Array 1 1281-773 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPH01000123.1 Vibrio cholerae strain A12JL5W24 NODE_157_length_1255_cov_20.976892, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1280 28 100.0 32 ............................ TCAACAACGAATTGAGTGTGCTCAGGCATACA 1220 28 100.0 32 ............................ TGATTGAGTAGGCACTGTGTCTTGATGTATTC 1160 28 100.0 32 ............................ TCTCAGGGGGGATTGGGTTGTAGAGGGAGAGC 1100 28 100.0 32 ............................ ACCAAGCTGGATGAAACTGCAAGCGCTGGCTC 1040 28 100.0 32 ............................ AAGCGCTGAGTTCGGGCATGGATACCACAAAC 980 28 100.0 32 ............................ AGATGGGCCGGAAAAAACAGCGGGATTACGAA 920 28 100.0 32 ............................ TCGGTCTAGCACTTGCTGTCCCTTTGGCAAAC 860 28 100.0 32 ............................ TGTCGATGGAGTTTCAATATACTCGGCAATGA 800 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : TAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGGCTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTAAAATCATCAAAATCCCAACTTCTTGTTCTGAAAAATCAACTTTTAGTGTTCAAATTGCACAATTTGGTATTTGAATTTTGCTAGATGCTGATTTGGTAGAAAGTGTTGGAAGTTCCGCAGTTTCAAAGTCGCTGAAAGCCAGCAAGTCTCGATGCTTCAACGTTGTTGGATGTTCAACTCGGTCAACTTGGTTTCACAAAAAGCAGCATCGTCGCTGAAATCGCGCTTTCTTTGTCGGAAATTCGGTAAGTGGCCAACTTAACCTTGAACGCTGTGAGTTTTGGCAGCTCACTTCACAGCTTTTGGCGTTAGACGTGTGTTTGAGTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5300-5507 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPH01000046.1 Vibrio cholerae strain A12JL5W24 NODE_51_length_9129_cov_26.915106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5300 28 100.0 32 ............................ TGCACTTTCCCGCAGGTGGTACACGCTTTATA 5360 28 100.0 32 ............................ TTGTTGATACGGATGTTGTTCTCAGAGCTCTA 5420 28 100.0 32 ............................ TTAATCGCAAGCCCGCCAAGCAGTTTCAAGGC 5480 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCTGCACAGGCAGCTTAGAAA # Left flank : CGCATGTGGCATGACGAGCAAGTACAAGTAATGGGGTCTTTCCAAAAAGGGCAGCGATAGAGTTTTGTCTTATCAAAAATATCGTATATGGGCATGTTCTTTCTCTGACGTTTTGTAAGTTGCCCTATCATAACCTCAAAAGTTCACAGGCAAAAACTTGCCTAGTAGATATGCATCAATGTGAGCTATGAGGTTGAATTTACAGTGTAATGTGGTTCTAATTAGCACGCTCATAACAAACGCTTCAAGAGGGACTGTCAACGCATGGCATTTTCGGTTTGAGTGGGCATTTGTGGTTACGGTTGTTTAGTTAAGCCGTGCGGTAGCGTTGCCAGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAATTTTCATA # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTGAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATATTACCTCGTTTAAGATTCGCGCTATACCTAACGATCAAAGTTAATTTATATTAACCATGTCGCATAAAAAAGGTATGACTCAGATAGTTGTACGATATAATGCTGAGCACGTAATTCAGTTTAACTTATGGACTTGAGGTATTTGATGGCTGCAGAAATAATTAGCATGATCAACTGGAAAGGTGGTGTAGGTAAATCGACATTAAGCCTTCATTTAGGTGTTGGGCTTATGCGACGTAAAGAGGGTCCAAGCCGACCCAAAGTACTATTAATCGATTTAGACCCTCAATGTAATTTGTCTTACCTTGCTCTAGGGGTTAACAAATATGTTGATGCTGTCTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCTGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96805-98036 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPH01000024.1 Vibrio cholerae strain A12JL5W24 NODE_24_length_110986_cov_31.339195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96805 28 100.0 32 ............................ TGCCATTTGCGCTTTAAGCTTTGCGATGTCTT 96865 28 100.0 32 ............................ AGACTTGCATCGCGTGGGATAACATAGTAAGA 96925 28 100.0 32 ............................ GCAGCGCTGGCCAGCGAAAACGAATGACTGCT 96985 28 100.0 33 ............................ CCCTCATTTGCAGCAAGCTCAACAATAGATCTC 97046 28 100.0 32 ............................ TGTCGTTTCAGCCAATGCATTGATGATTTCGT 97106 28 100.0 32 ............................ TCCATTATGCCGGGTGGGATTTGGCGCTCATC 97166 28 100.0 32 ............................ CAGGATGTTTTCTTTGCGTAAGCCGTGCATTT 97226 28 100.0 32 ............................ TTTTTGATGATGAATTTAACCGCGATGTTATC 97286 28 100.0 32 ............................ TGTCGTTTCAGCCAATGCATTGATGATTTCGT 97346 28 100.0 33 ............................ TATCTTTTCAAGTGCTGCATAGGTTTGCTGGAT 97407 28 100.0 32 ............................ ACTCTCATACATTCACAAGGCCGAAAGGGGAT 97467 28 100.0 32 ............................ AAGCACCACAGTTTGCAACGATTCAGATAGCG 97527 28 100.0 32 ............................ TAGAGCCATTTGCAACCTTATTTTGTGTAGTC 97587 28 100.0 32 ............................ AATCCACTAGCCAATGGCGACATCGCATAAAT 97647 28 100.0 32 ............................ AATCCACTAGCCAATGGCGACATCGCATAAAT 97707 28 100.0 32 ............................ TGCTTGACCAATCGGCCCCTTAATGATGTCGT 97767 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 97827 28 100.0 32 ............................ AACGGGAGACTCTTTCCAAGTAATGCCAACCA 97887 28 100.0 33 ............................ ATTACGGCGAACGATGGCATTGCGGTATTCGGC 97948 28 100.0 32 ............................ AAAGCATCTGCTCGTCACGGTCAATCAAGTCT 98008 28 92.9 0 ......................G.A... | T [98028] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGCGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGATTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCTTATGGTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCGAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGAAGAACTCTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGACACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //