Array 1 1952400-1953790 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADIXQ010000001.1 Lacticaseibacillus paracasei subsp. tolerans strain MGB0543 contig1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1952400	    36	 100.0	    30	....................................	TTAATAAGAGAACTGGAGGAACTAAGACAT	
   1952466	    36	 100.0	    30	....................................	AAATATTCCATAACCTCGTCATGGTGGTCG	
   1952532	    36	 100.0	    30	....................................	ACAGCCTGCTAAGAACAAGCAAGCACATTA	
   1952598	    36	 100.0	    30	....................................	GGCAGTATCTTGCGGAAGACCCCGAACGTG	
   1952664	    36	 100.0	    30	....................................	TCGTGCTCGTGTTGCCGTATATGGTGACTG	
   1952730	    36	 100.0	    30	....................................	GGCTGTCTTGGGCTTCGATTCTGATAACTT	
   1952796	    36	 100.0	    30	....................................	TGTGCTAAACGCACTGACCATGCCCCGCTC	
   1952862	    36	 100.0	    30	....................................	CCATTTTTATTGATTTTGGCTCTTCACTCA	
   1952928	    36	 100.0	    30	....................................	CAGAAAAGGGAACGATCAAGATGTCACCAA	
   1952994	    36	 100.0	    30	....................................	AGATACCCGCAAGATACAACGAAGCCATTC	
   1953060	    36	 100.0	    30	....................................	CTTCCGTGCCTTTTCGCTTCCCGGCAATAC	
   1953126	    36	 100.0	    30	....................................	CCGCCTTGCCAGATGATCTGCCGGTGATTC	
   1953192	    36	  97.2	    30	........................G...........	TTGCCGTCAATACTGTTCGCCCACGCGGTG	
   1953258	    36	 100.0	    30	....................................	ATAAAAACAATGGCGATTATCAAACTTGAT	
   1953324	    36	 100.0	    30	....................................	TGATTGCCGAGATACTCCTGCATGTTCCTG	
   1953390	    36	 100.0	    30	....................................	AGATGGCCGTTGTAAATGACGACATCACAG	
   1953456	    36	  97.2	    30	........................G...........	CAGAATACTACATTGGCGAGCGTGAGGACG	
   1953522	    36	  97.2	    30	..........................A.........	ATTTGAGTAACCAGACTCAGATGTGCTTAT	
   1953588	    36	 100.0	    30	....................................	CCAAGGGCAGGTTTTCAACTGCCTTCTGGA	
   1953654	    36	  97.2	     0	...................C................	-                             	Deletion [1953690]
   1953690	    35	  75.0	    30	-CAAA.....AT....A.G.................	AGGAAATTCGAGTTCTTCCCGCAATTGATG	
   1953755	    36	  86.1	     0	C............................G..TTC.	|                             	
==========	======	======	======	====================================	==============================	==================
        22	    36	  97.7	    29	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG
# Right flank :  CAAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTACTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAA

# Questionable array : NO	 Score: 6.01
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-17] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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