Array 1 59881-61236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRK010000012.1 Streptococcus thermophilus strain Vach60 Contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59881 36 100.0 30 .................................... GAAATCAAGTCGAACGTGTCTCAACTACTT 59947 36 100.0 30 .................................... CGGCTGCGCTAGAGTCAGATAAAGAAATCC 60013 36 100.0 30 .................................... CTGAGAAAGTATATTTACCGTCTTTAGGTG 60079 36 100.0 30 .................................... ACAAAAGTCAACATAGGAGATATAATATAT 60145 36 100.0 30 .................................... CTGAGAAAGTATATTTACCGTCTTTAGGTG 60211 36 100.0 30 .................................... AGCAACCGTAAAATTAAAAGAGTTAATTGA 60277 36 100.0 30 .................................... TATAGACTCTATCAAAGCAGCTACGCCCAA 60343 36 100.0 30 .................................... TGAATCGCTGTAGACGATGTCCCCGCTAGA 60409 36 100.0 30 .................................... CCCAGTGAAGAATGGCATTATAGACTTAGA 60475 36 100.0 30 .................................... TGCGTAAGCAAACTCACGGCCATTGATATT 60541 36 100.0 30 .................................... CTGCTAAAGAAAATTGTTTCCAAGAATGGA 60607 36 100.0 30 .................................... AAATGTAAGATATTTCCAAACCCTCTGCTC 60673 36 100.0 30 .................................... AGTTGAACGAAAAAGGTTTGCTTGATATAG 60739 36 100.0 30 .................................... AAATTTTGATGGTATTAAACTTAACAAGTT 60805 36 100.0 30 .................................... TTGAATTAGTTTTAATGAACAAAGCTATAC 60871 36 100.0 30 .................................... TACCCAAGATATTCTATCCCTGAAATCAAG 60937 36 100.0 30 .................................... CATTGACCAGATGCTAGAGTTAAAAGAGTT 61003 36 100.0 30 .................................... AAGTAGTACCGTCTGGATGGATTAAGAAGC 61069 36 100.0 30 .................................... AATGTGCTTAACATTTCTGATTGCGCCTTC 61135 36 100.0 30 .................................... TGCTTTCGTCAAAGGTTGAGTTCGCAATGC 61201 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACTAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGAATTGACAAGGACAGTTATTGATTTTATAATCATTATGTGGGTATAAAAACGTCAAAATTTCATTTGA # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 14445-14983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRK010000025.1 Streptococcus thermophilus strain Vach60 Contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 14445 36 100.0 34 .................................... AAAATACAGATATTTGTTTGTTATTATTTCATTG 14515 36 100.0 35 .................................... TTCTACTTCTGTTATTTTTAAATATTTGAGCATTT 14586 36 100.0 35 .................................... TTCTACTTCTGTTATTTTTAAATATTTGAGCATTT 14657 36 100.0 38 .................................... TGGCAGATAAAACATTTAACGTCCGAGCAATATTGAGT 14731 36 100.0 37 .................................... TGACAAATAATTTATGGTATAGCTTAATATCGTTGCT 14804 36 100.0 37 .................................... GTGCTTGTTTGGAAAATACTCCAGTACGCTTGGATCG 14877 36 100.0 35 .................................... TTTGTGCTGACGTGCCAACACTTTTAGCAAATTCT 14948 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 97.9 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAGTATTGATACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 7747-6457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRK010000041.1 Streptococcus thermophilus strain Vach60 Contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7746 36 100.0 30 .................................... CAAAATATCTCTGTCGTAGAATTTACCCTT 7680 36 100.0 30 .................................... TATTTAAGGTAGGTTTCAGAAAATCTGAAG 7614 36 100.0 30 .................................... GGTAGTTTTGGTTTTTATTTATATTTATTT 7548 36 100.0 30 .................................... AAAAATGGTCAGCTATTTTTCAGGTATCAC 7482 36 100.0 30 .................................... AAAGTTATTCGAGAGCATCTTACTAGGTTT 7416 36 100.0 30 .................................... TATGCAAGTAAAGGAATATGCATTATACAA 7350 36 100.0 30 .................................... GGTGGTGCTACACATACACTACGCTACGCT 7284 36 100.0 30 .................................... TTTGAGTTGTCTCTTTTGATTATGAAATGA 7218 36 100.0 30 .................................... TAATGCTGGTGGATTTTGAGACCAATCTGT 7152 36 100.0 30 .................................... TTTGAGTTGTCTCTTTTGATTATGAAATGA 7086 36 100.0 30 .................................... ACGTCTTACCTCTTGCAATTCTCTGACTGT 7020 36 100.0 30 .................................... ACGTCTTACCTCTTGCAATTCTCTGACTGT 6954 36 100.0 30 .................................... ATTCGGTGGTAAAGCTATCGAATACATCGC 6888 36 100.0 30 .................................... TTAGAAAGTGTTTTACTTGCGAGACTAGAT 6822 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 6756 36 100.0 30 .................................... ATGTTTCTAGGTACTTTTCTTTATCGTCTT 6690 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 6624 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 6558 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 6492 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATAATTTCAAGCAAAATCAACGCATCCATAAAGGGTTTGGCCAATGTGCTGACACACTTGAAAGCTTATTTGATTAACATTCTTCAACTCTACTTGAGTGTTTACACATAATTATTGACAGTATCGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGA # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //