Array 1 1473989-1473008 **** Predicted by CRISPRDetect 2.4 *** >NC_016625.1 Burkholderia sp. YI23 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================== ================== 1473988 28 100.0 33 ............................ GGGAGCGAGTCGCCCTCTGTCGTCAGGGGTGGG 1473927 28 100.0 33 ............................ CGCATCGCGCAGGGCATGGGCTACAGCGCGCTC 1473866 28 100.0 33 ............................ CGATATCCATCGTCAATTGCACCAATCGTTTCA 1473805 28 100.0 33 ............................ CCGGACCCTCCTCGTACTGAACGACGCCCGGCG 1473744 28 96.4 33 .................A.......... GTCGAGGCGCAGCGTGTAAGGGCCGAAATCTGT 1473683 28 96.4 33 ................T........... ATACTACTGCGTGAAACTGGATCGGATCGACGA 1473622 28 96.4 33 ..........T................. CGTCACGGGGACGTATCATGATCCACAAGGCCG 1473561 28 96.4 33 ..............C............. GTGGGGGCTTTACGCCATCGGCCAGTACTGCGA 1473500 28 96.4 33 ...........................T CCCAAGACAGAGGGCGTTACACGGAGCCGTCTA 1473439 28 96.4 70 ........T................... CGGCGCATATGACTATGCGCGTGCTTTGCGCAAGACCGTGAGGAAGTTGCTGGACGAACACGACCGCATG 1473341 28 92.9 33 ..........T..............G.. CGCAGGGCCTCGACAAAAGCGGCGGCAGCGGCG 1473280 28 89.3 33 ..............G......T...G.. TCCGATGATGGCCGGCGCGGCGACTTTTGTGCC 1473219 28 96.4 33 ..........T................. CTTGTGTAGCTCTTCCATCGTCATCACCTCCAG 1473158 28 92.9 33 ............C.C............. CACCGAGATCGACGAACGGCTCACGCGCTGCAA 1473097 28 92.9 33 ...........C..C............. TTTGCCGTTCAGAATGGGCGACTGAGACTGCCC 1473036 28 85.7 0 ...........T..CA.........C.. | T [1473010] ========== ====== ====== ====== ============================ ====================================================================== ================== 16 28 95.5 36 GGTTCCTCCGCGTGTGCGGAGATAGACC # Left flank : GTGCGGCGCGAGGCGGCGCGCGTGTTTCGAAAGAAAGCGGTCATTCCCGCGATGATCGATCGCGTGAAGCAGGTACTGCGTGTTGACGAGAAGCGGGAGGCGGGCGATGGCGCTGGTCGTCGTGGTGACGAGTGATGTCGCGGACCGGTTTCGGGGATTTCTCGGATCGGTGATGCTCGAAGTATCGGCGGGGTTGTATGTCGCGCCGCGCATGAACAAGGGCGTGCGGGAACGGACGTGGTCGGTGCTTGCCGACTGGCACGGGCATGAGCCGCGAGGCAGCGTGGTGATGGTGTGGCGGGATCTGGATGCAGTTGGGGGGATCGGTATCTCGCATCTCGGTGCGCCGCCGAGAGAGCTTGTGGAAGTGGATGGGATGTATGTCGTCAGGCGGATGATGGTGGGGTAGGTGGGGGTGGTTTTGTTCTTTGAAAATTGGGATGGTTTTACTGGATGGAAATGGGGTATTTGCCTTTTCTGTCATGGGGTTATGAGGGAGA # Right flank : CCAACGACTGGCACCTCACCCCCCAACCCCCACCCGCTCCACCCCACCTCCCACCGCCCGCGCCCTTCTCCCACCCGCCACAAAATAATCCGTACTCACCCTCTCCAACGCCGCCACTCCCCGAATCCGATCCGCGATCTTCTCCGCCAGCATAATCGTCGGCGCATTGAGATTGCCGGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAAGCCTTCCATCCCGTGCACGCGTCCTTCGCCATCGACGACGGCCATATCGTCATAACCCATCTTGCAGGAACACGAAGGATGAAAAGCCGTCTCCGCCTTCGCGCGCACGAATGCATCGAGCTCGGCATCGCTCTTGAGATCATCGGAAGGATGAAGCTCGCGCCCGCGATACCGCGCCAAAGCCGGCTGCCGCATGATGTCCCGCGTGATGCGAATCGCATCGCGGAACTCGCGCCAGTCCAATGTATCGGCCATGTAGTTGAAAAGAATGCTGGGATGCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGTGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 532740-533560 **** Predicted by CRISPRDetect 2.4 *** >NC_016589.1 Burkholderia sp. YI23 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 532740 28 92.9 33 ....G.....T................. GTGGTGATGGCTACACAGCTCCCTATCGACAGG 532801 28 100.0 33 ............................ GGGACTGGAAGAGTACAAATGCCGCTGGGTCGG 532862 28 96.4 33 ..........T................. CGCCGATTGTGCAGCGCAAACCGCGCCAACGAA 532923 28 100.0 33 ............................ CTATCCAAGCGATGAACTGCTCGACGTGGCCGA 532984 28 96.4 33 .G.......................... CCGACACGAAATAAGAATCTGCCGCCGGCCATG 533045 28 100.0 33 ............................ CGCCACTTCGTAGTACCGGCGGGGACGTTGTTG 533106 28 89.3 33 .............AC..........A.. CCGTCATTCGCGCGATACATCGCGAGCATGAGC 533167 28 92.9 33 ..............C..........A.. GCCGTAGGACTTCGCGCACGTGACTGTCCCGCG 533228 28 96.4 33 ..............T............. TACATGCTGTCGAGCATCATTGAGATGTGGGGC 533289 28 96.4 33 ..............T............. TCGGTCGCGAGCTGGTACACGGCGGCCGGTGGA 533350 28 96.4 33 ..............T............. GTCCTCGACGCGGGTACCCCGACCGACTTCTTC 533411 28 96.4 33 ..............C............. TCCGTGAGAGGCAAGCTCCACGGGCGTTAGCGA 533472 28 92.9 33 .............AC............. CCAGTAGACTCGGCGCGCGCCACCGAAGAAACC 533533 28 92.9 0 ..............C.......C..... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 95.7 33 GTTTCCTCCGCGTGGGCGGAGATAGGCC # Left flank : GCACGTGAGTCCGCAACAGATCGCGGATGTGATCGGCATTGCGCCTCGCTTGCCCGATGGTTCGGATGCGACTGCGCCGAGGGCGTCGGGGACGTTGAAGGCGCATTACGCGCCGAGGACGCCGCTCGTGCTGCTGCCGTTTTCGGCGATGGAGCCGCTGCTTCGTCGTGATGGCGACAGGAAAATCGCGCTGGTGGCGCGGGCGTCGAGCGCGGGCGAGTGGGCGCGTGCCTCGCATGTTCACTTCGTGGCGGCGCCGGAAGATCCGCAGTCTTATGCCCGGGATCTTTATGGTTTGCTGCGGGCGCTGGATCGGGCGAATGTGGAACGGATTCTGATCGAGAAGCTGCCGGAGACGGTGGAGTGGATTGCGGTGAATGACAGGTTGGGACGGGCGGCGGCGGCGTTTGAGGCTGAGGAGTGATTCGCTGCGGGTTTTGGGTGAATGTGAAGATCGGTTGTCGGGATTCCGCTTTTGGATCAGTTGGTTATGATCTGGG # Right flank : CGTGAACGGGAGGTCATTTTTCACGATTCGCGGTGTTTCCTCCGCCTGCAGAGACACCCCCGCCCGACGATTGGGCTCGCCCAACCTCTGCGCAAACCCTCCGCCTCGTAACGGAGCCCTCCAAGAAACAAAACCGCCCGGACAATCCCTCGTCCGGGCGGCTTCCCCATCTCAAAGCGAATCGCTTACTTCCCCAACCCCGACTTCGCCACCACCTGTTCCGCCGCTTGCGCATACAACGCGCCCAGATGCGTCGTCGGATGCACGGTATCGGCGTACATGTAGGTCTGATCCGCGCCTGCCACAGTCAAAGTCTCCGGCGAGCAAAACAGGGAAGTCGCGAAAGCGGCCGGGTTGGGTTCGCCGAACTTCTGCGCCGCCGCCGCCATCGCCTGCAGATTACAGGCCGTGCCGGTATTCGACACCGTGAATCCGAACTGCCCAAAATTCGCCGTGACATTGGCGAGCACCGGCACGATGTCGAGATAAATCACCTTCGA # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGGGCGGAGATAGGCC # Alternate repeat : GTTTCCTCCGCGTGTGCGGAGATAGGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 734928-733745 **** Predicted by CRISPRDetect 2.4 *** >NC_016589.1 Burkholderia sp. YI23 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 734927 25 100.0 36 ......................... ACCCGCGGTGCTCACGGGACACGTCGGCAAGGAAGC 734866 25 100.0 36 ......................... ACCTATCTGACGCCCGCCTGGACCGCGATCTTCGCG 734805 25 100.0 36 ......................... ACCGCACCATGACCGCATTGTCCACCTCGTCCAGAG 734744 25 100.0 36 ......................... ACCGGCGTCGCGCTCGATACGCGGGCGGGCGAGGCG 734683 25 100.0 36 ......................... ACCTTTGTACGATGGCTTGCAGAGCCCCGATGACGT 734622 25 96.0 36 .....T................... ACCGGCAGAGTGAGGGACATTCAGGCGGACCAGACC 734561 25 100.0 36 ......................... ACCCGGCGTCATCCTCACGCGGTCCACGTCTGCACC 734500 25 100.0 36 ......................... ACCGTCGTTTTCCTGCGCGGACGGGAAGGCGATTTC 734439 25 100.0 36 ......................... ACCGCGTGGAGTGATCGATGAATAAGCAGCACTTGA 734378 25 100.0 36 ......................... ACCCAGCGTGTGGAATCTCGGCCAATCGTGGAGCGA 734317 25 96.0 36 .............A........... ACCCGATTATCGGAAATATTGTGAGTTAGCCGCTTG 734256 25 100.0 36 ......................... GCCGTTGACGGTCTTCATCGACGCCGGTGCGATCGC 734195 25 100.0 35 ......................... GCCCTGGACAGGGAGACTTGTTCGCGAAATAAAAA 734135 25 100.0 36 ......................... GCCTTGTTCACGACTTCGTGTTCCTCTCGGTTGTCG 734074 25 92.0 36 .C........G.............. GCCCGCGAGCGATGAAGAATTGCTGAATCTCGCGCC 734013 25 96.0 36 .T....................... GCCCGCGCATCGTCAGCACGCCCAAGAGCCAGTGAT 733952 25 96.0 36 .T....................... GCCCCCATCGTCGCGGGATGCCGGCAGATTCGTGAA 733891 25 96.0 36 .T....................... GCCCTCGGCACTTAACGCCACGATGCGCGACTGCGC 733830 25 96.0 36 .T....................... GCCCTCGCGGCGAAGGGTCGTCTCGCTGACTCCTTG 733769 25 84.0 0 .T.......A.C...........T. | ========== ====== ====== ====== ========================= ==================================== ================== 20 25 97.6 36 GATTCCTCCGCGTGCGCGGAGATAG # Left flank : TTTCGGGGTTGCCGCGCTCATCGCCCGCTCTTGTAGCGAGCACGCGTTTGTGTTTTAGTGGCCCGTTTTCAGACTTGCCGGAGCGTTATGACCTTGCATCGATTTGCCTTCTTCTGCGCGGCGCTGTCGGGCGCGGCCGCCCTTGCAGCATGCAGTTCGACGAGCGAGCCGGAACTGCGCGCTTCAAAGCCCGTGATTCACGTTTCGTCGGCGCGGGCGGCGTCGGATATATCGAGTTGTCTGCAGCGAATGATTCCATCGGCGCAAGCAAGACGCGATCAAGGCTCGACGGAGTTGATGGTCGGATCGAACGCATGGCTCGTCACGCTGACGCCTTCGGTGTATGGATCGGTGGTGAAGGTGCAGCAGTCATCGAGCGACGATGGTGGCGTGCCGGAGCCGGAGCTTCGGTTTGATATTGCGAGGTGTACGACTTGAGGGGTGTTTTCTAGGATGGGTTGGGTGATTTGGTGTTTGGGATCATGAGGTTATGATCTAGG # Right flank : ACCCTAGGTGATCTGTTCGCCCCGCTTAGTGAGCTCGCTTCCTCCGCCGCCCCCCCGCCGGAGCCCAAAAACAAAAACCCCGCAAGCCTTACGACTTGCGGGGTTTTCAGATTTTGGCGGAGAGGGTGGGATTCGAACCCACGGTACGGGAAAACCGTACGCCTGATTTCGAGTCAGGTACATTCGACCACTCTGCCACCTCTCCGGCTACCAGTTCATTTGACAACTTACTGGCCTTCGTGAGCCGGTCGTTGCTCAACGAAGAACGAAAGTATATCGAACTCTTCCGACCTTTCCAAGCCCCTTTTTGCAAATAGGTGTCAAACGGAAGCGGCGACTTCGATCCGTTCCGCACCGCGCATGTACGGGCGCAACGCGGCGGGAATCGTCACCGAACCGTCCGCGTTCTGGAAGTTCTCCAGCACCGCGACGAGCGTGCGCCCGACCGCCAGCCCCGAGCCGTTCAGCGTATGCACGAACTCCGGCTTGCCCTGCGCGTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCCTCCGCGTGCGCGGAGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.70,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //