Array 1 187280-184319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCH010000008.1 Salmonella enterica strain F2-2 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187279 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 187218 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 187157 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 187096 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 187035 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 186974 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 186913 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 186852 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 186791 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 186730 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 186669 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 186608 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 186547 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 186486 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 186425 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 186364 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 186303 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 186242 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 186181 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 186120 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 186059 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 185998 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 185936 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 185875 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 185814 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 185753 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 185692 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 185631 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 185570 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 185509 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 185448 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 185387 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 185326 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 185265 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 185204 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 185143 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 185082 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 185020 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 184959 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 184898 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 184837 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 184776 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 184715 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 184654 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 184593 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 184532 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 184470 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 184409 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 184348 29 96.6 0 ............T................ | A [184321] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204912-203539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCH010000008.1 Salmonella enterica strain F2-2 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204911 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 204850 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 204789 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 204728 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 204667 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 204606 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 204544 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 204483 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 204422 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 204361 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 204300 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 204239 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 204178 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 204116 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 204055 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 203994 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 203932 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 203871 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 203810 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 203749 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 203688 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 203627 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203566 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //