Array 1 93839-95320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTW010000002.1 Campylobacter concisus isolate 2010-112758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 93839 30 100.0 36 .............................. GCTCATTGATATAGTATGGGTTGTATTCGTTGCAGT 93905 30 100.0 34 .............................. ATAGTGGTTCTTGCAAAGATAATTCTTCATCTTT 93969 30 100.0 34 .............................. GTTCGTCCAGCCTTTTCGAGCCGTGCAACAAACG 94033 30 100.0 36 .............................. TCTTGTAAGAATATATGGCAGTTTGAGAAAGAAAGA 94099 30 100.0 35 .............................. GAAAGGAATAGGCAATGAAAAAAGAAGACAATGAA 94164 30 100.0 36 .............................. TCTGCGTATTGCGTTGCTATCTCTGCTTTTGGTGTA 94230 30 100.0 36 .............................. GTAGTTTGTATCGCCCTAATCTATGAGATGTGGCGT 94296 30 100.0 35 .............................. TCTTTTTTGTAAAGATACAAATTCTTTGCTTCGAG 94361 30 96.7 38 ....A......................... ATCTTTTGCAAAGTATCCGTTAAACTAGCTTTTACATC 94429 30 96.7 38 ....A......................... AACCAATGTCTTTGTATTCATAGCTATCGGTTTTTTGG 94497 30 96.7 34 ....A......................... TTTGGGCGTTTGACGACTCACGCCAAGGGATGCC 94561 30 96.7 36 ....A......................... TAACAAAATTTTGGAGCGTATAGCAAAACAGGTAAA 94627 30 96.7 37 ....A......................... ATAAAAAACTTGAAAAGGAGTGATAATATGACACTTG 94694 30 96.7 37 ....A......................... AGTGTGTTAAGGGTTGCTGTAAAGTCTATAAACTCGT 94761 30 96.7 34 ....A......................... CGTCCTCTAAGTCTCTGCCTCCCTCTTCATCTAC 94825 30 100.0 38 .............................. AAAGACGGACAGCCTTTTGTTTTTGGCTATATGCTACC 94893 30 100.0 38 .............................. ACAAGATGCTTTCTCAAAGACAGCTACAAAGAGAAAAT 94961 30 96.7 35 ......................G....... TTTCTCCCAAAATCCGAAATGCGTATAGGTGCAGG 95026 30 100.0 37 .............................. AAGAACCGCTTAATGATAAAAAGATAAGCGTAAAAGA 95093 30 100.0 38 .............................. TTTTCTCGCTATCTGCATTTGTTTGAATTAAGCTTAAA 95161 30 100.0 36 .............................. CCAAAACAAGGCAGAACAAAGGTAACACAAGCGGAT 95227 30 100.0 34 .............................. CTTTCTATACCCCTTATAAACTCCTTTCAGATGG 95291 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 98.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGTTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTTCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTGTGAGACGCTCACGGTGGGCAGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAGGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATTGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTGCACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAACGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CACACGACATAAAGTGACAAATTTAAAAGCCAAAGATTTTCAAAGAAGAGATTTAAATAATATAGTTGCTATCTTGCAAAGATCTATCAAACGAACGATAATATTGTTTTATATAGATACTTCAAAAAGCCAAAACCCCAGCCAATACAGCAAAAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAAACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAAAATCTCTTTTGCTTTTTTAATATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 14409-15836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTW010000005.1 Campylobacter concisus isolate 2010-112758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 14409 37 100.0 39 ..................................... CTTGTAAGCTTACTTCTCTTTCAAAGACAACGTGGTTGC 14485 37 100.0 38 ..................................... ACTCCTTTACTTCTCTTGTACCTATAGCCTCAATTGTT 14560 37 100.0 37 ..................................... AAGTTCCAGCAGCTCTATGAAATGCTGAAATTAAACT 14634 37 100.0 45 ..................................... CTCTTTCTCAATAGCTTCTTCAACTGATTTACCAGCGAACATCTC 14716 37 100.0 40 ..................................... AAGTTTCTTTATTAGAACAGCAGGCAAATCTAGCTAAACT 14793 37 100.0 41 ..................................... TTTTGCGCATTATAGCGCTCAAAAGGGATATAATCCCCTAA 14871 37 100.0 43 ..................................... TCTATTACCTCATCCAAAACTTCTTCTGGAATGAGATAATAAA 14951 37 100.0 36 ..................................... TTATAAGCTAGTAGAATAGATAAAGAATTTAGCTAT 15024 37 100.0 42 ..................................... TCCATGAAGCCGTTTTTATCGGGATCAGTTCCGATTGAAAAA 15103 37 100.0 45 ..................................... ATCATCATACATAGCTCCTTAATTTGTGGAATACGTCCAAATCTC 15185 37 100.0 39 ..................................... TTTCACCATCCCTCATCAATCTGCTTGTTCTAAAATTAG 15261 37 100.0 38 ..................................... ACCTTGACACCTCTTTCCAATCTTTTTGTCATTCTGCA 15336 37 94.6 44 ..TA................................. AAGCACCCTAGGAGCATCATTTCAAAAATAGCCTGAGCTATTGT 15417 37 94.6 37 .................T..G................ GCAATTTTTCCGAAGAATGTAATGTCTATAAACATTA 15491 37 94.6 37 ..TA................................. ATGTTGTTATTTTGGTGATCCCATGATCGATCACATA 15565 37 94.6 43 ...C..................T.............. GCGCAACATTGCCCATGATAAACACACCAAGCAAATTTAGCAA 15645 37 100.0 41 ..................................... CTACCATCTGCGATCAAAAAGCCAGCAGGGATAGTTTTTTG 15723 37 89.2 40 ..TC....T.............T.............. GCTGTAAGTGGCGTCTGTGCCAGTACCATTTGCATTTGGG 15800 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 98.2 40 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AAAGCTGCATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTACCGCATTTTTATATTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCCCTATCCCAAAAAAGACTTTCTCGAACTTTTATATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATATAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTTATAAATGCCCTTATATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCAAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : CTTCTAAGCTATAAAGATAAGGGGGGGGTTAATTCTCCCTATTTATTATTTTAAGGAGAGTAAAATGGATAGAGTAGAGGTAGGCAGTAGTTTTGAGTTCTATGTTGGATTAATTACAGTTCTCTTAGTATTTTTCGTATTTAATCTATTAATAGCTAGAAGAGAAATTAAAATTTATCAAAGTAAGTTTGATTTAATAGGAGTATGTGCTATACTTCCATTAGTAGCAATGGTTTTCTTAATGTTATATCTACATATAACTAAGAATGTAGATGGATTAGTATTAATGGTTTTAATTCTATTCGTACTATATGTAGGATATGGACTTAGAGTAATTTGGAAGAATAATGATGGATTCTTTAATTGTTTAATTGCTTTCATTATTAGGATGAATATCTTATGCTCATTCCCACTACAGCTATTACTATGGGTTATTTTACTTGGAGGTACTTACTATGTAAATGGAGTAAGACTTACTAAGGATAATATCAGAAATTATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //