Array 1 46524-46850 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018562.1 Staphylococcus argenteus strain 58113 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 46524 36 100.0 35 .................................... CTATAATAGTTACTGCTTTTGTAACCGTCCATATC 46595 36 100.0 40 .................................... AAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTAT 46671 36 100.0 36 .................................... TGCCCACTTAATTAATTCATCTAGTCTCATTTCTTT 46743 36 97.2 36 ......................A............. TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT 46815 36 86.1 0 .........A.......G....C.....G...A... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 96.7 37 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CCTCATCTTGATGATCCCAATTGGCCTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGAAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGTATTAGTATTATAAAAGAGCAAGATTACCATTTAGAAAATG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 1379393-1379529 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018562.1 Staphylococcus argenteus strain 58113 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================== ================== 1379393 25 100.0 31 ......................... ACCCAAACTTGTATTGCTTGTAGAATTTCTT 1379449 25 96.0 31 ......A.................. ACCCCAACTTGCATTGTCTGTTGAAATTGGG 1379505 25 96.0 0 ...C..................... | ========== ====== ====== ====== ========================= =============================== ================== 3 25 97.3 32 TTCGAATTTCTCTGTGTTGGGGCCC # Left flank : TATGATTAATCATGAAACAAATTAAACACGAGCTTGATTGCACATCATCATTAGCGCAATCAAGCTCGTGTTTTCTATATTTATTTTGCGGTATAAGATATTTCATCTTCATGATCGACTACATTTACAATGATATGATCATCTTCGAAGTACCACAAATCTTTTTCTGCAACAACAATATTTAATCCATCATAATGTTGCTCATAGCCAACATCAACGTTTTCTTTAGGTTCAACTGTAAAAGCAGGACTAAACCCTTGCTTGAGTTGGAATTCGCCACCATATCTTACGAAAAACACAAGTACTTTATTATTTTCAGGTAACTCAAGTTCATTTTTAAACCAAGATACAGCTGCATCAGTAAGTTCTATTTGCATAACAACGACCTCCAATATTATTACGAAATGGGCGTGAGACAGAAATCATAAATAAATACTAATTTCTATAAAAGTATTTATTTATGATTGGTTCCCAAACTTGCATTGCTTGTAGAATTTCTT # Right flank : CCGGTACTGAATTGAAAAAGCTTGTTGTATGTGCATTTTCATTCTGTTAACTATTGCCAATATAGCATTTTAGGGGCTAGGACATTGATTTATGTCTCGATCTCAAATGTTCTTATAAAAAAACTAAGTATAATTGAATTTTAAGTTAAAATAATTGTTTTTGCAAAAATAAAATAATCCATCAGCTGCAAAATTTTATGCAATGATGGACTACTGTCAAAAAATTGTTACATCCATTTAATTTTAGGTTCTTCGCCTCTGAAAATTCTTGCAATATTAGAACGATGTCTAATGATTAAGATTATTGAAACTAAGAAACTAACGACTAGTAAAATATAGTCTTGAATAATGAGTGAACCGATGACACAACAAATTGCTGCCACAATACTTGCTAATGAAACGTATTTAAAAATCTTCAGAACTACAAAGAAGATGATTGCAAGTATTAACAAAAGTATTGGGTTAACACCTAATACGACACCGGCACTTGTTGCAACTGC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGAATTTCTCTGTGTTGGGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //