Array 1 136171-139404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000010.1 Anabaena catenula FACHB-362 contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 136171 37 100.0 36 ..................................... TCAGGGCTGGCAACGGATTGGGGTATTTCCTGGGAT 136244 37 100.0 41 ..................................... CGTACTTTACCCAAGATTTCCAAACTCTAGTCGTTGGGAGA 136322 37 100.0 33 ..................................... GAATACGCACACTGTTTACATCAACCCAATCAA 136392 37 100.0 34 ..................................... TTGCTTGGCTTCTTTGGCTAACGTTGTGATGCTA 136463 37 100.0 40 ..................................... GTGGAGATTGAATCGAAGTCAAAGCACCCCCCCCTAGAAT 136540 37 100.0 41 ..................................... ACCACCGGGAGAGGAATAACTGGGGATGGCTACAAGTTGAA 136618 37 100.0 33 ..................................... TCGGAAACGATTCAATAAGGCGATGGGATATTC 136688 37 100.0 33 ..................................... ATCAAGGTAAGACGCTCGATCTCCCTAACGTAT 136758 37 100.0 37 ..................................... ACAATTGTCTTGGATACCGATGACGCTGGATTGATTC 136832 37 100.0 35 ..................................... CCATTCTGGAACGTAATACATTTTCCTATTACGAT 136904 37 100.0 34 ..................................... TACTACTAACAAGAGTGCGGCTAAGAATAAAATC 136975 37 100.0 40 ..................................... CTGACACGCGCTCAGTTTCCTCAACCACTGGCTTCATATT 137052 37 100.0 33 ..................................... TTTAACCTTAGAAGAAGAAAATAGCCTTGATAA 137122 37 100.0 36 ..................................... TCCCATTGCTCGGTAGCACCCTGGAATGCGACTTCT 137195 37 100.0 34 ..................................... CTAAATATGTTCCCCTCTTGAATAAATTGACTGC 137266 37 100.0 35 ..................................... TTTTATTGAAAATTACTACGAGGAAAAAAACTAAA 137338 37 100.0 42 ..................................... AACATCTGGTACTACATTACCAGTAACAGTATTACCAACAGA 137417 37 100.0 40 ..................................... TGCCAGCAAAAGATTGTCTATGCACATAAGCTCTAAATAG 137494 37 100.0 35 ..................................... TCCAAATACCAAGCTAATGGCTTCTGCTAAGGTTT 137566 37 100.0 39 ..................................... GATAAGTAGGCATTACTACTGGGAATTGTTCCACCACCA 137642 37 100.0 36 ..................................... AACCTAAAACTAAGCCCTCCGATGAGGGCTTAACCT 137715 37 100.0 35 ..................................... CCATTGACCACCAACTGGGGCAAAACCACTGGGTA 137787 37 100.0 36 ..................................... ATAAACCGCAGGATGATCTGTAGGGACTGCTTTTAA 137860 37 100.0 34 ..................................... AAGCAGTTTGGACAAGAACCCCGACAAGGTTATA 137931 37 100.0 35 ..................................... GCCACGGAGTCTAAAGCGCTACGGTTTCCCATAGA 138003 37 100.0 40 ..................................... AGTGGAATAACAACCACTGCAACCATGAAGCAGGTTGAGG 138080 37 100.0 36 ..................................... CCTCTACTTTCTCCCAATACTCCGTAGCCTCTCCAC 138153 37 100.0 46 ..................................... CGGTAGTCGATGCGCTAAAGGTTGTCCAGGCTGCCGTGCCGCTAGA 138236 37 100.0 35 ..................................... TACCAATCACCAGTAAAAGGCACTACCATATGGAA 138308 37 100.0 39 ..................................... ATATTATCCAGGCTCCTTTGGACTTGTGTTCAATCTCAG 138384 37 100.0 32 ..................................... CTAGCAGTGCAATCTCTGGTTTCAGTAAGAGC 138453 37 100.0 39 ..................................... CCATATTGCCTCATCCCGGCTCATCAGCACAAATGCTGA 138529 37 100.0 43 ..................................... TTACCCGTCCACCTGCCGTTTAGACGCGGGAAAAGTCTTTAAA 138609 37 100.0 37 ..................................... TTGACTGGACTCCGGCATTATCTGGCACACAGACGGG 138683 37 100.0 40 ..................................... CCCCGACTAGCGCTTAACACCAACCAGTCACGAATCGAGC 138760 37 100.0 39 ..................................... ATGACCCACAACCTGCGCGTGATCTCGCTCATACCATTG 138836 37 100.0 36 ..................................... CTGAAGAATTTATAGAAATTTTTACTCAAGAGCATG 138909 37 100.0 37 ..................................... AACGCTTAAGTGCTTAAATTCTAGTTTCTGTCTCATT 138983 37 100.0 40 ..................................... CCGATTAGGATTCACCGGGATTCCTGATAATCGGCAAGAA 139060 37 100.0 43 ..................................... GAGATAATGCCTCATCGTCTTTAAGTTACTCCATTGAAGTGAG 139140 37 100.0 35 ..................................... AACAGTAAAAGACTAAGCAATCTTTTCTACCAAAG 139212 37 100.0 37 ..................................... TACCTGCGGATTTCTCAACATCTAGAAATTCACCCAA 139286 37 100.0 42 ..................................... CTCTATCTTCTCTTGAAGGCGCGATCGCGGAGTTGCTGGGAA 139365 37 91.9 0 ...........................AC.......A | C,CC [139396,139398] ========== ====== ====== ====== ===================================== ============================================== ================== 44 37 99.8 37 ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Left flank : CCAGAAAAAGTATTTAGTCAAAGGACTGGTTCCTTTGCCAACAACTTGATCGACTGCTAGAGCGACGTTCTCATCTAACCAGAGAATTTTTAAAATGAACTTGGTCAATTACACCTCCCGGAAAAATCCGGCTATGACATTACTAAAGTTAGCGATGCTTGCGGCGGGCTACGCCGACGCTTATTTTAACGCAAACTCTGACCAATTGACCAATGAGAATTGTTGATGAATGATGGTTTATGGGTGATTTCAGTCTAGAATTTTTTTCCCGGATAGCGCGGGGGGGTGGGTGTTGAAAAACCTGTGACTCCAAAAAAGGCTGAAATCATTTTGTAGCAAGACTTTCAAGCTTTTTAAATCTTGAATCACCCGCGCACCTTATCCAGACTGGGTTTCAGCCATTTTCAATCTTGACACGATCCTGGAAATCGACTATGATTAGACCACTCGCGCAATCGAACCTTGAAAACCAAATACAGTCAACCTTTCCGGCTCCTGCT # Right flank : AGAATTAAATTATGGTATAAGAATATAAAAGTGTATTTTTTGGTAAGACGTTATGGGCAGTATATTTGAATATATTCAGAGCAATCCTCAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 67990-65079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000012.1 Anabaena catenula FACHB-362 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 67989 36 100.0 36 .................................... ATGCTGAACTTCATCGTTGGCAAACTACTGATCAAA 67917 36 100.0 31 .................................... ACGGAAATACAAACACATTCGGAATCTATTT 67850 36 100.0 43 .................................... TAGAATTAGTTCAAATCCAATTTGCTCTTTTGGTTTTTATCGT 67771 36 100.0 34 .................................... TGTTGCTGAAGGATTTTCCTTATCTCAAGCTAAA 67701 36 100.0 33 .................................... AAAAAGTTGAAAAAAAAGAAGAAGCCTCCATCC 67632 36 100.0 38 .................................... TAATGGAGATACTAACACATCTAACTCTAACTCTAACT 67558 36 100.0 37 .................................... GAAAAAAGCAAGTTATGAGCAATTGGAAGCCATAAAG 67485 36 100.0 39 .................................... ACAGAACACAATAAATAAAAATGAATGCAAAGGAGAATA 67410 36 100.0 34 .................................... GACATGAAAAGTATGTTCTTAAAAGTCACCTTAA 67340 36 100.0 42 .................................... CGTTTAGAAGTTTTCGGCGCAACCCATGAGCGCCCCTACAAC 67262 36 100.0 42 .................................... CTAACTTTACAAGTTCTGTTTTAAGTTCACTGGAACCTAAAC 67184 36 100.0 35 .................................... TTGAAAATTGCCCAACAGGTTCTTCCAAACCTTGC 67113 36 100.0 41 .................................... TGACAGAAAATTCCCCGTTGGAACTTCTGAAGCTAATATTC 67036 36 100.0 41 .................................... GTGAACAACACAACAACAGAAGAAAAAAGAAAAGCTTTAGC 66959 36 100.0 41 .................................... TTAAAGGTTTTGGAATCATTAGTCCAAAGCAATACACGAAA 66882 36 100.0 35 .................................... TGTAAATTTATTGTGGAATTTTCTTAATGGAAAAT 66811 36 100.0 38 .................................... TCAGGGTTTCTTTCTGGTATAAAAGATGGAACAATTTT 66737 36 100.0 45 .................................... GGTTCATTAAATGCGTTAACTTGCCCTAATGGGCTAAGTCTAGTC 66656 36 100.0 35 .................................... AAGGTTCTCGAAACCCTTGTTTAAGAACGCCTAAA 66585 36 100.0 38 .................................... ATGTTCATTTACGCCCAATTTTTTTGAGGTAACTCAAA 66511 36 100.0 37 .................................... GCTCTGTTAGCCACCAATTAGGAAACGGAAACACATC 66438 36 100.0 38 .................................... TTGCGCTGAAAAATAGCAGTGGCAGTGGAAATACTTTC 66364 36 100.0 38 .................................... TTGCTGGTATGGGAGGTAGCAAAAATGCTGCCCCCACT 66290 36 100.0 41 .................................... CTGGTTCTGGATCATCTGGTTCTGGATCATCTGGTTCTGGA 66213 36 100.0 38 .................................... ATTCAATAATTCTTTTGCTGACAAAATTAATACCTTTC 66139 36 100.0 39 .................................... CAGAGTACACCGTGGCAGTTAAAAACTTCGGACAATTTT 66064 36 100.0 41 .................................... TTGACCCAGGTGACCTGCAAATATCCGAGTTACAATACAAT 65987 36 100.0 41 .................................... TATCAGGAAGAAAAAAGACCTTAAATAAGTTAGCTGCTGCT 65910 36 100.0 36 .................................... TCGTCATTTCAGTGTGCTAAGGGAAAATATGTCAAC 65838 36 97.2 38 ..................................A. GTAAAATGCCCAGTTGGTGCTAAAGCTCAGAACTTTTT 65764 36 100.0 36 .................................... TCAAACAGATTTTGAGCTTAAACCGAGAAATCGCCA 65692 36 100.0 34 .................................... TTGTTTCGATACAAAGCGCATAGGTGAACAAAGT 65622 36 100.0 35 .................................... CAGGGGTTAGTAACGCGCAAATCCTTACTGAAATT 65551 36 100.0 39 .................................... AAAAGATCCGCAGTTTGGCTCAGTAAGTCTTGGCGTTTT 65476 36 100.0 39 .................................... AAAGCCGCAGCCCACTGTGGCACCAAGTCCAAAACCAAC 65401 36 100.0 31 .................................... GTTACAATTTGGATAAAAGTCGTGACTAAAC 65334 36 100.0 35 .................................... GTGTTCATACAACAATAATGCTGGTGGAACTGGAA 65263 36 100.0 40 .................................... GAGATATCAGGAGTTGCTTTCTCGGAAAAAACAATACAAA 65187 36 100.0 37 .................................... AACTGGCGACCAAAACACCTACATCGCTCCAATAAAC 65114 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 40 36 99.9 38 GTTTCCAATTATTCCGAATTAACCCAATCGGTGGGG # Left flank : AAAGTTTTTCATGATTTTTCGTAAATCAATAGCTATTTTAAAAAATAATAAGCCTTCATATTGATGAGGGCTTTTTTGTTTCCAATTATTCCCAATTAATCCAAAGGTTGGTTTTTTTTATCAAATTCTACTTCTGTAAGTCCTCGAAAGTCTATTATATTAATGCCGCCTTTATTATTTGTTACTATAGAACCAACTGTAACAACTTCTTCTTGGGTAGATTTTAAGCTATTAAAAACTAAGTATTTCGCAACATAGAAGGGAGTTTTCAGGAAACAATTGTTATCCACAAAACTATTGTGCTTTACGTGATTACTCTTCCAGGTAATGCTAACTGTGGAAAAATTGTCTTTGGTGCAGTATATTCGCACTTCTTGAGTTTTTTCTTCTTCTAGTAATGCTGAACAAGAACAAGATAAATAAATAACAGCAAAAAAGAAAATTAAACGCATCATTTTTTGATTTTCTAATTACAGTTCAGTTTACTAATTTCTAAATAA # Right flank : AGTTCGTCTAGCAGCCCTTACCCAGTAAGAGTTTCAGACCGCAAATCGACACACCTCTAAAAAAGATTGTACACCCAGCCGAAAAATTAATCAAACACATACCTCAAACCCTTACACAGTAAGCAATCGACACAGGTCAACGAAAGAATAGGGGTTTGGGCGATTTGGCGAGGTGTGTCGATAGTCATGATACAAAAACCTCCTAACATAGCCTCAAACCTAGATACAGAAAGACTTTGATAGAATCTTAGTTTGACATAATATCTTCTTGGTCATTCGCACTGGCAATGTAAAATTATCATTTATACCCAATTAAGATTAAACACATACCTCAAATATTTAACTTGATTTGCATATTTAAATAAATTAGTAAAATCACTATAAAATTATACCTTATATGTCAACGTCCCGACGCAAAACTCAACAGGCAGCTAAAACCGACTCCAAAACAATCATCGCTCATTTTCTCATCGGTACACCAGGAAGCGGTAAATCTACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATTATTCCGAATTAACCCAATCGGTGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 78411-81890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000012.1 Anabaena catenula FACHB-362 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 78411 37 100.0 38 ..................................... TACGCAATGCGGCTTCAATGTCTGCCGCCCTGCAAAGT 78486 37 100.0 37 ..................................... TTGGATATCTGCAACAAACAGAGGAATGATCACACCG 78560 37 100.0 42 ..................................... GATTACCTTTATCGCCCCACGACTTGGTCATTGCTTCTGCTT 78639 37 100.0 37 ..................................... ATTTTCCCTCCGATGGCAGAATGATTATTCTGCCTGG 78713 37 100.0 34 ..................................... CGGCTGATATCTTGCCCGTGATATTTAAAGCAAA 78784 37 100.0 43 ..................................... CGATGATGTAATCAGCTAGGGCTAATAGTTGAGTTTTGGTCAA 78864 37 100.0 39 ..................................... CCGGGGAAAGATGGGAGGGACTTAGAAGTGGATGCTGAA 78940 37 100.0 41 ..................................... CGACATTAATCAAACTGGCCAACAAACATAAAATTCCCAAT 79018 37 100.0 37 ..................................... TTGTAGCGCTATTTCAGTATTAAGCGACGGGAAAATA 79092 37 100.0 37 ..................................... CAAGGAATGGAAGTTCTGCGTAGGGGTTCCCATGTAG 79166 37 100.0 33 ..................................... TGCATTGAATACGCCGCAGAAAACTTCGTTCAC 79236 37 100.0 43 ..................................... ATACTTACGCTAACCATAAGCTTTGTAGGAATAATGGGATTGG 79316 37 100.0 39 ..................................... CTCTATAGGCATCTACCCATCCCTTCCTACTGTCGCATT 79392 37 100.0 38 ..................................... ACATTGTCGATGCCATTAAGAACAATTATCTAGAAAGT 79467 37 100.0 35 ..................................... TCCGCATCGGAATTTCTTTTACCCACAAGGGCTAA 79539 37 100.0 37 ..................................... AAAAAATTAGGCTCGCCCTTGACCTGCACAGATGCAA 79613 37 100.0 37 ..................................... CCCATCCCTCTGGGACTTTCTTTAAGTCTGTGACGCA 79687 37 100.0 39 ..................................... GGACTATAAATCTGATTGGGCGGTAGCAGGCAATGAATA 79763 37 100.0 42 ..................................... AAATTTTTGATGTATCTGCGATTAGCTTGGGAAGCTAATCTT 79842 37 100.0 38 ..................................... TAGTGATTTGCGCGATCGCATGATTAGACCATTCTCTA 79917 37 100.0 34 ..................................... AATAGGCTGAACTTCTCCAGATACTTTCTGCTCC 79988 37 100.0 38 ..................................... GGCGATCGCTTGTGGGGAGAGCGATAACTCAACGGTCT 80063 37 100.0 36 ..................................... AGCACCTCACTTAACAATGCTTCTTTTATTCTTTGC 80136 37 100.0 34 ..................................... GATTCAGCCAGTGCTTCTTGTAAACCAGCTTTTA 80207 37 100.0 40 ..................................... GAGATTCTTGCATTTTATGTATAACTTCCTGGCAAAGCCA 80284 37 100.0 36 ..................................... TTTCTCTTATCTAAATCTGCACGGTATTCAACTGAA 80357 37 100.0 38 ..................................... GGGGGGGAGGAACAGGTGCAGGAGTCGCAGGTGCTGGT 80432 37 100.0 39 ..................................... TTCTCACCTTTAAAATAGGAAACTTTCCCAGATTCGGCA 80508 37 100.0 39 ..................................... TTCGCTAATTCGGTTTGTGTCATCAACGCACTCTCTCTC 80584 37 100.0 34 ..................................... CTGTCATTTTCCTTATTGGCTTGTCATCATCAGT 80655 37 100.0 35 ..................................... AACACCAGCACCAGCACTACCGAAAGTAAAAGCAG 80727 37 100.0 40 ..................................... AGCATTTTGTAACTGATTGAAGAGGTAGCCAGTGTCACGG 80804 37 100.0 40 ..................................... GCAAACAATTTCTTCCCAGAAATTTTTAAAGCAATTATCA 80881 37 100.0 42 ..................................... TTACAAAAGGGGCTATCGTCAATAACTCGCTAATCGTATTAG 80960 37 100.0 35 ..................................... GTGCAATATCTTCTTGTACTGCTAAATCTGCGTTA 81032 37 100.0 34 ..................................... GAGATAATAGAAAGCAAGCGAAAGCAGGTATTAA 81103 37 100.0 40 ..................................... GTCTCTGTATGGAACTATCTATAACAGATGTTTTATTAAT 81180 37 100.0 43 ..................................... TTGCTTATCATAGTATTTTGATTTACGACAATCATGGGCAAAA 81260 37 100.0 42 ..................................... TTGCTTATCAGCCATAAACCAGCCAATTGCACTACTTGAAAT 81339 37 100.0 34 ..................................... ATTTCATCAAGAAATAGATTTGCTTCATTTGAAG 81410 37 100.0 35 ..................................... TAACGTCTTGGTAGAAAACCGTGTAATACAGACAA 81482 37 100.0 36 ..................................... TAATGCCAGTAATTTTTGTCTCGTATATCTCTACAG 81555 37 100.0 42 ..................................... TCTTGCATTATGTGATTAGCAATATCATAACCACAACCGAAG 81634 37 100.0 34 ..................................... CTCTGTTGTACATAACTATCTCCAATTAGTGTGA 81705 37 100.0 35 ..................................... ATCTATTATGAGATTAACAAATGGAATCTTATGTA 81777 37 100.0 40 ..................................... AATGTATCAGTTGTAATTGATTTAGGTGTAGATAAACAAG 81854 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 47 37 100.0 38 GTCTCCACTAACCATGTGGGGACGCATAATTGGAAAC # Left flank : CAGTATATTAAAAACTGTAATGTTAAAAATGCCTATGAACAATATGTAAGACAAAGATTTTTGCATATTATGAAATTGCTAGAAATGCCTTTTGTGACTGGTAAATTGCAGCAAAAGCTCAGTAAAATAGCTGATAGTTTAGACGAACAAAGCTGAGTTACACAATGATATACTACGCGATTGATCGCTCATCATATTCCACTATATTTTTATGCAGCGCTAACGACATCACTTAAAACACTACCTAAAACTGCGCGACCCAGGGGGTGTATTTATCGAACGCTTGTTATATAACCTCTAAAGGCTTATCAGCTATGGCTTTGGAGGTCTTTAGGAAAAAAGAGGCTCGCGCAAAGTCTGTAATCTATGCCAGCAAAGGGTTTGAGGCATTTTTCATTAAGGGAGGACTTGACAAGCGATCGCTCAAACGGTACTTTTAAGTTTCATCCGCGCAAATGGGTGTCCAAAGCCTTGTATATCAAGTCTTACCGACACCCGCA # Right flank : CTTCTTCCAAAGACAGACGAGGTCTACCGTTATATTCAAGATACCCCACCGATTGGGTTAATTCGGAATAATTGGAAACTCCTTGAGGGTTTGTCAATGTATCTGAAAAAGTTAATAAATCCCCACCGATTGGGTTAAATCGGAATTATTGGAAACCAAAAGATAGTACCTGAAACTGTGTTGATTATTGAAAGAACGTAGTTTCAGGTATTTTCAATTTTTGATAAAAATCAAATATTAATGAAAACAAGCGATCGCCATACCGTAAACTTCCTGAAATATTAACAACAGCGATCGCCACCATTGGAAAATCGCGTTTCCGAGCATGGGTTTTAATAAAACATATAAAAGTCCAAACCCAAACACAAAGCAGTTGGGAAACACCTATGCTCACATCTCGTCGTGTCTTGATTTTTGCAGACAGCGATAATACCTACCTATATGTGTAGCCGTAAAAAACACATTTATCGTAGGGGTTTAGCACTGCGCTTTACCCCTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACCATGTGGGGACGCATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 100527-96979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000002.1 Anabaena catenula FACHB-362 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 100526 37 100.0 33 ..................................... ATAGTATTAAGACAGATGATGTTATTAAGGCTA 100456 37 100.0 43 ..................................... ATATAAGTAATGCTGGGGAGACTGGAATTAATGATAGTCCCGA 100376 37 100.0 40 ..................................... GAGGCAGAATTCTATTTACACAGGATTCAGGCGCTACCAT 100299 37 100.0 34 ..................................... ATGGGACTGGAAAAGCGGACGCGATGGGTTCAGT 100228 37 100.0 43 ..................................... TGGGTATCAGTGAGCGTTAGGGACAAGGACGCACTACTATAAA 100148 37 100.0 35 ..................................... ACCCCATACCCCAAGCATCACCAAGCAATTGCAAA 100076 37 100.0 38 ..................................... AAAAGATTGGGCTGAGGTGATTTATGAAAAAATTACGG 100001 37 100.0 40 ..................................... ATGATGATAACCTATCTTCCAGGCATTCTTGTGCTGTCCA 99924 37 100.0 37 ..................................... TAAGAAACAGTTTTGTTATCGTCAGGCTCTTTATCCT 99850 37 100.0 33 ..................................... TAATTAATCTAATCCCTTCTAGCGCCATTCCCC 99780 37 100.0 41 ..................................... ACGGGATTCCGTGCGAGGTTTTGCAAGCTAATAAAATTGGC 99702 37 100.0 35 ..................................... ACGACAGCCACCAAGAATCCTACTAAGCCAGTAGC 99630 37 100.0 34 ..................................... ATGGCAGAATCAACGGAAGCTTTAGCCGTTACAA 99559 37 100.0 36 ..................................... TCTTCTACCTTAAGGAAGAATACCTGCCCAAATCAT 99486 37 100.0 35 ..................................... ACTACGACGAAGATCAAGAATACTGGTTAGCCCGT 99414 37 100.0 40 ..................................... AAATTTCTATAACCGTCTGATTCAGTAGGACTAGATAATG 99337 37 100.0 42 ..................................... ATCACACATCTAACGGTCTATGTAGAGTTCTGGCAGTCCATA 99258 37 100.0 41 ..................................... CAACCGATTGGGAACCCCATCATACACTCATACAGTTCAGG 99180 37 100.0 39 ..................................... TCAATAAATCCATCAGATTTAATTAAATTTGCATTAAAT 99104 37 100.0 39 ..................................... AGTTATGCGATAAAGAAATTGATTTATAAATATAGTTGC 99028 37 100.0 35 ..................................... GTATAAGCATTACATCATCAGCAGAAACTTTACAG 98956 37 100.0 34 ..................................... CTTTACCGCTGAGTTGATTCAAATAATACCTGAT 98885 37 100.0 36 ..................................... ATTAAAGTAAGCCCTTGACTAATCACCGCGCTGCAA 98812 37 100.0 42 ..................................... GAAAGTTTAGCAGATCATTACTTATTATTGGCTGAAGAAAAA 98733 37 100.0 36 ..................................... TCTTCTGTAGTGCTAGTAGCTTCAGTAGAGTTGGCG 98660 37 100.0 37 ..................................... TGATACATTTAACCAAATGGCTTCAGTAGTTTCCACT 98586 37 100.0 37 ..................................... AAAAGCCAGCTTTTTGTTTTTCCAATCATTGTCTGAT 98512 37 100.0 35 ..................................... TTTTATCTGCGTTTGCACTTTCACGGACATCATTA 98440 37 100.0 35 ..................................... AATTAATCTAAGATGCCACCCTTATGATTATTATA 98368 37 100.0 38 ..................................... AAACAGGCGATGAAGACTGTCACTCAATTGGTGGTTGA 98293 37 100.0 36 ..................................... GATTGACATCCCCCTCACAAAGCTATCAACTACGTT 98220 37 100.0 39 ..................................... AAGAAGATGGGGCTGATAAAATGCAATCATCCTGAGATT 98144 37 100.0 37 ..................................... TTCTATCTTTTGTATTATGTTTGGTCTGTGTATCGGT 98070 37 100.0 41 ..................................... TGAGGATAGCTTCTTCCTTCTCACCTTCCTTTAGCTTGAAT 97992 37 100.0 35 ..................................... TAGATAAACTTTTGGCTTATCTTTGACCATTACTG 97920 37 100.0 39 ..................................... GGTGGGAATCAATATCTTTCTCCTTACACTAACCCAGAA 97844 37 100.0 40 ..................................... GCTAAAGTTCAAGAGGACAGGTGGTGTGTTTGCTTCTTTT 97767 37 100.0 41 ..................................... AAAGTATTTGGCAAGCATCTGATAGCAATGATACTCAGAGA 97689 37 100.0 45 ..................................... CAAGCCGATTGAAACTAGAGCGGGGGCGGCTAATTATAAAGCTGG 97607 37 100.0 37 ..................................... AAAAACTGTTTGGAAATTCAACCTGGTGATATCATGT 97533 37 100.0 36 ..................................... CAGGAGGATATGGTAGCCAGTGAGATACAAGCTCAC 97460 37 100.0 39 ..................................... GGCTTCTCTACTTTCACCAAGGAATTAAGGTCAAGCTGT 97384 37 100.0 36 ..................................... TGCATGGGAAGAATGGGCGATAGGAAAAGATTTGGA 97311 37 100.0 42 ..................................... CAAACAGCAGATATCCAGAATACATTCTGCGAAACAGATAAA 97232 37 100.0 36 ..................................... AAAACCATTTCACGAGAATTGCTAGTTTAACACAAA 97159 37 100.0 35 ..................................... ATCTATAGTGACTCTGGTTTGTGCAGCGTAATTTG 97087 37 100.0 35 ..................................... GTTTTATGAAAAATCCCCTGCTTAGGGGGGGACAA 97015 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 48 37 100.0 38 ATTGCAATTTTCATTACTCCCTATTAGGGATTGAAAC # Left flank : TACACCCCACATCCCACACGAATCCAGTATATATTGATGAGGGAGTGGTACATTATGGTGTTCCTAATATGCCAGGGGCAGTACCTTGGACAGCAACCCAAGCACTGAACAACAGTACTTTACCTTATGTTGTGCAGTTGGCTAATTTGGGAATTAAGGCTTTGGATGTGAATCCTGCTTTGGCTAAGGGTTTGAATGTGCAGAATGGTCGTTTGGTACATCCGGCTGTACAAGAGGTTTTCCCTGATTTGGTAAGTTAAGAATCGGCTTTTTGGCGCGGATGGGTGGGTGTAAAATTTAGATGTTGCAAAAAAATAGCTGTATCTCTTGATGGGCTTGGCTTTGCGGCTATTAATGTTGATGAACCATCCGCGCACCTTACGGTGACTGGGTTTCAGCGTTTTTTGTTCTTGACACAATTTCTGGAATGGACTATGATGATCCTATTCGCGCAATCGAACCTTGAAAACCAAATACACAAAGGCTTTCAGCCTCCCGCT # Right flank : AGGCTGCTTTGTGGCATTTGCGCGAAAAAGTCAGTCTAGGAGACTGGCGCGTAAATAATCTTAATGCTATTCTGGAAGCGTCAAGCACTTAAGAAGGGTAGTCATGAGCAGCAAAGAAACAATTAATGTAAGGGTTGAGCTAGGAACTAGGCTTTGGTGGCAACAAGAAGCCGTTAAAAATGGTTTTATATATGGTAATGGAGGGGCTACTGGAGAATTTTTGGATGCGATCGCTCAAGGTGAGTACGTGATTATTAAGCGGGAAGCTTGGCAGCAATTATTCTCTAAAACTGCTTGACGGTTTACAATGTTTAAGCCATAATTATAAGTATGAGGAGCAAAAAACTACATCCTCATCGGGAGGTGAAATCAAAATAACTCAATCCGATAAAAACGGAAATGGAAATGGAAATCAAAAATCCAATTCCGATGATATCCGGGTTTACGAATCAGTGTATTTAGCTGAAGATGAAGCCCAAGAAGAAACCGTCGGATGGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTTCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 154599-155960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000003.1 Anabaena catenula FACHB-362 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 154599 23 100.0 50 ....................... ACAATTAGATGCCTATGGAATTATTGAAAGGGCTATGTTTCCACATAACT 154672 23 100.0 54 ....................... TTTATACTGACTATGCTGCATTCAGGATGTGTTTGGAGTTGTTTCCACATAACT 154749 23 100.0 52 ....................... TACAATTAGTGGAAGTAATCCGGCAATGGGATTAGCAAGTTTCCACATAACT 154824 23 100.0 51 ....................... GCTCCTACCTTACGAGCTAGACCTAAAGATAAGTCAGGTTTCCACATAACT 154898 23 100.0 49 ....................... AGCTAACTCCCACGATTGGATCTAAATCTCTTGATGTTTCCACATAACT 154970 23 100.0 51 ....................... TTTATTGACAACTTGGAACCACCAGAACTGACAGAAAGTTTCCACATAACT 155044 23 100.0 52 ....................... TTCCATTGAATCTTTCCTTTAACCAATCAAAACTGAAAGTTTCCACATAACT 155119 23 100.0 48 ....................... ACTGTTTGCTCGACCCTGACCAGTTGATCTGATTGTTTCCACATAACT 155190 23 100.0 50 ....................... CATCCAAGGCATCATGAGTACAAGGTAAATCATTTTGTTTCCACATAACT 155263 23 100.0 50 ....................... TTTACTTTTTCAGGTGCAGATCAGCGTAATCCCTTTGTTTCCACATAACT 155336 23 100.0 49 ....................... TAGAATTGTTGGAGTAGCAGTTGAAGTACTAATAGGTTTCCACATAACT 155408 23 100.0 52 ....................... CGGCTACAGCTTCGGCAACGCTAGAAACAGCAACGGTAGTTTCCACATAACT 155483 23 100.0 49 ....................... ATCTCTAATACCTCCTGCTGTATTATATTCAACTCGTTTCCACATAACT 155555 23 100.0 52 ....................... TGTCCTTGGATATCTAGCACTTGTTCTACTACCTTCCTGTTTCCACATAACT 155630 23 100.0 50 ....................... AAAATTTCGTAAGATTGAATATAATATTTGCTTGATGTTTCCACATAACT 155703 23 100.0 54 ....................... AAATTGATGTAATAAAGTGTGCGAGAATCAAGCATTTTTGGTTTCCACATAACT 155780 23 100.0 59 ....................... ATTGCAAAGGGAACGATAACGATGCCAACAGCAGTATCTGCAATAGTTTCCACATAACT 155862 23 100.0 53 ....................... ATTGCAATGTTCTTGTAAAGATTCTTTTTGCCCCTCCAAGTTTCCACATAAAT 155938 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================================== ================== 19 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTATTACCTTATGATTTAAGACAAAGAATTGCGGCTGATATTACCAAAGAAATAGGTTTTTATCATATATAATTAGTCAATAATGAATGCTTCACTATTTGTAAACAAATAAATCTTGACAAGTAACTTGCTAAATTTTACTTTTACAGCGATTTTCGGGTAAATGAACCACATTTTTTTGTCTCACGCAGAGGCGCAGAGGCGCAAAGAGGAATCAAGAGTCAAGAGGAATCAAGAGTCAAGAGGAATCAAGAGTGTGGTCTAATTACATGAAAAATGCTGTAATATAAGGATAAATTTGGCAGACCGAAGCGAGGTCAAAAACCCCAGGGATTCGCCAAATCGCCAGAACCTAGATAATTAAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCAAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCACTCCTGGATTCCGCCCGCAGATTATGTTTCAGATGACGGGGTTTCCACATAACT # Right flank : CAGAGTAAAATACTGAGCATAAGATCATGTAGCATCAAAAAAAATGCCAAGAGCAGCTACATCTAGCAAACGCAAAACCCCATCAAAAAATACCCCTTTGGTATGGGCTGATGATACTGAATTAGTTGGTTTAGTCTTTGACCTGGAAGTCACCAATTCCACATTCCTATACTCGCAATATACCATTGGACTTCATGCTTGGTTTCTAGACCAGGTGCGGCAAATTAACCCAACCCTTTCAGCATATCTGCATGATGGCGAATCAGAAAAACCTTTTAACATTTCTGCCCTCGAAGGTCAACTACTGCCCACCGGAAAACAACTACAACTACAAGCAAATCATATATATCGTTGGCAGATTAACGCCATTTCTCAACCATTAGTTCAGTTCTTGAGTCAGTGGTTAAACCAACCTCCAACTACTTTGAAATTAAGGGATGCTTCCTTACAAGTAAAACAGATAAGTATTGTCAATTCACCAACTACTTATAGCCAACTAC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 112034-111176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000005.1 Anabaena catenula FACHB-362 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 112033 36 100.0 38 .................................... GCTTCATTTATATTCAAACGTATTTTAGAAAGTGTATA 111959 36 100.0 40 .................................... ATAAATGGGATTAATTTGACCAATAAGAACAAAATTGAAT 111883 36 100.0 36 .................................... CTTCAGCTTGCTTTTGCTGTGACATTTTTTCTTTAA 111811 36 100.0 40 .................................... CTCACTATTTGCGGTGATTGGAGCAACGTAGGTGTTTTGA 111735 36 100.0 36 .................................... ATTTTCAGAACCATTGCTGAGGGTGTCACCATTTAC 111663 36 100.0 38 .................................... GATTATGGCAAGATCCTTAGGTGAGATCTTGGAAAAAT 111589 36 100.0 43 .................................... GCAGTTCCTCCTCCACTACCTCCACTCAGGGAAACAAACTCTC 111510 36 100.0 38 .................................... ACCAGAAGAAACATTGATATTTGTGGCGGGGGCTACTG 111436 36 100.0 40 .................................... TTTTTGCCGCTTCTCTAAATGCTTTGGCAAGGTTCTCGGC 111360 36 97.2 39 ...........A........................ ACAAGGGCTGCATTGTGTATCATAATTGAATTTGGGTTA 111285 36 94.4 38 ....C......A........................ GTATCTGTTAGTCTCTGTCCATTCTTTATTTGGATCTA 111211 36 91.7 0 ....C......A...................A.... | ========== ====== ====== ====== ==================================== =========================================== ================== 12 36 98.6 39 CTTTACAAACCCACTTCCCCGCAAGGGGATGGAAAC # Left flank : AGAAGGTTTGATAACATATAAATATCAAATGTCTGGTGATGGTCATATTGTATCTAGTTACACGGGTGCAAATGCTAAATCATTTACACATCGAGATTTGGATTAACGAAGGCAGGAGGCCGTTTTTGTAACGGGGATTTATGCCCCTTACAAAAACTTTTCGCCTTAAGCAGAAGCAATTTTAGATTTTTCTAGTCAAGCTGATGTAATTCGCTGGTTAGAAAATTTCGATAAAAGTGGCTCGTAATCTGTAAAAAACTTGACATTTATGGTTATTTGCTGTACATATAGAAAATGTGTCGAGGTCATCGACACCACTCGTCAGAACCTTGAAAACCGCATAACTTCGTTGATTGGTGTCGATTGCTTTTGTAGTAAGGGTTTCGACTGTTGAAATAGGCAGTTTTTTATCAATAAGCACTACTTTTTTGTCAATAAAAAAAGTGGTGTCGATTTGGGTATCTGAAACTCTTGCTCTGTAAGGTTTATAGAAGTGAACT # Right flank : AGTAATAAATTCATTTTCTAGCGCGAACAAAAAAGGTTGTAGTATCTTCCCAAACTCCTTGATCAGTTACTCGTTTTTCTATTTCTGATTTGTAATCAACTTGTAACTGATTTAATTGTTCGGGTGATATTTCTAGTAACAGTGGATTTCCTTTAAATATTAAATTTAAAAATTGACTAGATAATTCCTGATTACTGAAATTGCGATATCTTCCGCGTGGTTCAATTTTAATCTCAATATCTTTAAAACCTGCCTGTTTTAGGAATTTATGACACTTTTCAGAACTACCAAGTGGTGCGAGAATATGTGTCAAGGGTATGCCGAAAAATTTTGTACAGATATTCACATAAACAGATGCCATATAGGCAGTTTCAGGAGGACAAGTAAACGCAACAAATCCTCCTGGTTTTAGGAAGCGATGCCACTTTTTTAAACTGGCAAGAATATTAGCAAAATATACGATTGCTGAACAACAAAAGATGACATCAAAACTACCATCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 170295-168242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000006.1 Anabaena catenula FACHB-362 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 170294 37 100.0 39 ..................................... TGGCTAAATTCTCAGACATAATTAACAAGATATGGCAGT 170218 37 100.0 40 ..................................... GTAAATTGCCCCAGCATACACCAAAATATATTTGAATCAG 170141 37 100.0 32 ..................................... GTTTTGGGTTGCTACTTAAGTGTAGTTTTTCT 170072 37 100.0 40 ..................................... CCCTTAAAATCGTATGCTTCCTTAGAGTTGCCGACATTAG 169995 37 100.0 41 ..................................... GTCAATAGTCGTTGTTACAGCATTAATACCAGGTATTGCAA 169917 37 100.0 33 ..................................... TTCCCTCTGTATTTCGACGTATACGCCACTCAT 169847 37 100.0 40 ..................................... ACAGGATGCAGCTTAGAGGATACGGGTTTAATCGCCTCTG 169770 37 100.0 41 ..................................... ATACTTTGAACAGAAATGCAATTATAGGTATATTTATGCGG 169692 37 100.0 39 ..................................... GATAACTATATTGCAACTACTAAGAGGTAACAATGCCGG 169616 37 100.0 38 ..................................... TATCGATGATCCTGCATACAACATTGGTGCATATCGGC 169541 37 100.0 38 ..................................... CGGCATACTTTGGAGCGTAAAGCACTAATTCATTTAAT 169466 37 100.0 35 ..................................... AATTTACCCTCTTACCTTTGAAAGACGAGACTATT 169394 37 100.0 37 ..................................... GACTGGATATTTTGGAACAAATTTTATTTATTGGTAA 169320 37 100.0 34 ..................................... CAGGCGTGGGAAATGCCAAACCTGGGGAAGTTAA 169249 37 100.0 37 ..................................... TCTCGCTTTTTCTTTTCATCCTCACTATCAGGCGGGG 169175 37 100.0 37 ..................................... GCAATAGATGCAACTTTGAACCACTCTTTGACTGTTT 169101 37 100.0 42 ..................................... CCTCAGTTGCACCACCGGCGATAGATGCAAAAATGCGATGGA 169022 37 100.0 37 ..................................... CCCAAGCCTTAACCACCACAGCCAACCGATCAGCCTG 168948 37 100.0 39 ..................................... CAAACGCCACACCCCTACTAGCCTTGCAAATCAAGCCTT 168872 37 100.0 42 ..................................... CTGCTGGGAACTTCCTTGATAATCCTCAGCCAATTGATCCGA 168793 37 100.0 32 ..................................... ACTTCACCTTTTGTAGTTGTGGCTAAACTACC 168724 37 100.0 36 ..................................... TATGTGCCAAGCATTAATCATAGAAAATGAGTATAG 168651 37 100.0 36 ..................................... ATTTTGCGTAAGTATTTATTTTATACTTTTAGAATT 168578 37 100.0 34 ..................................... AAAACGTATCAGACAAGGAAAGCGCTATTTATAA 168507 37 100.0 35 ..................................... TGGAGTATTCCAGATGGAAGGTGGTGTACCAAGTA 168435 37 100.0 40 ..................................... CGGCTACTTTTTTACCCACTGATGCGGGATAACCTTTAGA 168358 37 100.0 43 ..................................... CTGCCGGAGAGAATCTAGGAACAGCATGACCATTAGCCCAAGC 168278 37 86.5 0 .............C..................TTCT. | ========== ====== ====== ====== ===================================== =========================================== ================== 28 37 99.5 38 ATTGCAATTTCACATAATCCCTATTAGGGATTGAAAC # Left flank : GATAATGTAGCGCGGAATGAAAGTGATGTTAATTTCCGTAACCAGTTATTTGTGGCTTTAACGAGGGCGCGAGGTTGGGCGAATCTCAGCGGTGTTGGTAGTTATCCTCTGTATGATGAAATGCGAAAGGTAATTGCTAGTGGGGAAAGTTTTACTTTTACTTACAAGCGTCCACCGAAAAGGGATATTGGGGATGGTGATTAGGTTCAAATTTGGTAAAGTAAAAAAATTAGGTGGTAAAAAACCACGAAATAAAACGATTTTCTTCCCCTAATGCGCGAGGGGGTGGGTGTAAAAAATCCGATTTCTCAAAAAATGGCTGAAATCAAATCTAGATAAGGCTTTGATGGATTTTCCTGATCTACACCTCCGCGCACCTTACACAGCAAGGTTTTCAGCGTTTTTCACTCTTGACACTTTTTCTGGAATGGACTATTATGATCTTGACCGCGCAATTGAACCTTGAAAACTACATATATATAGGCTTTCAGACTGCCGCT # Right flank : GTTCCCATACTCTGTATGGGAATGAATTTTAGAAGGCTCTGCCTTCTTTGTAAAGTGGAGGCAGAGCCTCCTAATGGCATTCCCAGTCTGAGACTGGGAACGAGATAACCTACATTTTGCTATAAATAAAAACCGGAACTCTTTTATAAGCAGGTGTCCCACTTTGCGGATCAATTTCCGCTTTAAATAAAATATTAGTTTCAGGATAAAACATAAAAGCTACACCTTCACGAATTCCCCCACAAATAATTTCAATATTGTTTAATTCTCCCGCATTCCCTTTAACTGTAATTCGTTGATGTTCCTGAAATCCTGCTTTTTTGACATCCAAACTATTCATTAAAATACAATAACGATGGGGCATATTTCGATATTTATCTTCACTGCGATAAACTACAGTATTATGTTGCCCATAACTGCGTCCTGTTCCCAATATGACTACAATTCCTGACTGATTTTCTGAAACTCCAAAATCTGATTTATTCGGTAAAGATAATTGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 2492-2903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000062.1 Anabaena catenula FACHB-362 contig62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2492 36 97.2 37 ...................................C ATCAATGAAAGGCTGAACTCGTTCTGAGTGGGCATTG 2565 36 100.0 37 .................................... TTTATTATACTTTCAGGCATCAAAGCAATATCTTTGA 2638 36 100.0 41 .................................... TGCGGGTGATGGGTTGATTTTGAACAGGAACTGAAACAGAA 2715 36 100.0 40 .................................... CCAAAGCCCATAAGGGAGATGCTGTCACAATACTTTCTGA 2791 36 100.0 41 .................................... TCTGAACTCTTTGGAATTAGAATCGTTTTGCAGAGTATCAC 2868 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 99.1 39 CCCACCGATTGGGTTAATTCGGAATAATTGGAAACT # Left flank : ATTTACCGCTTCCTGGTGTCCCGATGAGAAAATGAGCGATGATTGTTTTGGAGTCGGTTTTAGCTGCCTGTTGAGTTTTGCGTCGGGACGTTGACATATAAGGTATGATTTTATAGTTATTTTACTAATTTATTTAAATATGCAAATCAAGTTAAATATTTGAGGTATGTGTTTAATCTTAGTTGGGTATAAATGATAATTTTACATTGCTAGTGCGAATGACCAAGAAGATATTTTGTCAAACTAAGTTTCTATCAAAATCTTTCTGTGTCTAGGTTTTAAGCTATTTTAGGAGATTTTTGTAACATCACTATCGACACCAGTCAGAGAATTACTCAAATCCCTATTCTTTCGTTGAGTGGTGTCGATGGCTTGTTGTGTAAGGGTTTAAGGTATGTGTTTGATTAATTTTCCAGATGGATTTATAATGTTTTTTATAGTAGTGTCGATTTGCGGTCTAAAACCCTTATTGGGTGAGGGCTGCTAGACGAACCTTGGAA # Right flank : TTGTTTGGAAATTAGTAAATTGAATTGTAATTAGAAAATCAAAAAATGATTCGTTTAATTTTTGTTTTTGCTGTTATTTATTTATCTTTTTCTTGTTCAGCATTACTAGAAGAGGAAAAAACTCAAGAAGTGCGACTATACTGCACTAAAGACACTTTTTCCACAATTAGCATTACATGGAAGAGTAATCACGTAAAGCACAATCGTTTTGTGAACAACAATTGTTTCCTGAAAACTCCCGTCTATGTTGCGAGATACTTATTTTTTAATAGCTTAAAATCTACCCAAGAAGAAGTTATTACAGTTGGTTCTGTAACAGCAAATAGGGGTAGATATAGCGAAGCTGTCACCAGGGGCAAGATAGGCTAAAAGCCTTACAGTGAGAGACTTTTAGACAATGAAGAGTCTTTAGTGATTTTTTAGACATCATCTTAGATCACAGTCTCAATTGGCAACCGTTCCTTCATGTCCAAGCGAAAAGTACCATAAGGATTAACATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCACCGATTGGGTTAATTCGGAATAATTGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 85-861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000061.1 Anabaena catenula FACHB-362 contig61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 85 36 78.4 38 T....T.....-.GG.A.GT................. CAAACAATCCGTATCCTGTCCCAAAAATAACTTCATCT A,G [87,101] 161 37 100.0 40 ..................................... GTTCGCCGTACAGGACAACAAATTATTGCAAATCAATCAG 238 37 100.0 37 ..................................... ATCGTCCATCCCTAGTTTCCGGGCGATGCGTTCCCAA 312 37 100.0 38 ..................................... ATTAATTCTTTCTTGGGAAAAACTAGAAACTCTAGATT 387 37 100.0 38 ..................................... GTTGGTGAGGAGAGCATGATATGCGAAGAATGTGCCGA 462 37 100.0 38 ..................................... CCAGATTATTACTTTGCTATCTTCACGAAAGACGGCAA 537 37 100.0 34 ..................................... GGAGAAGATGATACGTAAACAGCATCATACATCC 608 37 100.0 35 ..................................... TCAGATTCAAAAACAATATGAATTTCTCAATGGAT 680 37 100.0 35 ..................................... CAATCGCGTCAATCAGTCGGCTTGCGATTTCTGTC 752 37 100.0 36 ..................................... TCACTCATCACAATCCAAACTATTTTAATGACCATG 825 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 97.8 37 ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Left flank : GGCATCTCTAACGCTTATTTTAGCGTACCAGCCAGCTACCTTTGCATTGGGGCATCTCACTTTTAAAAGCAGTGGCAGTAACACT # Right flank : CTATAGCAAAATGACAAATTCAGGATTTCTACATTAGGGATTAAAACACAGTCCAAATTCTGGAATATGATGAGGATTACAGTTATTATTTGCTTCCATGACCAAACAAACAAATACAATAGTCATTTTTGATATAGATGGAGTAATCCGTGATGTCGGAGGCTCATATCGCCGCGCTTTAGCAGATACTGTAGAGCATTTTACCCACCAGGCTTATCGTCCCACACCTGTAGATATCGACAACCTGAAATCAGAAGGGATTTGGAATAACGATTGGGAAGCTTCCCAAGAATTCATTTACCGCTATTTTGTCAGTCAAGGAACAACCCGCGCACAACTGCAATTAGATTATGAAAGTATAGTTACCTATTTTCAAACTCGTTACCGGGGTACAGATTCAGAAAATTGGAATGGATATATTTGTAACGAACCTTTATTAGCACAGCCTGGTTATTTTCAAGAACTAACCCAATCTGGTATTTGTTGGGGATTTTTCAGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 6281-6030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000088.1 Anabaena catenula FACHB-362 contig88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 6280 36 94.4 35 .....................A..G........... AATTCCCCACCAATTTTTGTTAATAGTGCGTATTG 6209 36 100.0 37 .................................... ATAAACGCTGGAAGGGAGTTCACGACTGCAAGGATTA 6136 36 100.0 35 .................................... AACGCCATTGATTGAAACTGTAGTTTAAATGGGTC 6065 36 94.4 0 ................A.......G........... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 97.2 36 TTGAGCAACGCCTAACGGCATCAAACCACGAATCAC # Left flank : ATGCCCGTTTAGCCAGAGAACTAAACAACTCAGATGGCTTCAAAAAATAACCCAATTCGACAATAGATTCCTCTTTAATTGCCTCTAAATATTCCTGCCCCTCATTCGACGACTCATCAAGCTTTAGAAAATCAATCTTATCTTCAGCCAAAATCTCATTGGCGTAAAGATGCTGACGCTCGGATAGGTACTTATAGAAAATAAACCCTAAGCAATAATCCCGAAACTCATCAGCGTTCATCTTGCCCCGTAGTGAATCGGCAATATTCCAAAGCTGAGTTTCTAATTTTTTCTTTTGTCCGTTTTGTCCGTTTTGTCCGTTGGTCATTTATCTCTCGTACTGGGCGTTACCGCAGGTCAGCGTAGCTATCTCTAGCACCGCTAAAACGCTAAAAAATTTTGTCTCAGCCAAGTATAGGACATAGCAAGGGACTAGGCATGGAAAAGTTATACTACAGCAAGAATTTATGCGATCGCAGTCAATAATTTTATCTCGATAT # Right flank : TAATAACTGAGGTTTCAGTTTGGAGATTGAATCATCGTCCACGCCAAATCAGGAGGTGGTGAACTTGGTATTTCCTCAATCCGATACCTCAAAAATCGGGTATTTCTTGACCCCACATGATCAACCCAATAGGGTAAGGTTAACTTACCTCTATTATCCCTAATTGCCCACCGTTTCACCCCTTCTAAATAATCTTCCGAAACAATTTTGATCGTTTTAATCAACTGGTCACTTTCTCCCAAAAATAAACAACCAAACCGTCTTACTCTCTCAGGATAATCAAAAGCTAACTGTATCTTCTCCCTTAAACTTGGTTGTATCTTCTCCCCCTCAGAACGAACCCAAATCAAACACTTGAGATTAGACAAAATTTCTTGATAACAGGGAATTACATTCTCTGGATGGCTAAAATCAGCATTCTTAAACTGTCTAATTTGACGCAAAATTTGTGACTTTTTGGGACTAGATAACATAGAGAGCGCCAATTCTACCCCACAGTG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAGCAACGCCTAACGGCATCAAACCACGAATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 142620-146667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTQ010000008.1 Anabaena catenula FACHB-362 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 142620 37 100.0 40 ..................................... CTAACTATTCAGAAAAGAAAGATAAGGAAAAAGCGAAATC 142697 37 100.0 39 ..................................... CCATACCAACACCACCTTACCCAGGAGATACCTTAGAAA 142773 37 100.0 36 ..................................... CAAGAACAAATAGATCAACTAAATGCTAAAAAAGTA 142846 37 100.0 40 ..................................... CCGACTTGGTTATTCCCTGGTTTGGGCAATGCCAGCGGCG 142923 37 100.0 37 ..................................... CCTTGGTTGCACATTATGGGTGAAGGGAAAACCGAGG 142997 37 100.0 35 ..................................... ACGAAACCAGAGAATACTTACTAGAAAAGTGGAAT 143069 37 100.0 36 ..................................... TAACAAATCTTCGTTTAAAAAATCTTCAACATCAGA 143142 37 100.0 36 ..................................... GGTTGAACCCGAACGACGGCGGGCGGCTTCACCTTC 143215 37 100.0 35 ..................................... TCCTTGACGCAAGTTGCAACAAGGCATTATTCACT 143287 37 100.0 35 ..................................... AGTTGTGTTGATTCACTCCATAGGGATAGACTTAC 143359 37 100.0 39 ..................................... TCTTTCCATGTACAAATTAATAGCTTTTGTGCTACTATT 143435 37 100.0 34 ..................................... CATTTTCCGCCCCACCCGCAGTATCTGAAGCAAC 143506 37 100.0 42 ..................................... AAACTGGCTCAAAGTCTGCTCTACCTGCTTCTGGCGTAGCGT 143585 37 100.0 35 ..................................... GCATTGGGAATGGTGGAGTTTCCCCGCAGCAATTA 143657 37 100.0 35 ..................................... ATCTTTGTGTTCCTGATGAGCTAGCTTTAATGCAA 143729 37 100.0 33 ..................................... ACCAATGTTGGGATCTAGCCTTCCTTGGAAAAT 143799 37 100.0 45 ..................................... TTGCTTCAATCGTGAGACTGTGCGAAATGCTGATGCATATTCATT 143881 37 100.0 39 ..................................... CTTTTTTGCAATTACACATTCCTTCTTTTTCCTTTTCTG 143957 37 100.0 37 ..................................... TCTTGAAATTAGGATTATTACGTATCTTAAATGCTTT 144031 37 100.0 39 ..................................... ATAGTATTTGTCTACTCTATCAGTTGGAACATTGAGTTG 144107 37 100.0 37 ..................................... AGAGAATGAATTTTTCCCCACACCTAACGCAACTATC 144181 37 100.0 35 ..................................... CTGAAGCTTTAAAACAACTTCCTAGCCACCTAACC 144253 37 100.0 36 ..................................... TTCTACGGGACAAACTCGTGGGGCAGAAATTCAATG 144326 37 100.0 36 ..................................... GTTTAATTACTCTTCTATCGTTCGTATAGCCAAATT 144399 37 100.0 43 ..................................... TTACGCCGCTGCTGTAATGTCGTTGGGGCAGAAGGAAAGCTCA 144479 37 100.0 35 ..................................... CGATTTGGTTCTGTTGGAGAGCAACTTGTTCGGGT 144551 37 100.0 33 ..................................... AATAGTAGTAGTGGCTTTTGAATTTTCTCTAAT 144621 37 100.0 36 ..................................... TGGTTCTTCTACTTCTACTTGGCTGGCTGCTAATTT 144694 37 100.0 38 ..................................... CAGTCCAATACAAGTGTCGCCAAAAGTTGCCAGGAATT 144769 37 100.0 38 ..................................... ACCTACTATTTCAGCCAATTTATGGATAGGGTAATCGT 144844 37 100.0 33 ..................................... GCTTGAGATTACTGGCACAAGCATCGCTGAATA 144914 37 100.0 34 ..................................... CAAGAGAGATAGGGGAGGCGGCAAAATCTATCAG 144985 37 100.0 34 ..................................... GATGAAGGCGCAACTCTAGACCCAGACAATTACT 145056 37 100.0 48 ..................................... ACTCGTAGAATTTTGTAGAGGAATTCGCCTCTCCGCTTGTAGTTGTAG 145141 37 100.0 41 ..................................... TTGGTATGACATCGAAAACCGTCCTAGGGGTGCGGCTTGGG 145219 37 100.0 34 ..................................... ATTTCTGGTATGGCTTTGGGATGGGATGCCGCGA 145290 37 100.0 39 ..................................... CGGTCTTCAAATAAACCTGATGACATAAATAAAGCTGAG 145366 37 100.0 37 ..................................... AATTTTAAAAAATTGGATATCCCCACCAAGAAAGAAC 145440 37 100.0 44 ..................................... AAAACTACTATAGAGAAAGATGTCCCAGGGCTAGGAGCGCAAAT 145521 37 100.0 35 ..................................... GAGAATGAAAAGTATATTTAGTTTTAAGTTATACT 145593 37 100.0 43 ..................................... ACCATACCAATAGGCATGATGCAGGAAATTGTAAGTATCTGGG 145673 37 100.0 35 ..................................... TCTCTGAGTTTGTTCGATGCGCCTAATCTAGCAAT 145745 37 100.0 36 ..................................... ACCTCTTACTGCCCAATCGGAATGATACTCTAGCCA 145818 37 100.0 37 ..................................... CATATGTACTAGTTGGGTACTGAATTTTGCAGAGTGA 145892 37 100.0 41 ..................................... TTTTCGCTCTATCCAATACGTACCATTCCAATACCATTCAG 145970 37 100.0 40 ..................................... TGGGGAGCGGATAAAGGAGCGGGACGTGCTACCAACGCTG 146047 37 100.0 45 ..................................... ATTTCAATAATCCTGCGAGAAAGCCTTCAAGAACTAATGCGACGA 146129 37 100.0 37 ..................................... GATTGAACGAGTTGGATATCGGGATAGCCCAAGCATT 146203 37 100.0 32 ..................................... CGGTGGAGATCCGAGAATCCTAGTAACCCAGA 146272 37 100.0 31 ..................................... AGCAGACAAGTATTTACGCCATTTTACGAGG 146340 37 100.0 34 ..................................... AGGAGAAATAATCATGCAATTACCCGCGCCAACA 146411 37 100.0 34 ..................................... GTATATTGCCAATACTCCCTACTACAGGAGTGGA 146482 37 100.0 37 ..................................... TTGATTTTGATTGATTCTAGTAAGTCACGATATTCAA 146556 37 100.0 38 ..................................... CAGCCTTTCTTAATGCATTACCTATCTTACCATTCTGA 146631 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 55 37 100.0 37 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGTCGTACTAAAATTCACAATATCCTCAAATCTTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAACTGATACTCAATATGCTAAACTGCGATCGCGTCTCAATAAACTTATTAAGCCAGATACCGATAGCATCCGTTTTTACTTTCTCTGTGCTTGCTGTTTTGGTAAAGTGGAACGCATCGGTGGTGAACAACCCCGCGATGAGACTATTTTCTTCGCTTGATGCGCGGATGGGTGGGTGTAAAAAATCCCGGTCAGAAAAAAATGGCTGAAATCATATCTATACAAGGTTTTCATGGTTTTTCTTTGGTTCACCCATCCGCGCACCTTACACAGCAAGGGTTTCAGCTATTTTCACTCTTGACACGATTCCTGAAATGGACTATCATCAGATCATCCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCGGGCTACCGCA # Right flank : CATAAGTTGCGTAAGCACAGAAATCACGAAAAACTAGTGAGTAAGCACAGAAATAAAGCTTCAGTCCACTCAACAACCGCACCATAAGTATCTCCTGTATGTCCACCTAACTTATGATTAAACCAAGCTGCTGTTGAACTAGAAATCACAGATCCAATCATCATCATCCCCATAGCCAAAACTAAATTCTGGGGATTCATAAACCAAACCAAACCACTCACACCCAACAGTAAAAACCAACTCGGTAATAAATCTTTATAGGAACGAATCGCTTGTTTATGAAATGCACCTTTACCTGTAGGCTTTAAATAAGGATAAAAAGCGATCGCAACTTGTTGTCCCCAACGTCCCCACCCACAAGCCGCAATCAACGCCAAATAGCGGTTTTCTGACAAATCACTCAACGCAGCCGTTTTCAATAGTAAGATAGCGATCGCAGCCATCGCCCCAAACGCACCCGTAGCACTATCTACCATCACCTGCAATCTTCTTTCAGGATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //