Array 1 254631-255315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMZ010000002.1 Listeria booriae strain FSL L7-1844 NODE_2_length_387549_cov_42.746661, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 254631 30 100.0 36 .............................. ATTCGTTGCTGGATCGATACCTCTGGAACGCCGGCT 254697 30 100.0 36 .............................. AAGTCTGTTGCGCAGACGGCTGTTGCTAATATTGAG 254763 30 100.0 35 .............................. GCCAATTAGTAAGTTTGTGTTGCGTATGAAAGATG 254828 30 100.0 35 .............................. TTACATAACACCGGCTTTCTCAACTATAGTTTTCG 254893 30 100.0 36 .............................. AGAAGTGGAAGGTGAAGACCCAATTCGACGCGATTC 254959 30 100.0 36 .............................. TTCGCTTACTGATGCGGGCGGAACATCTGTTAATCC 255025 30 100.0 36 .............................. GGCGTATGCCTACGGCAGCGATGAGGTACAGGTAGT 255091 30 100.0 35 .............................. TTACTTACGTTAAATGCGCTGTTTACAATGACGGA 255156 30 100.0 35 .............................. ATCAGATACTAAGTTGATTACAACCCCTTATTATA 255221 30 96.7 36 .................G............ AATTCTGACGGGTCTATCAATGAATCTGTAATACTA 255287 29 86.7 0 ....................-...C..G.C | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 98.5 36 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGTCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGAGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGCTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGGTTCTGGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : CTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATTTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 16502-15347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMZ010000014.1 Listeria booriae strain FSL L7-1844 NODE_14_length_103449_cov_42.669693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16501 36 100.0 29 .................................... TATGGGCGTTGGGAAAACACGTACTATAT 16436 36 100.0 30 .................................... ACTTGAACTTCAATTATGCCATTGTCTTCT 16370 36 100.0 30 .................................... ACACTAAGGTGAAATGTTGCTATTTAAGCA 16304 36 100.0 30 .................................... AAAAAGTTATATAAACTCTTCACTAGCTCC 16238 36 100.0 29 .................................... ACAGTTCGCTATCCGTGTTATCAATGGCA 16173 36 100.0 30 .................................... ATCGGTGTTTTTTATATTGCCAGATTCATT 16107 36 100.0 29 .................................... TGAATTATCCGGACTAAGTAATGAAACCT 16042 36 100.0 30 .................................... GCGCTAGAATCAGCGAAGCCCTCGGGTTGC 15976 36 100.0 29 .................................... CTATTATACGAAGAGATTCCGCGATGATG 15911 36 100.0 30 .................................... TGGGGCGGAGGCAAGAGGTTCTAACCTATT 15845 36 100.0 31 .................................... TCAGTCTACATGCAAATCAAATGGGCATTGT 15778 36 100.0 29 .................................... TTATAATAACGACTTCAACAAATACGCGG 15713 36 100.0 30 .................................... TTGCCAACCCGATACTAACGAACTCGCCTA 15647 36 100.0 30 .................................... AATAGACGGCATTGTGGATGGTATCTCCGC 15581 36 100.0 30 .................................... AATTACTGTTAGCGTATAAGCACCTAACAA 15515 36 100.0 30 .................................... GTTCACCTCCGTATTAGTAACAAATCCTGT 15449 36 100.0 30 .................................... AAGAAGAGTTAAAACGATCGCTGATTGGGG 15383 36 80.6 0 .......................TAA.G.....CCA | C [15351] ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.9 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAGTATTGGGTATGAGTATAACAAAACCAACCCTTGTGTTTGTGGAGGGATTTAGGTATGGTCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACGGGAAATGGCTAGAAAAGGTATGCATGTTATTGTACTTGATGATAATCTAGTCGGTGCCTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAACTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCGACAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCCAAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : TGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGTCATTTATATGCGGATTCGGGATTTAGCCGATGCAACCCATGTTAGCACAACGACAATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTACGCGCAGAATCGGACGAAAATCAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTGAAACGTACTGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATCGCTGAATATGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 53636-53993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMZ010000015.1 Listeria booriae strain FSL L7-1844 NODE_15_length_97210_cov_37.736535, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 53636 30 100.0 36 .............................. AGGGATTATAAGAATAAAGAACAATTTATCAGAAAT 53702 30 96.7 36 ...........................T.. GCAGGCAAACGCTAGGCTGTTCCGACAAGGGCAAAA 53768 30 93.3 36 .............C.T.............. ATCGATGCGGATGGCAAACAAGAAAAAGGTTCACTG 53834 30 96.7 35 .............C................ CCTGCCATCAATTGCTTAATTCCTTGTGATTTCGC 53899 30 100.0 35 .............................. GGTATAAGCAAAAACTATAATACCAAATAGCAAGA 53964 30 86.7 0 ....................C...A...TC | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 95.6 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAACGCAACATCAGACCAGTGCCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCAGGCACAACCAAGTCAGTATTCGAAGACTTTCAAGTAGCAAAGACAAATCGCCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGTTTAGGGGGAGAAGGGGAAAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAAACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTAATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATACCGTTATCGAGCTCCTTTAACAAATACAACGGCATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 102289-101145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMZ010000004.1 Listeria booriae strain FSL L7-1844 NODE_4_length_371856_cov_41.133482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 102288 30 100.0 38 .............................. TAGCATCCGCTGTACATTTCCGACTCTTCGGTAATTTC 102220 30 100.0 34 .............................. GTTGACATAGTGTCCGTTTTAGCGCCGTTCTCAT 102156 30 96.7 34 .C............................ CCCTTCAAGGCATAATAAAAGCACTGTCATATCA 102092 30 100.0 35 .............................. ACTACTAAAACAATGGAAGTACTTATCAATGATCC 102027 30 100.0 35 .............................. TCAGTAATTTAGACATCACAAGTCACCTCGCATTT 101962 30 93.3 34 CG............................ GTGTAAACCTCGCCTGCATGTTCGTCCGTATCAA 101898 30 100.0 35 .............................. TCTTTAGAATCCTCTGATTCTAATTTTTTCACATA 101833 30 100.0 36 .............................. CTGGTATTTGCGATGTTCAACTACAAATACATTATT 101767 30 100.0 37 .............................. TTCAATGCGAAATTCTCGCCACAGGACGACGATTTCG 101700 30 100.0 35 .............................. CGATTAGGATCACTTGCATGACGTGGCATTTCTCT 101635 30 100.0 36 .............................. ACTCGTGTTCTGCTTCTAAAAAACGGTTTGTCTTAT 101569 30 100.0 35 .............................. GAAATAAGCTTTCCGTAACTGTCATACAGCCCATC 101504 30 100.0 36 .............................. CAGGCAGGCACCTGCGCCCTCGCGCATCCCTAATAA 101438 30 100.0 35 .............................. ATCCACTCGGCAGCTTCTTTCCCTTTGCCAATAAC 101373 30 96.7 37 .............................G AGGGGGGGTTACTCATTAGGGTTCGCTTTCGGTACCT 101306 30 96.7 36 .................A............ GCCGTTATTGTGGAACCAGCTTTCATTGATTCAGAT 101240 30 100.0 36 .............................. AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 101174 30 80.0 0 A......C.C.....C.A......A..... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACGCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGTGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTGTAGAAAAATCTGTCGACCTCTAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTCAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAGAATTCAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGCTTGGCAGACAATCTCTGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCTTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGAGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCAAATGCTTTTGGGGTTCCCCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTTTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATTTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATATC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 195643-196998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMZ010000004.1 Listeria booriae strain FSL L7-1844 NODE_4_length_371856_cov_41.133482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 195643 36 100.0 30 .................................... GAGTGCCGCACTCGCAAAAGCACTAGGTTT 195709 36 100.0 30 .................................... CGTTTTCGTTCGATGGTAAATCAGTCAAGA 195775 36 100.0 30 .................................... TTAACATGAAAAATCTAGCTGATAACAGCG 195841 36 100.0 30 .................................... ATCCTGCGCGATGGTCATGTAGGTTCTCAC 195907 36 100.0 30 .................................... TCAACCTATCGCTATACTCTGAACCATCTA 195973 36 100.0 30 .................................... GACTTATGAAAACAATTGGCGACACGATAC 196039 36 100.0 30 .................................... TTGTCTATTTTAAACTAAATTTTGACCTAC 196105 36 100.0 30 .................................... GAGCATTAGGAAGATTAGACGCAACTTTTG 196171 36 100.0 30 .................................... ATGAAGGGGATTAACTTGATGCCTGCACCT 196237 36 100.0 30 .................................... TCTTGATACCAGCTTTGTGTCGTAAATATC 196303 36 100.0 30 .................................... TTAAAGCCTGTTTTGCCGAGCCTTCCGAGT 196369 36 100.0 30 .................................... GTGATGCAAACAAAAATACTCGTCCCGAAG 196435 36 100.0 30 .................................... AGGTCGTGTTGTATCGTGAACCTTTGACGT 196501 36 100.0 30 .................................... ATACGATGTTTTAAATGTGTGTCGCTTGCC 196567 36 100.0 30 .................................... TTCTAGTAAGGTGTAATACTTCCCGTTCTT 196633 36 100.0 30 .................................... ACTTCGAAAATTTAGAAGTTGTCGCAATAA 196699 36 100.0 30 .................................... TGAAATTCGATGCTAAAGGAAATAGATCGT 196765 36 100.0 30 .................................... ACGCGACTGTGGCGGCAAGCGTCGCCGACT 196831 36 100.0 30 .................................... GGATATTTAAAAGCCCGACATAGTTCGATT 196897 36 97.2 30 ......................G............. AAAAATGGAACAACGCTTACTTGTTGCTGC 196963 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.3 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : CTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCGTCTTTCTTCAATAAACGCATAACTTCATCATTTTTGAGAAACGGTTCTAGTGAGTCTTCCAAGTAAAAAACACCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTATTGCACTCCTAACTGCTTTCGAAACTAAAATAGGTTACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGTTACTAGCCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAGG # Right flank : CTTTGTTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGAACGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAAAAAGTTCTCACCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCCGCCTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 200448-200682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARMZ010000004.1 Listeria booriae strain FSL L7-1844 NODE_4_length_371856_cov_41.133482, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 200448 36 100.0 30 .................................... ACGTTGTAAAAGAACAGGCCGCTGACCAGA 200514 36 100.0 30 .................................... GTAAGTAGCATATTTGTTATCACGCACAAT 200580 36 100.0 30 .................................... TAAAGTTGGCGATCGCGTGCAGTCTGTCGC 200646 36 83.3 0 ..........C...............TG.A..C..A | A [200675] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GCTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACAATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTTTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCTCTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTACCCACTTTGCTAATAATTTAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTACATTAGAGGCACTTTCCCCAGTATTCACACCATATAACACAT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //