Array 1 32897-33154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRQW01000008.1 Acinetobacter baumannii strain T229 T229_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 32897 30 100.0 30 .............................. CGACTGACATAACAATTAATTTTCCAGTGT 32957 30 93.3 30 ............................TT AGTAAAGGCCAAGACTACACTCTAAAAAAA 33017 30 96.7 30 ............................T. AGGGCGACTGCAAAAAATACTTCTGGACTA 33077 30 96.7 30 .............................G ACTATCCAGAAGGTGAAGTGCCAGATGCGA 33137 18 60.0 0 ..................------------ | ========== ====== ====== ====== ============================== ============================== ================== 5 30 89.3 30 GTTCATGGCGGCATACGCCATTTAGAAAAC # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : | # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17612-13201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRQW01000064.1 Acinetobacter baumannii strain T229 T229_contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17611 29 100.0 31 ............................. AAACGGATGCTACGTCATAAGGCTTTAATTC 17551 29 100.0 31 ............................. ACAGCAGTAATCGCAGCAGTACCGTCAGTTG 17491 29 100.0 31 ............................. ATGTATGTTTATTTTGATGCAGGCGGTAAAA 17431 29 96.6 31 ............................T AGGGGCATAAGGTGTTGAGCTGGATGCATTG 17371 29 100.0 31 ............................. ATGAGTTTTCAAACGAGGTTTGTGAGCTTAC 17311 29 96.6 31 ............................G ACCACATGTCGATGAATACAACTATGTTGAT 17251 29 100.0 31 ............................. TCACGCAAATTCACCGCGCCGTTTGCACAGC 17191 29 100.0 31 ............................. ATGCTTCAATCCACTCTTGATCAGTGTGACC 17131 29 100.0 31 ............................. GATGTTGTACATGATTTTTCAGGACAACCGT 17071 29 96.6 31 ............................T CTCTAAATAATGCAGGCATTAACTGCTACAA 17011 29 96.6 31 ............................C GTTACAACTTGCAGCACCCACTGCAAATTTA 16951 29 96.6 31 ............................T CACTCACAAGCGGCTCATTCTAATAGCTCGA 16891 29 100.0 31 ............................. CCAAGAGCCTTTATGAGATCAGCGTCGTTCA 16831 29 96.6 31 ............................T GAATACATTCTTGAGCATGAGTCAATGACGG 16771 29 96.6 31 ............................T ACTGGAGTGCCGACCAGTGGAACATGCCTTC 16711 29 96.6 31 ............................T TCTTCTCGAATAGTCACAAAACGGCAGATGT 16651 29 100.0 31 ............................. ATTGCCTTTATGTTCGATGTTTGGCATACGG 16591 29 100.0 31 ............................. ACAACTAAAGTGCAGGCTCTATCGAAAATGA 16531 29 96.6 32 ............................T GAACAGGTGATCGCTTTGTTATCTGCCACGAT 16470 29 96.6 31 ............................T CCACCATAGATTTTAATGTTCTTGTGTTGAC 16410 29 100.0 31 ............................. ACAAGGAATAGTACAACTCCGATCAGTGACC 16350 29 96.6 31 ............................T GTGTAAGCTTGCCGCCTGCAATAACTCGTGC 16290 29 96.6 31 ............................T TGTAACGTTTAGTAATGGCTTCCTGCTTAAG 16230 29 100.0 31 ............................. CCCCGAAGTCACGAATAAACTGTTCTGGTTT 16170 29 96.6 31 ............................C TGCGAACAATCGTGTTATTTATCATGAGCAA 16110 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 16050 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 15990 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 15930 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 15870 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 15810 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 15750 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 15690 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 15630 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 15570 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 15510 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 15450 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 15390 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 15330 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 15270 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 15210 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 15150 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 15090 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 15030 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 14970 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 14910 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 14850 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 14790 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 14730 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 14670 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 14610 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 14550 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 14490 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 14430 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 14370 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 14310 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 14250 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 14190 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 14130 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 14070 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 14010 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 13950 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 13890 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 13830 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 13770 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 13710 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 13650 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 13590 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 13530 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 13470 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 13410 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 13350 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 13289 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 13229 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 74 29 98.2 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAGCTTCAAGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23168-23674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRQW01000064.1 Acinetobacter baumannii strain T229 T229_contig_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 23168 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 23222 28 85.7 29 ...T.C.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT G [23227] 23280 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [23298] 23347 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 23407 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 23467 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 23527 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 23587 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 23647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19404-17392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRQW01000066.1 Acinetobacter baumannii strain T229 T229_contig_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19403 30 100.0 30 .............................. TCACTAATTCGCTATTAAGATTCATTCTTT 19343 30 96.7 31 .............................A TGTGCAAAATATCAAAAGAAGCCTTATTCTT 19282 30 96.7 30 ............................G. GTATTGAAGTTATTTGATGTTACAGATCCA 19222 30 96.7 30 .............................A TTGACTTAATAGTTAGGAGTGCCTAATATT 19162 30 93.3 30 ............................AA TATTTTTTTTGTAATTACCAGTTTTCTTGG 19102 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 19042 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 18982 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 18922 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 18862 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 18802 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 18742 30 96.7 30 .............................G ATTCAGTAGGTGCTAACTGGTATAACTTGA 18682 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 18622 30 96.7 30 .............................A AACCATTATTAGGGTTTACGGTATTACTTG 18562 30 93.3 30 ............................AG TCCATAAGACCCTCCATTTGTTTATATCTT 18502 30 96.7 30 .............................C AAACTCACAACCTAGAAAAGATTGCTAAGG 18442 30 96.7 30 ............................A. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 18382 30 93.3 31 ............................AC CAAAAGCTTTACGGTAAGACACGTTATGCAG 18321 30 96.7 30 .............................A CGAAAACAAAAGATACTCATGCACCAGAGA 18261 30 90.0 30 ...............T............AA CAGCATTTACACCAGCAACCTTTAAAGCAG 18201 30 96.7 30 .............................G TTACATGCCCAATTGGTTGGCGCATGTCAT 18141 30 100.0 30 .............................. CTAAGCGAAGGCTAACGCTCACATTCAAAA 18081 30 96.7 30 .............................G TAAAACCGAATCCCAAGCTGAATAGGTTTT 18021 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 17961 30 100.0 30 .............................. GTTGCGGCTCTCGCATGATGTGGTTTGATC 17901 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 17841 30 100.0 30 .............................. GATGCTGAAAACTTCACAGCAGGCAATCCA 17781 30 96.7 30 .............................G TAAAGGATGTGAGGAACGTCGTGAGTGGAT 17721 30 93.3 30 ............................AA CTGACTAGTGATTTGAGGAATGTGCTCACC 17661 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 17601 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 17541 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 17481 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 17421 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 34 30 94.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCATACGCCATTTAGAAAAGTCTGATATTTCGCCTGATCAATGCGGCCA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATCTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //