Array 1 6662-9625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYR01000058.1 Propionibacterium freudenreichii strain CIRM-BIA 121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 6662 36 97.2 35 ................T................... GGTTTGATCCATACCCGGAATGATCGCTCTTTCGC 6733 36 97.2 37 T................................... CCGCCCGAACTCTAGGTTTCTGTGCGCACACCATGAC 6806 36 97.2 38 .............................A...... ACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCG 6880 36 100.0 36 .................................... AGAACGTCAGCCCCATACCCTCAAGCACCTGACGGA 6952 36 100.0 38 .................................... ATCGTCTGCTTGGCAGTCTCCGGGATACCCCCAAAGAT 7026 36 100.0 34 .................................... TTGCGATCATCTGGTCCACGTCGAGCCCGGTGCC 7096 36 100.0 36 .................................... TGGGCAAGACGACTCTGTCCACGATTGAGGGTGACG 7168 36 77.8 57 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTATCGAACGGCGGAAACCAATCGGAACGGCCGCC 7261 36 94.4 37 ........................GA.......... TGGACCTGCCCGCCTGGACCCTGCCCGCCGGCCACTT 7334 36 100.0 37 .................................... GTGGGGCCCTTCTTGATTTGTCCTTGTGGTACACAGT 7407 36 75.0 32 ...........................NNNNNNNNN NACGGTTTGACGATGAGCAAGGGTGAGATCGA 7475 36 100.0 38 .................................... GCGAGGGCCAACCAAACGAACTGCCAACAACAAGGAGT 7549 36 75.0 35 ...........................NNNNNNNNN NCCGCCGAGGTCGGTGGATTTTACAACGAGTGGGT 7620 36 100.0 37 .................................... CCCGAGCAGCGTCCCGAGCGGCGTTCAGAGCGGCGCC 7693 36 100.0 39 .................................... TTGAGTCGCGAAAAGCCTTTAACGAGAGCCACCCCTGCG 7768 36 100.0 39 .................................... GGTATGGTCGTCCACGGCGCTAGAGGGTAAGACCGGTAA 7843 36 100.0 34 .................................... CCGGACCAGCCAGATCGCTGGTCGCCGACGCGAA 7913 36 72.2 33 ..........................NNNNNNNNNN CTCGGCACTGCTGGCGTGTGATCTGATGCGCAC 7982 36 77.8 36 ............................NNNNNNNN NNCCTTGTAATCAAGTCTGTCAAGTGAGCTGGTAGG 8054 36 97.2 36 ..........................A......... ATCACCCCTTCAGCAGGAAGCCAGTGGACCTTACCG 8126 36 75.0 35 ...........................NNNNNNNNN NNNGTGCAGTCGGTTTCCACCGTCGATGTCGACAG 8197 36 77.8 39 ............................NNNNNNNN NNCCGGTTCGTCGGGGTCTTCGAGCAGGGTGACGCGGGT 8272 36 100.0 36 .................................... GCCACGAAGGGTGAGTCGGTGACGGCGCGAGAATAG 8344 36 100.0 35 .................................... ATTCGCCAGGTGAGCGGGAAGGGTGCAAATAGCTA 8415 36 80.6 39 .............................NNNNNNN NNNCAACGACCGGCCCGACGCCTTGAGCTCCTTGACGAA 8490 36 100.0 37 .................................... TGTGCGACGCCCAGCCGGCGCCAACGATATTGTGGTC 8563 36 100.0 36 .................................... GGTGAGCTCTGACTGGATTGTGTTCATGTGGAGACC 8635 36 77.8 79 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGCGTCCGCCATCCCTTTTCCAGCCAGGCATCGG 8750 36 72.2 28 ..........................NNNNNNNNNN AGGCGCTGCGAGGTGCCGCCAGACAAGA Deletion [8814] 8814 36 100.0 36 .................................... TGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGC 8886 36 100.0 40 .................................... TCTCCGCCACCAAGGCCAAGGAGACCCTGCCGCCCGACGT 8962 36 100.0 38 .................................... TTGCTGTGCAATGGCAGTCACTCCCGGTGGTCTTGCCT 9036 36 100.0 38 .................................... TTGTTTCTCCCTAAAACTTTAGTGTATATCCGACTTCT 9110 36 77.8 41 ............................NNNNNNNN NNNNNNNNNNCGATCCGTCTGTCGAAGGACTCGAACGGCCA 9187 36 100.0 36 .................................... AATAGGTGCGGTTCATGCCGCGACCGCGACGCTCGG 9259 36 100.0 35 .................................... CAGAAGTCTGTGCCGTCCGGGCGAACAGACTTAAA 9330 36 75.0 84 ...........................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTGGAGATGGTCCGCCCGATCACATCGAC 9450 36 100.0 34 .................................... GGGTTTACGCGAGGGTGAGCATCAATGCCTACCC 9520 36 75.0 34 ...........................NNNNNNNNN NTACGGCTTTTCCGTTCAGGAATTAGCGGACGGT 9590 36 97.2 0 .......................G............ | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 40 36 91.7 39 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : CCCCTCCGTGAGGAGGGACTTTGGCGGGTGTCGCAAATGCCCATCTATTGGCGTCAGCCTCAATGAAGGGGGCATGCCTTGCCGGCCCCGCCGGATTTAACCGTAGCGGGGGGAGCTGTGTGGGGGCACGTCTCGGCATCGCCAGTGCGTGACGAAAACGCCTTGTCATGGCGGTTGTCAGGTCCGGAAACGCCTAGGGCTCGTGCGCGGCCACGTGGCCTTGTCAGTGAGCGCTGATCGGGGTGACGGGTCCTCGCGCGGGTGGACGAGAGGGTGGGCGGTTGGACGGAATCGGTGGCTCTTGGCGCCACCGGGGGTGCGAAAAAGGGAAGGTGGGTCAGCTGGGCGTCTGCCCTACCTCCCACCTTCTCATGGCGAGTCTAGCTCTCGGCGCCGGCGGGAGTTCCGTGAGTTTCGGGACGTTGAACGGGTGGAGGGCTTCGCCCGGGGAGAGGGGCAACGCCACGTCAAGGCGCCATCGTCTCCGAGAGCTGGCGCAA # Right flank : CTCCTGCTCGTGGAGCCTGTAGGTGCCATGTGGACCCCGCCTCAATGAAGGGCCCCTCCAGAAGGA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [31-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 57626-57288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYR01000056.1 Propionibacterium freudenreichii strain CIRM-BIA 121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================================================= ================== 57625 26 100.0 44 .......................... CGGGGTGTCGCCTGGGATGCCGCTCGATGTTCCGGCCTCAATGA 57555 26 100.0 44 .......................... GGTTGCGTTACTCGTGCGTCCTGGCACTTGGCATNNNNNNNNNN 57485 26 100.0 71 .......................... TGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 57388 26 96.2 49 N......................... TTGAGGACCAGAGGCGTTCCCATACTAGTCGTAGCTTCAGCCTCAATGA 57313 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================================================= ================== 5 26 99.2 52 AGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : GGAGGGGCAATGATCCACATGGTAGACCGGCGACTCATGATGCCCATCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCAGTTCGATCATTACATCGAAGGTCTTATCGAAAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCGCATCTATGACACCCAGTTCGCCACGGAATACNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCGGCTATCAGAGCGCCTACAACACGCTCACAGGAAACCAATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGCGAAGTCGCGTTATGGCGCTGAGGGCATGTTCGGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGGCCATAGTATTCGCGATGTCAAGGGGGAAGCTCCACCAATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGCAGCGTCCCGAGCAGCGACCTGCGCGGCGACCCGAGATTGNNNNNNNNNNA # Right flank : GGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGCGGCTCCGCGTGACAACCGGGCCGCAGAGCCGCTGGTCGTCAGATGATGATGCTGCGTCCGCCGCTCTGGTACCTCTGACCGCCCAACCAGGTGATGCGTTGGGCGTCTGCCGACGTGGACATGCCCAGGTCGCAGATCACCACCGAGTCCTCATCAATATCCATCGCGTCGGTGAGATCGTGGCGTAGCACCAGCAGGTGTGACGGCGGACAATCAACCATGAATACGCTGTACTGCACACGCTCCCCGTAGCCCTTCAGTACCGTGGCCAACCTGGTGCGACGACGGTCATCGGGCACGTCGTAGGCGATCAGAAAGCAATGGGAATCTCGTCGGCTCATCTGACCGTCATTCCTATAT # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.79, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 57677-57862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYR01000056.1 Propionibacterium freudenreichii strain CIRM-BIA 121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ==================================== ================== 57677 39 100.0 36 ....................................... GTGGAGCTTCCCCCTTGACATCGCGAATACTATGGC 57752 39 94.9 33 .....................................AC CGAACATGCCCTCAGCGCCATAACGCGACTTCG 57824 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ==================================== ================== 3 39 98.3 35 CGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTG # Left flank : CAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTGAAGCTACGACTAGTATGGGAACGCCTCTGGTCCTCAAATTGCCCCTCCTTCTGGAGGGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCAAGTCGCTGACCACCACGCTGGCCCACAATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNATGCCAAGTGCCAGGACGCACGAGTAACGCAACCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGGAACATCGAGCGGCATCCCAGGCGACACCCCGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNCAATCTCGGGTCGCCGCGCAGGTCGCTGCTCGGGACGCTG # Right flank : GGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCCGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNGTATTCCGTGGCGAACTGGGTGTCATAGATGCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTTTCGATAAGACCTTCGATGTAATGATCGAACTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGGATGGGCATCATGAGTCGCCGGTCTACCATGTGGATCATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNGGAACGAACAATGCTCGAGCGAGACCTGGAGTTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGAACCGTGTGGCGACACATCGAGGAGCACGGTGACGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAAGCCTCAATGAAGGGCCCCTCCAGAAGGANNNNN # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-18.00,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 57970-58150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYR01000056.1 Propionibacterium freudenreichii strain CIRM-BIA 121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 57970 36 100.0 35 .................................... TTTTCGATAAGACCTTCGATGTAATGATCGAACTG 58041 36 100.0 38 .................................... GGATGGGCATCATGAGTCGCCGGTCTACCATGTGGATC 58115 36 75.0 0 ...........................NNNNNNNNN | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 91.7 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CTTCTGGAGGGGCCCTNNNNNNNNNNATGCCAAGTGCCAGGACGCACGAGTAACGCAACCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGGAACATCGAGCGGCATCCCAGGCGACACCCCGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNCAATCTCGGGTCGCCGCGCAGGTCGCTGCTCGGGACGCTGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGTGGAGCTTCCCCCTTGACATCGCGAATACTATGGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATACCGAACATGCCCTCAGCGCCATAACGCGACTTCGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCCGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNGTATTCCGTGGCGAACTGGGTGTCATAGATGCGG # Right flank : NNGGAACGAACAATGCTCGAGCGAGACCTGGAGTTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGAACCGTGTGGCGACACATCGAGGAGCACGGTGACGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAAGCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNNNNNNACCGAAGCTCGCCTGATACTCGAAGCCCTCGCGGCCGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCTGAGGGCGGCATGCGACTCTCTATGGCTTCAGATTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAATGAAGACGACGAGTCATCATCTGCGCCCCTGAGACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAAGTCATGGACGGCCTACGTGTCGGAGGTGATGGGATTGCCCCTCCTTCTGGAGGGGCCCTTNN # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 58185-58364 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYR01000056.1 Propionibacterium freudenreichii strain CIRM-BIA 121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 58185 36 100.0 37 .................................... GAACCGTGTGGCGACACATCGAGGAGCACGGTGACGG 58258 36 100.0 35 .................................... ATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAA 58329 36 77.8 0 ............................NNNNNNNN | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 92.6 36 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : TGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGTGGAGCTTCCCCCTTGACATCGCGAATACTATGGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATACCGAACATGCCCTCAGCGCCATAACGCGACTTCGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCCGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNGTATTCCGTGGCGAACTGGGTGTCATAGATGCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTTTCGATAAGACCTTCGATGTAATGATCGAACTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGGATGGGCATCATGAGTCGCCGGTCTACCATGTGGATCATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNGGAACGAACAATGCTCGAGCGAGACCTGGAGTT # Right flank : NNNACCGAAGCTCGCCTGATACTCGAAGCCCTCGCGGCCGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCTGAGGGCGGCATGCGACTCTCTATGGCTTCAGATTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAATGAAGACGACGAGTCATCATCTGCGCCCCTGAGACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAAGTCATGGACGGCCTACGTGTCGGAGGTGATGGGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNAAGGCATCCTTCGCATAGGTGCCACAGCCAGAATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCATTCATCGAACTGCGTGAAAGGGGAGAAAGGATTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGGGACGTCATGGTGGCGTTCGCCTGGATAGCTTGCGAATTGCCCCTCCTTCTGGAGGGGCCCTTCA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 58404-59012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYR01000056.1 Propionibacterium freudenreichii strain CIRM-BIA 121, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 58404 36 100.0 37 .................................... TCTGAGGGCGGCATGCGACTCTCTATGGCTTCAGATT 58477 36 100.0 37 .................................... AATGAAGACGACGAGTCATCATCTGCGCCCCTGAGAC 58550 36 100.0 35 .................................... AAGTCATGGACGGCCTACGTGTCGGAGGTGATGGG 58621 36 75.0 33 ...........................NNNNNNNNN NAAGGCATCCTTCGCATAGGTGCCACAGCCAGA 58690 36 100.0 35 .................................... CATTCATCGAACTGCGTGAAAGGGGAGAAAGGATT 58761 36 100.0 38 .................................... CGGGACGTCATGGTGGCGTTCGCCTGGATAGCTTGCGA 58835 36 100.0 36 .................................... GACGATGCCGCCACAGATCGTGATCGTCTGGCTAGA 58907 36 100.0 34 .................................... ATTCAGTTTTTTGATGAAAGGGGGTGAGCAAAAT 58977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 97.2 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : AATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNGTATTCCGTGGCGAACTGGGTGTCATAGATGCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTTTCGATAAGACCTTCGATGTAATGATCGAACTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGGATGGGCATCATGAGTCGCCGGTCTACCATGTGGATCATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNGGAACGAACAATGCTCGAGCGAGACCTGGAGTTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGAACCGTGTGGCGACACATCGAGGAGCACGGTGACGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAAGCCTCAATGAAGGGCCCCTCCAGAAGGANNNNNNNNNNACCGAAGCTCGCCTGATACTCGAAGCCCTCGCGGCCG # Right flank : AACTGGGTGGCGACGAAGTTCGGTGCCGACGAGGTCAAATTGCCCCTCCTTCTGGAGGGGCCCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //