Array 1 129319-130608 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWV01000002.1 Streptococcus thermophilus strain St1-WT St1-WT_contig_2_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 129319 36 100.0 30 .................................... CAGCACTAGCCGCAAGCCCTTGTATATTAA 129385 36 100.0 30 .................................... TAGAAATCAAGGAACTTGGATGAAAAGTAA 129451 36 100.0 30 .................................... ATATGAAAGGGAAATGATATGAAGAATGAA 129517 36 100.0 31 .................................... TTTTGGGATACAACACGCAGTCGTTGACTTG 129584 36 100.0 30 .................................... GTTTGAGATGCCAATGTTTTTCAATCCTTG 129650 36 100.0 30 .................................... GTATCAAAAGACGCATTCATGAAGCGAGCT 129716 36 100.0 30 .................................... AAAAACAATTGAAATTCATAATCAGCGCTT 129782 36 100.0 29 .................................... GCTTTTAACGTTTTAAGAGAATACCCTCT 129847 36 100.0 30 .................................... GTGACGCTGCAATGACTTGCCATAGTAATT 129913 36 100.0 30 .................................... ATACTGGTATATAGTAATTCATACTTCATC 129979 36 100.0 30 .................................... TTGGTTTCATATTTACTCCTTTGTGTTTTG 130045 36 100.0 30 .................................... CTGATTTGGTCTTGTTCTTTTGTCCCTTTT 130111 36 100.0 30 .................................... GCAGCAGTTGAGAACTTTAGCGTCCAGTGG 130177 36 100.0 30 .................................... TGCTACTATGAAGGACGCTGTTGATACTTT 130243 36 100.0 30 .................................... TCTTCTTTAATCTTTTTTAACGTCAACGTT 130309 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 130375 36 100.0 30 .................................... ATTCATTAATATCTGCAAGGATGTCTTGTT 130441 36 100.0 30 .................................... GAGAAAGTAGCCCATTCGGCCCATTCGGGG 130507 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 130573 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWV01000049.1 Streptococcus thermophilus strain St1-WT St1-WT_contig_49_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 19 52.8 30 -----------------................... AGTAGAGAGACCAGCACACTACTGTACTAC 50 36 100.0 30 .................................... CTTCGCACGAAAGTTTATTAGACAACTCGC 116 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 84.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : | # Right flank : TGATAGAGCTAGAATTGTCTTTTTTACCGAGTTTTTGTACTCTCAAGAT # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.21, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-A/C [Matched known repeat from this family], // Array 1 51382-49497 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWV01000012.1 Streptococcus thermophilus strain St1-WT St1-WT_contig_12_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51381 36 100.0 30 .................................... CTGACGTTCTAGTTCAGCAGCATCAGCGAT 51315 36 100.0 30 .................................... TTCAGTTTGGCTTTTTATTTTAAAAAACAT 51249 36 100.0 30 .................................... GAAAATCGCTAAAGAAGCAGTTAAGAAGTT 51183 36 100.0 30 .................................... TGTGGCGCTGTCCTATGACCGTACTGGTCT 51117 36 100.0 30 .................................... GTTGACAGTTAAATATAGCTTTACAGGAAA 51051 36 100.0 30 .................................... GTCTTCTAATACAGAAACACGTTGTTGACT 50985 36 100.0 30 .................................... CCCATGACATCAAGATGATATCCCCTGTCA 50919 36 100.0 30 .................................... AATGAAGAAGCCAATTCAAGCGCAAGGGTC 50853 36 100.0 30 .................................... CGAAATAGACGCTTTAAGCATAATGGAAGT 50787 36 100.0 30 .................................... GCTCTTGGCTCAGCTCACAAAAGAATAGTT 50721 36 100.0 30 .................................... CTCTAGCACGCTAGTATGATCGTAATGACC 50655 36 100.0 30 .................................... TATAGAATACAAGAAGATTAAAACAGTACT 50589 36 100.0 30 .................................... TGAGATTGGTGCCTTAACACAAGATAAATT 50523 36 100.0 30 .................................... AACTACTTAGGAACAGTAGCGAGGGAGATT 50457 36 100.0 31 .................................... CCTTAAATGCCAACGGAATCCTTAAGATTAA 50390 36 100.0 30 .................................... CTTCGGTGTACACGCTCATTTCAATGGTTC 50324 36 100.0 30 .................................... CTAAAGAGCTTCTACACGTAGCTAGCAAGT 50258 36 100.0 30 .................................... CTTTCCAAACGTTACGATTTGATGTTGGAT 50192 36 100.0 30 .................................... AGCTATCTCCATTAGTTCTTGACGTCCCTT 50126 36 100.0 30 .................................... TCTTTTTCAGCAAACCATTTCTTAACACCT 50060 36 100.0 30 .................................... TGAAGAAATAGTCATGATGAACCCAGTTAG 49994 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 49928 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 49862 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 49796 36 100.0 30 .................................... TTATATTTTTTTAAGGCGGTCAGTTTGGTC 49730 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 49664 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 49598 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 49532 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //