Array 1 183938-182050 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWN01000067.1 Pseudomonas aeruginosa isolate LRJ15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183937 28 100.0 32 ............................ GTTCGCCGGATCGTTGATCCGACGAGCCGGGG 183877 28 100.0 32 ............................ TGTTCATCCTGGCAGCCGGCCCGATCTGGGGC 183817 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 183757 28 100.0 32 ............................ AAGGACTATTAAAGGCAGTGTTTCTTCGCTCA 183697 28 100.0 32 ............................ AGAAGCCCCGCCGCCAGATCGAGGAATATATT 183637 28 100.0 32 ............................ TCGACGCGGAGCTTGCAGCCATCGACGCGAAT 183577 28 100.0 32 ............................ ATTGCCGTTACCTCGAGCTTGTCGTCTATGGC 183517 28 100.0 32 ............................ GTCCCGGTATTTATCCAGGCCTGGGCGAGTAA 183457 28 100.0 32 ............................ AGTAACGGCCAGGTTCGCATCAATGCGCCGGA 183397 28 100.0 32 ............................ ACCCCAGATCGGAAAACGTCGCACCCCTTGCC 183337 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 183277 28 100.0 32 ............................ ACCGGCTGCGCCTGCTCAACAACCTTGGCAAC 183217 28 100.0 32 ............................ CGGATCGGACGGAGGTTCGTCCGGATCAGTCG 183157 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 183097 28 100.0 32 ............................ AGTCACAGGTCAGCCCGTCTTCGTAGAGATGG 183037 28 100.0 32 ............................ ACGCCAAATTCACCGCAGTAACTGCACGGACG 182977 28 100.0 32 ............................ GCGACCTGCTGTTGCAGAACGGTTTGACTTAC 182917 28 100.0 32 ............................ AGCACGTGGCGCATAAGCCGGCTCAGCAGCTC 182857 28 100.0 32 ............................ AGATTGCTGTGCGTCTGGTGTTCATAGCCCCG 182797 28 100.0 32 ............................ TCCGAAGAGGCTGCCTAGCCAGATTGCTGTGC 182737 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGCGTCTAAATCCTA 182677 28 100.0 32 ............................ TACAACTCCGAGGCCAACAACGAAATCGGCGC 182617 28 100.0 32 ............................ TTCGGCCGATCGGTCGCGAAAGGCCATGAGTG 182557 28 100.0 32 ............................ TTGCAGCCACCCTCAAGGCCTGTGCCGCCACC 182497 28 100.0 32 ............................ GTAACCCGGCGAGCGTGCGAGCCACCGTCAAG 182437 28 100.0 32 ............................ TACAGTCGAAGAAAGAAAAGCGCCCAAAACGC 182377 28 100.0 32 ............................ TGACTCAGCAGGTCCAGCGAGTCGATACCGGC 182317 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 182257 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 182197 28 96.4 32 ......................C..... AGCTCCGGCACCCCGGCGCCCATTGCCAACAC 182137 28 100.0 32 ............................ CACTGGAGAACGGGCTTACCTTCCTTGTAGAG 182077 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24587-25220 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWN01000014.1 Pseudomonas aeruginosa isolate LRJ15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 24587 28 100.0 32 ............................ ATGCGGTTCTGCCACTCCAGCGGCATGGCTTC 24647 28 100.0 32 ............................ TCTTCGCGCATCGCCGGGGGCAGGACGCCAAG 24707 28 100.0 32 ............................ GGGAGCTAATCCGGTAGGGGATCACTAGCGGC 24767 28 100.0 32 ............................ TTCGAGCTAAGGCCCTTGGGGTCGCTACGAAC 24827 28 100.0 32 ............................ TTGGGTACAAATACCTTGGGTGATATCCCCTT 24887 28 100.0 32 ............................ TGAAGCGGCGCGTCGCCGGCACCAAGGTCTCG 24947 28 100.0 32 ............................ TCCCGCCGACGGGCTGTGTGTCGTGGAAACCG 25007 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 25067 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGT 25127 28 89.3 36 ...................TA.C..... AAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA G,C [25149,25153] 25193 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================== ================== 11 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 34436-33748 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWN01000014.1 Pseudomonas aeruginosa isolate LRJ15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34435 28 100.0 32 ............................ TTCGGGATGATGAACCGGGCATGCGCGTTAGC 34375 28 100.0 32 ............................ TGGCGAGCCCTGGAGCCGTTTCACTCTGTGAA 34315 28 100.0 32 ............................ TTCGGGTTGTGCGGGAGCTGGCCCTGCCAGTT 34255 28 100.0 32 ............................ TTATGCGCCAGTGCCGGTGGAGCCATAGGCCA 34195 28 100.0 32 ............................ TTCAGCAGCGACCCGGTCAGCAGCACGGTGCG 34135 28 100.0 32 ............................ CTCCTTGCCGGGCGCGGCGGCGAGCAGTTTGC 34075 28 100.0 32 ............................ AACAAAAACGCCGGCTCGAGGGCCGGCGTTCG 34015 28 100.0 32 ............................ AGAACGACGTAGATGATGCGGCGGGTGAACTC 33955 28 100.0 32 ............................ ACAAGAAACACACGCTTGCGGCGCTGGGCGAC 33895 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 33835 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 33775 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGTCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGCATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //