCGCCCGGAATCGCCACCGTCGACATCGACGACCCCCGGCTGGAACCGTAGACCCCGAAAACCCAACGCCTGCCGGAGACGAACTCCAGCAGGGCCGTGATCACACCTTCTGACCGAGGAAACTACGCCCGACTCCACCGTGCAGGGCCACGCCCCGACGCGCGAGCCAGGACCGGTCGGACCCGAACACCCAGCTGAGACCATGCCAGCAG # Right flank : GAAAGAGAAACCCCTCCGAACATTTTTGATGGCTGTCCCATCCGTGAGGGGCGGCCAGCGGATGTTCCGATCAAGGACAGCCAAAGATCCGAGAGTCTTCTACGCCCCGTACCGTCCCCTGGCGATTACTCCTACGGCGGCTAGACCTGCCACTACGGCGGCACCCGCCACGCGCAGCCATTTGGGCCTGTTCCGTAGGACTACGGTCAGGCCACCGATCTTGAGCGACAGGTAGGGACTTTCACGCTGCATGCTCGCATCGAATCACTGGGGAACACTTTAGTTCGGAAGCACGCAACGCGACATGCCCTCAGGGTCAAGCGTTCGCAGCAACGAGTCGCCGAAAGAAAGACGCTGATCTCCCGCGTTGCAGATAGCAAACCGCCTTGCTACCTGCGACGATGAACTCTCTGGGTACCAATGCACGTTGTTCCCCGCCACTGCGGGGATGGTCCCACTTTTGAAGCGCAAGCACGCCTTCAGGCGGACGTTGCTCCCCG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 58803-56883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJA01000049.1 Streptomyces sp. NRRL S-384 contig49.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58802 29 100.0 32 ............................. TTTCACTCACTGACAACCTGCCAGGGGTTTTT 58741 29 100.0 32 ............................. CCCCGGGCAGTGCTCCCCGCGCGAGTGGGGAT 58680 29 100.0 32 ............................. AGCGCGACGCAGCCGAACTACTCGGCGGTGCT 58619 29 100.0 32 ............................. GAGGGCCGCGGCGGCGACGCCCTGACTCCGTC 58558 29 100.0 32 ............................. TGGGAGATCCCCTCGGGCATCGTCGAGGACGG 58497 29 100.0 32 ............................. GCGGCCGGGAGCACGGTCAAGGTCTGCTTCCG 58436 29 100.0 32 ............................. TACTGGCAGCCGTACTACCGGAAGCGGCGCCG 58375 29 100.0 32 ............................. AAGACGCGAGAGGTCTTCCCGCCGTCGCGCTA 58314 29 100.0 32 ............................. GATGCGCCGAGATCGTCGCCGAGGTCCGGGCC 58253 29 96.6 32 ........................C.... GAGAGATCGAGATGGTTGCCGAAGGTATGGAG 58192 29 100.0 32 ............................. CCTAACAAGGGGCGTACGGCCCCCGCCCCCGC 58131 29 100.0 32 ............................. AGGCTGCTGTCGTTGACGAGTGTGGTGGAGTT 58070 29 100.0 32 ............................. GTGTCGGGTTTCACGGCGTCACGGCCCTGGTG 58009 29 100.0 32 ............................. GGCGTCTCGCCGAGCTCGGCGGGGAGTGGCCG 57948 29 100.0 32 ............................. GCGGAGTGGCCAAGAATCGCGGCGCCGAGCAG 57887 29 100.0 32 ............................. TCCTCGGCGGTGGCCACCCGGACGTGGGTCCG 57826 29 100.0 32 ............................. CGGCGCCGCCCCGTCCCGACGGGCCGCCGCGC 57765 29 100.0 32 ............................. GTGGCCATGAAGAGCGCGATCAGGTCGGCGTT 57704 29 93.1 32 G..................A......... GCCGCCGTTGAAGGGCCTAGGAGCGTCGGTCG 57643 29 100.0 32 ............................. GCGGCCGCCGACGCCGCGCACTCCCTCGGCCT 57582 29 100.0 32 ............................. AGGTACCAGCCGGGGACGGTCGGCGTGTACCT 57521 29 96.6 32 ............................T ACGGATGGGTGCAGATCAGCGAGGCGTACGAC 57460 29 100.0 32 ............................. GACAAGCTCCGCGCCCTCGGCATCGAGCCCAC 57399 29 100.0 32 ............................. TTGTCCATGCCGCTGGACTTGTCTGCCACCCG 57338 29 100.0 32 ............................. TCGGCAACGAGCGCCGCGTTCCGAGCCAGGCC 57277 29 100.0 32 ............................. CATGTGGAATCCGGCGACAGCGCGCCGTACCG 57216 29 93.1 32 ...........T................G TACGAGCGGGCCGCGGCCGCCGGCCTCACCGA 57155 29 100.0 32 ............................. CGCGTACGCATGATCCGCTCGGAGGGGCTGGC 57094 29 100.0 32 ............................. TACTCCGTGCAGTCGACCGCCCGTGACGTCCT 57033 29 100.0 32 ............................. GTCAGCCCCTTGGCCAGGCGCCCGTACTGTTC 56972 29 96.6 32 .........................C... CGGCGCGCCGTCGAGCAAGTCGCCGCCTCCGA 56911 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.1 32 CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : TACGGACAACCGGTGAAACGCCGCTACCACGTCCACGCCCCACAACAAAACCATCCCGCTCCAAGACCGCGCCTCAGACAGCTCGCCCTCGGAGCTGCGAGAAAGCCACACAGCCGACCTCGAGGGTCCTTCCTGGTCACACTGTCGCCGTCAGCGCAGAGGACGGACACTCCTGGGTTCACACCCTTCAAATCCTTCAGACACCCGGGCCAATGGCCGAGATCCGCGCCCGGTGTCGTACCACTGTGGGACCATCCAGCCTCGCTCTACAGACCCTTGACACCTCCACAACACCACCGAACAACAGATGGCCGCCGCCACGGCACAAGCCCCGGCCATCCGCTGCAGAACCAAGCGATCGCGAAGCTCCACCCCGCCTACGCCTTGAAGACTGCCGACTCTTCCAAAGGAAGGAGAGTGACACTATGTCCCCAATGTCCAAATCCCGGAAAGTAGCGAATTTCCACACCTCCAACGGATAACACCGCAGGTCAAAAAGA # Right flank : TGGCCCGGCTGCCGGTCGAGCGTAGCGCTCCTCTTCTAGAGAGGATCTATAGATCGGCGTAGGGTGGGGGCCATGACCCTTACCACCATCCAGGTCGACGTGGAGGTCCGCGACCGGCTGAAGACCATCGCCGACGCTTCCCACACCTCCATCAAGCAGGTCGTCGCCCGCCTCGCCGCCCAGACCCTCACCCCCGCCGAGCTCGCCGCGCGCCAGGCCCGCGGCCGCGCCGCGATGGCCGCAACCGGCGTGGTGATCGGCGACGACCCCCACGACCCCGACCGCCAGGCCGCCGAAGCCTTCTGGGCCGGCCTGGAAGCCCCTGCGTCTTGACCCCTGGCACCGTCGTCCTGGACCACACCGCGCTCGCCGCACTCGCCTCCGGCAACCGCTTCCTGTCCTACATCTACGACACCACCCACCAGTCCCCCGAGCGCCGCATCCTGGTGCCCACCAGCTGCCTCGCCCAGACCGAACGCGACCGCTCCGGCTCCGCCGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 68746-71156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOJA01000049.1 Streptomyces sp. NRRL S-384 contig49.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 68746 29 100.0 32 ............................. TGGCTGTCCCGGCAGCACTGCTACTACGTCGC 68807 29 100.0 32 ............................. ACCTGGTCGCCGTGGGCGAGCCTGGACCCGGC 68868 29 100.0 32 ............................. GTCGCCTGATCAACCCCCGCCGGGTGCCCGCC 68929 29 100.0 31 ............................. CCCAGCACTGGCTCGCGGGCACCCGGCAGGA 68989 29 100.0 32 ............................. GCGTTCGCCAGGTCCTGCATCTTCATGTCGCC 69050 29 100.0 32 ............................. GTCGACGGGCGCACCTGGGCGAAGTACGGGCT 69111 29 100.0 32 ............................. GGGCCGCCGACGATCTTGTTGCGCTCCTCGTT 69172 29 100.0 32 ............................. AGCAAGTCACTCGCCATACGGCTCCGCCAGCT 69233 29 100.0 32 ............................. GGCGGCCGGTGCGCGGCGGTGGCCTTGAGGGC 69294 29 100.0 32 ............................. GAGCCGTCCTCCTCCTCGCCCGGCTCGTCGGA 69355 29 100.0 32 ............................. ATCACCACCTTGCTGTCGAACAGCCAGAAGTC 69416 29 100.0 32 ............................. CAGATTCACACCATGCACATGGTGGGAAAGGT 69477 29 100.0 32 ............................. ACGGCCGGGGCGAACATGCTCACCTCGCACCG 69538 29 100.0 32 ............................. ACCACCGAGAGCGCCGACTCCGGGCACCCGGA 69599 29 100.0 32 ............................. AACCGCAACGGCGTGTACAGCCCGCGGAACCC 69660 29 100.0 32 ............................. CAGCAGGTACGCGACGCCGGCATGTACGCCGT 69721 29 100.0 32 ............................. GTCTCCGGGGCCGTGGAGGAGGTAGTACTCGA 69782 29 96.6 33 .G........................... TCCCCGGCGACCTGGCCGAGGATCGACTCGGCC 69844 29 100.0 32 ............................. GACGAGTCCGAGGACTGGCGGATGTTCCTCGA 69905 29 100.0 32 ............................. GACCGGGACTTGACCATCATCTCGGTGTGGGC 69966 29 100.0 32 ............................. AGCATCACCCGCTCGTACCGGTCGGTGATGTG 70027 28 93.1 32 ....................-.......T CATCCCTCTACTCCTTGCGCTCGTGTCTACCT 70087 29 100.0 32 ............................. TCGTCCCCCGCGGCAGCCCCGGCCCACTCCAA 70148 29 100.0 32 ............................. TGGTTCAGCGCGTCTGCCGCGTCGCTTTCCCT 70209 29 100.0 32 ............................. CCCGTGCCCGGCACCGACACCCCCTCGAGCGT 70270 29 100.0 32 ............................. TCATGGAGGCCCTGGACGCTGAGCGCGACGCC 70331 29 100.0 35 ............................. GAGAACATCCTGGTGGGCCGGGGGTCGGTGTACGA 70395 29 100.0 32 ............................. TGGTCGGCCTGGCAAGGCAGTTCGGCGTGCGT 70456 29 100.0 32 ............................. GTCCGTCTCCAGATCGGCTACTCCCCCCGCCA 70517 29 100.0 32 ............................. GCGGCCCGGCACGGCTCGCACGTCTCGACCTT 70578 29 100.0 32 ............................. CGGCTCGGCCCACTGGCCTGGGCGCCGGCCGG 70639 29 100.0 32 ............................. CCGCCACGGAGCCCTCAGTGCCCCTCACGCCC 70700 29 100.0 32 ............................. TCCTGCGCGCCCACTCAGGGGCCGTGGCCTCC 70761 29 100.0 32 ............................. GCGCCGATGGTGTAGAGGACGATCGAGCGGAT 70822 29 100.0 32 ............................. TTGCCTGACGCGTCGAAGCTGTTGTCCCACAC 70883 29 100.0 32 ............................. CAGTTGCCGCCGTAGGTGCAGAGCCAGCGGAC 70944 29 100.0 32 ............................. GACATCCAGCGCGTCTCCAACGCGGTCTGGGG 71005 29 100.0 32 ............................. CTGCCCAGCGGGGTGCCGATGTGGACCAACGA 71066 29 82.8 32 .....................G.CAG..G TAGCCCCACGGACCGGGGGTGGCGGCGTTGCA 71127 29 75.9 0 G.C..........GA......G.A.G... | C [71149] ========== ====== ====== ====== ============================= =================================== ================== 40 29 98.7 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCACGGGCAACACGTGGCCGCGGGAGTCAACTACGGAGAGGGCAACTGGTGACCGTCCTCGTCCTCACCAACTGCCCCGTCGGCCTCCGGGGTCTGCTCACCCGCTGGCTCCTCGAGATCTCCGCCGGAGTGTTCATCGGCTCCCCAACCGCACGCGTACGGGACATCCTGTGGGCCGAAGTCCGACAACACGCGGGCCAGGGCCGGGCTCTCCTGATCCACACCTCGAACACGGAACAGGGCTTCACCTTCCACACCCACGACCACGCCTGGAAACCCGTCGACCACGAAGGCCTCACCCTCATCCACCGACCGAACACCACCGCGACAGCGGCATCCAACCCTGCGAAGCCAGGCTGGAGCACTGCTTCCAAACTGCGCCGCTTCGGAAAACGATGAAGCACTCTCGAAAGAGCCTGGGCCTTATGTCCTTTATGTCGGAATCGGCGAAGGTTGCAGTTTCGCGCCACACCGACAGGTAAACCCACAGGTCATCAAGA # Right flank : CGAGGACGCCGCCAGGGTCGCCCTCGGGCATGTCCCACCAGCGTCCCAGCCTCTGCCGCCGGTCGTCGGCGCGCATGCCTCCGGGTGATTGGGGCACACCAGTCGCATGAACCTCAAGGTGATCACGAGCCTCAAGCCCAGGGCGGCGAGTTCCCTGAAGCGCGTCGAGCAGGCCGTCGCTGAGCACGCCCGTACCCGCCGTCAGCTGGATGCGGCCCTTGCCGAGGCCGTGGCCGCCGGGGTGGGCGAGGAGCAGCTGCGCGAGCTGGGCCAGTGCGAGCCCGGCCACGGACGTCACGCCTCCAGTGAGGCGGACCTGCCATCTGCCCGGGCGATCTGACGAGCCCGGTGAGGGTGGGACGGACCTGGGACTGTCCCACCCCGTTTGCCCAGGTGACAGTGTTCCGCAGAGCCTGAGATAAGGCCGGGATAGCCCTCACTGGGCGTTTCGTCCCTGACCCCAGAACTCAGGGACGAAACGCCCAGTCAGATTCCGTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //