Array 1 26117-25538 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSEF01000374.1 Escherichia coli strain JEONG-5120 NODE_21_length_34771_cov_3.86081_ID_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26116 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 26055 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 25994 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 25933 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 25872 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 25811 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 25749 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 25688 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 25627 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 25566 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1345-157 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSEF01000676.1 Escherichia coli strain JEONG-5120 NODE_453_length_1356_cov_4.04312_ID_905, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1344 29 100.0 32 ............................. TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 1283 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 1222 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 1161 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 1100 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 1039 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 978 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 917 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 856 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 795 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 734 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 673 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 612 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 551 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 490 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 429 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 368 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 307 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 246 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 185 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //