Array 1 54017-54960 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQSQ01000007.1 Escherichia coli strain GN02196 GCID_ECOLID_00022_NODE_11.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54017 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 54078 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 54139 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 54200 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 54261 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 54322 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 54383 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 54444 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 54505 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 54566 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 54627 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 54688 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 54749 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 54810 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 54871 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 54932 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80660-82518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQSQ01000007.1 Escherichia coli strain GN02196 GCID_ECOLID_00022_NODE_11.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80660 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 80721 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 80782 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 80843 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 80904 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 80965 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 81026 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 81087 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 81148 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 81209 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 81270 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 81331 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 81392 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 81453 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 81514 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 81575 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 81636 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 81697 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 81758 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 81819 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 81880 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 81941 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 82002 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 82063 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 82124 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 82185 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 82246 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 82307 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 82368 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 82429 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 82490 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //