Array 1 41-1351 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHGV01000040.1 Cronobacter sakazakii strain MOD1_Jor204 Jor204_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41 29 86.2 32 TCCG......................... GTTTCTGCCTCTGAAGCCCAGCCGAGGGGATT 102 29 96.6 32 C............................ TCTTCCGGCGAGACCGCCAGCTCCACCTCCGC 163 29 93.1 32 CC........................... CCAGCGCCATTGCAGCATTCACACTGTTTGGT 224 29 100.0 32 ............................. CAGAGGCATTACAGCCGAAGTACAACGTAGGG 285 29 100.0 32 ............................. CCCCGCTCCGGCGGGGTTTCTTTTTATAGGTG 346 29 100.0 32 ............................. TGGGCCAAAATTGCGATGAAAGTCCCGTCGAC 407 29 100.0 33 ............................. CGCTGTTCGCACAACTCACCGGCTTTGATACCC 469 29 100.0 32 ............................. TTGTCATCAAAAATTATCCGCGTTTCCAATGA 530 29 100.0 32 ............................. CTCGACAGCGAATTGCGCATTGCTGCCATGCT 591 29 100.0 32 ............................. GTGGCTCGCTGGTGGCTGACGCTGTTGACCGT 652 29 100.0 32 ............................. CCTGAGTATTTGTTGCGCGTTGAAAAAGTGCC 713 29 100.0 32 ............................. CCAAAACAAGCCGCAGTGGCGGCGGGGGGTTA 774 29 100.0 32 ............................. CCGTCACGTACTGGCGATCTGACTGGACGGAA 835 29 100.0 32 ............................. GATCATAGTCTGTGATTGTGCGCCCTTGCTCC 896 29 96.6 32 ............................C CAAACATACCGCCCTGCTGCTTGATGAGACCC 957 29 100.0 32 ............................. CACATCCTGTCACGCGACATACTCGGAAGGCA 1018 29 100.0 32 ............................. CGTAAATTTAGAGGGAAAGGCGCCGCCAATCG 1079 29 96.6 32 .............A............... GGCATCCCCATCGTTGGTGTTGGCGCTATCTA 1140 29 100.0 32 ............................. AGATTACCGGCGTGCGCGTAGAGCGGTTGCAG 1201 29 96.6 32 .........A................... TGCGGGCGCAGGGCGTTGAGGCCGCTATTGCA 1262 29 100.0 32 ............................. AGCGAACGGCCTGTGCGCAACTACAGCTACGC 1323 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GACAAACCGGCCAGTATCGGAAATAACAACGATTTTGTCGT # Right flank : GGTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGCATAAAGATAACGGCAATACTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATGATTTTTATTGCTGGTTTTTATGTTGGTTAACTTAATTTCAAAGTTGAATACAGTATTTATTAATTTGTGCATGTAGAATTTCTATGTTCTTCAGTTAATAGGGCTTTATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACAGGATCGTGCCTACAGTAATAGCCATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTGATATACATCCAACGCCTTCTGCAAAAGATATGGGTAAGGCATTGATTCAAGCTGGTTTCTATGAGGTTTATGGTGAGCCCGTAGCTGGTGATGTCGCTGTTATTAGCTCGATCCCCGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154444-154777 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHGV01000013.1 Cronobacter sakazakii strain MOD1_Jor204 Jor204_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154444 29 96.6 32 .C........................... GCGCGGTCAGGCAGCTTTCGAACTTAAGCGTG 154505 29 96.6 32 .C........................... ATGAAGTTCGACAGCCGCGCATCCGTAGCTGC 154566 29 100.0 32 ............................. TGCAGGCACTCGCTGCGCGCCGGTTGACGGAA 154627 29 100.0 32 ............................. GCGCAGATCTCGACCAGCTCGGCGCTAATTTT 154688 29 100.0 32 ............................. ACGCCAAAAAAGCCAACCTGCTCACCCAGGAG 154749 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //