Array 1 3392-3694 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAIRF010000003.1 Streptococcus pyogenes strain NS6989, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      3392	    36	  94.4	    30	....AC..............................	ACAAAACAAAGTAACCTTGATGGCTATTTT	
      3458	    36	 100.0	    30	....................................	CGCTGCTGGCTGCATGCTAATAACACGGCT	
      3524	    36	 100.0	    30	....................................	TGGTCTAACTGCGTCTGGTCTGTGAATGAT	
      3590	    36	 100.0	    30	....................................	GATGCCGTTGACATCACCAGTATCCCCTTT	
      3656	    36	  97.2	     0	................................C...	|                             	T,TT [3685,3689]
==========	======	======	======	====================================	==============================	==================
         5	    36	  98.3	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AAAATATTTAATGTATCAGTAGATGATTTTTTACCAAAGGACTGACAATATCTAATTTTAAATTTACAATATAATTAATGACATAGTAGCTTAGCTATGAGGGTTGAGAAATATGGTAGTAATCCATAAATTAAACAGACTGCAGTTTTTGCCAGTCTGTTTTTTTAGTCCATTAAACCAGACTAAAACAAAAAAGTCCTTTTTAAGGGACTTTTTACGAATAATAAGATAAGGAGGATTTACATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCACAGCAGACACAGTAGCGATCGTGCGTAAAAACGGATTGATATTTGATTATGTGTTGCCGCACGAGTCTGTGAGATCGTGTGAGATTGTGATCGAGGAGAGGGTGGCGGAGGTGATGGTGGAATTAGACAAATAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGGACAGGTAGTCCAATCTATTGATATAAAGCCTTTTTA
# Right flank :  CATTGCCGATGATAACTTGAGAAAGAGGGTTCATACCAGCAGTCGGATACCTTCCTATTTTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGTTAGTTGGAGAGATTTTGCGGTGGATTGAACGCTTAAGATTTACGTTTAAGCGATTCGAGATAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAGGCG

# Questionable array : NO	 Score: 5.97
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.16%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [3-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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