Array 1 22044-23415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVQ010000031.1 Erwinia amylovora strain Ea2-97 Ea_2-97_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22044 29 100.0 32 ............................. ATGCCCCGAGAACTCAAAACGTTGACGTTACA 22105 29 100.0 32 ............................. CCTACGTCCTTTATCTGATGGCGACTAATAGG 22166 29 100.0 32 ............................. CCGCAACCGGAACAACAACGACCACCGGACGC 22227 29 100.0 32 ............................. TAACAGGAAACCCCATGGCAGAAACATTTATA 22288 29 100.0 32 ............................. GGCACGGAGCGAAGAGTGGCAGACACCGATGA 22349 29 100.0 32 ............................. CTTAGCTACCAGAACAAGCAAGCAGCGTCACG 22410 29 100.0 32 ............................. AGCATGGGAGCAGACGACGGAAAAGCCGGCCT 22471 29 100.0 32 ............................. CAAATGAAATCCTGAAATCCCAGGAGGTTCGA 22532 29 100.0 32 ............................. TTGGGGCGGACATTGCTCCTTTGCTCCAGGTA 22593 29 100.0 32 ............................. AGCGGCAGGCGGCCAGAGATCATCATGGCGTT 22654 29 100.0 32 ............................. CGAACGGATAACTGTCACGTTTTCTGGCGGGA 22715 29 100.0 32 ............................. TTATCGACGACCACTATACGGAAATGCAGGAA 22776 29 100.0 32 ............................. CCTCGTTAATTTATGATGCCTGGGGGTTATTA 22837 29 100.0 32 ............................. TGGTCAATTTTCCTGCTCAATGTCAGTTTTCA 22898 29 100.0 33 ............................. AATGCCAATACGAGTACGCCTTAAATATTTGGC 22960 29 100.0 32 ............................. TCTGCCATCACCAACAACAACGCTTGGCATGT 23021 29 100.0 32 ............................. TTGGCTCAACAGAACAACAACGCAATCCAGCT 23082 29 100.0 32 ............................. CAGGGCAATATCCGTTGATTCGCTCATATCAA 23143 29 100.0 32 ............................. CCATCAATAACCGCGATGGCAAATCGCTTCAG 23204 29 100.0 32 ............................. GAAAAAATATCCGATCTCCGGGAAAAGCAGGG 23265 29 100.0 32 ............................. CTTTTGCCCGGTTGCGAAGTCCTGGAACTGGT 23326 29 100.0 32 ............................. TAATGGTTAAAGTGAGCGGTGGCGGAACGACC 23387 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCAGATAAACCGCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53194-55112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVQ010000031.1 Erwinia amylovora strain Ea2-97 Ea_2-97_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53194 29 100.0 32 ............................. AAGTCATCAGCAATATCGCCAAGGTAGTCATC 53255 29 100.0 32 ............................. CCGGGTATGACTTTTACAGCACATTTTCAGAT 53316 29 100.0 32 ............................. TACCCAATGCCACCCAACAAATTTCTGATTTG 53377 29 100.0 32 ............................. CTCGTCGATATGCTTAACGCCGAACTCTTTAT 53438 29 100.0 32 ............................. AATATGAAGCACTCATCACGTCCTCTTCTATT 53499 29 100.0 32 ............................. CAGCAGTTGCAGCTGCCTGTCCCATGAGCATG 53560 29 100.0 32 ............................. GTTCTTACTTCGGATTAACTTAATAACGCTCT 53621 29 100.0 32 ............................. AAATCCGCCGCATGGCAGAGATGGATGGAATT 53682 29 100.0 32 ............................. AGTGCGGCAGTTTTGGCCGCTCAAATTGCAGC 53743 29 100.0 32 ............................. CGATTTGGCGGAAATGTCGGCGGAGATGCCCC 53804 29 100.0 32 ............................. CCATTGCGTTGCGTGACGTGGTTCGCGTTACT 53865 29 100.0 32 ............................. ATGGCCTAAAGCACCGCCTGGTGTCTCAAAAT 53926 29 100.0 32 ............................. AAAACAGCCCCATTCCGGGCGCTACTTCAGAT 53987 29 100.0 32 ............................. CTTGCGGACAGAATTTCTGACGCAGGCGCAAT 54048 29 100.0 32 ............................. CTATCTCGAAATGTGAGCCGCAGTCCCCAGCG 54109 29 100.0 32 ............................. CCATCGCCGGAGCCGGAGCCATCGCCGGATCC 54170 29 100.0 32 ............................. CCATATAGCAGATACGCCCAGCGCTTCCGCTA 54231 29 100.0 32 ............................. TCAATTGCATGCTGCCGGGAATCAAAAACAAA 54292 29 100.0 32 ............................. ATAAAAAGGCTCATGAATAACTTACTTCTGCC 54353 29 100.0 32 ............................. CGGCACACCCGCCTGAACTAACCAGCTCGCCC 54414 29 96.6 32 .................A........... GCAGCTGGCAATGATGACGAATGAGGATAGAC 54475 29 100.0 32 ............................. GGGGAATAAAGATATTAATCAGGATTTGCGTG 54536 29 100.0 32 ............................. TGCAGGCGCTGCAGGAGGGGGAGAACGTCACC 54597 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 54658 29 100.0 32 ............................. TCATAGTATTCCATCACTACGACACCCGTTAC 54719 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 54780 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 54841 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 54902 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 54963 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 55024 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 55085 28 79.3 0 ...........AC..-A....C......A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.7 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATTTAAAAACGGGTCTTTTTCACAGTAGATAATCTGGTAGATTTTGACGGGTGAAAAAATCCGTTATAATTCAGCTGGATGGATTTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 64577-64964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVQ010000031.1 Erwinia amylovora strain Ea2-97 Ea_2-97_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64577 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 64636 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 64696 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 64756 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 64816 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 64876 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 64937 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : ATGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGAAAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACCGCCGTACAGGCGGCTTAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //