Array 1 201353-204495 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZH01000069.1 Limosilactobacillus fermentum strain FUA3589 1875, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201353 29 96.6 32 ............................C TCTTGCCAGGCCACTTATAAGTCGAATATAAC 201414 29 100.0 32 ............................. TGTCTGTGTTGTTACCTTGTGGGGCTGTCTGA 201475 29 100.0 32 ............................. GGTCAAACGGTCACGGCGACCCCGGTTGGCTC 201536 29 96.6 32 ............................C GTCGGCGACCTGGCCAACGTCCAGACCGTCCA 201597 29 96.6 32 ............................C GTCTGGTCAGCTTTTCGGTCATAGTCTTGTTC 201658 29 96.6 32 ............................C CAGTGATGGTTAGTGGCACGCTTACCACTCAC 201719 29 100.0 32 ............................. GACATCACTTGTTTTCTTCTCTCTTGGAGCAT 201780 29 100.0 32 ............................. TGTTCGAGAAGCCGACCACCAGAACTACTAAG 201841 29 96.6 32 ............................C CCACCCCAAAACGGATCACAGGGGCAATCAGA 201902 29 100.0 33 ............................. AATTTATTGATAAAGTATTGCTGACCTTTACCG 201964 29 96.6 32 ............................C TTTCAAGTCGTTGTCATGCACGAAATCAAGAA 202025 29 100.0 32 ............................. ACTTTGTCGCTGGATTGATTACCAAAGACTTA 202086 29 96.6 32 ............................C CTAACGCGCTTGCCACCATCTGAGGAATCGTT 202147 29 96.6 32 ............................C ACGCCGGCTAACAACAACACGACTGCTACCAA 202208 29 100.0 32 ............................. GCCACTAATCCCACCATTGATAAAGCCAATCA 202269 29 93.1 32 .......................T....C ATTGCTGACAAGGACACGGTACAGACGTTAAG 202330 29 100.0 32 ............................. CATGAACGAGTAACACATATAAATAGCCATCA 202391 29 100.0 32 ............................. GTGACCTATCAAGACACCGATATTGACGGCGA 202452 29 100.0 32 ............................. AGACTCCCGAGCGCCCGCTTTTGGGCGTATGA 202513 29 100.0 32 ............................. AATAGCGACATCTACTCGGTGATCTTTCAGCT 202574 29 96.6 32 ............................C GAGTCAACTTACCAGATCATCAAGCGGCTGGC 202635 29 96.6 32 ............................C AATATCACGGAGCTTGGACCGATTAGAAGGAT 202696 29 96.6 32 ............................C CATGGCGAGATATGTTTATCTGGAATGGAAGT 202757 29 100.0 32 ............................. CTGTTCAGCCCGGACCTTATACCGCAGATACG 202818 29 100.0 32 ............................. ACCCTTTGCTGTTTGGTTGGTCTGGCCACTTA 202879 29 96.6 32 ............................C TATGGCCAGGTGACCGGGTCAAGTGGCGCAAG 202940 29 96.6 32 ............................C TCGTCACGGTCGTTAGCCGACGTCCCATGTGC 203001 29 100.0 32 ............................. AATTCTTGTGCTAGTTCTGGCTTGTCCGCTTT 203062 29 96.6 32 ............................C GACGTAATCACGTCGCTCAATAGTTGGTTTAA 203123 29 96.6 32 ............................C GGTGTGCCTTTATTTGCTATCTCCCAACGTTT 203184 29 100.0 32 ............................. AACACCAACCAGGATGCTAAAAACGAAGGTGG 203245 29 100.0 32 ............................. AGTTCCCCCGTTGTTAATTGCATATTCAATCA 203306 29 100.0 32 ............................. AATGCACTGCCGTTAAAACGCGGGTGGTGGAT 203367 29 100.0 32 ............................. CAATATGAAGGGCGATGAGGCAAGCGATGGCG 203428 29 96.6 32 ............................C TACATTGCAGGAGTTTTCAGTGTCGGCGTGGC 203489 29 100.0 32 ............................. CGATCCCGTCCTGTTTTTCCTTCGCTTCAATC 203550 29 100.0 32 ............................. ATAAATCAAAAGCTGTATCATAATCAATTGGG 203611 29 96.6 33 ............................C CGAACCATCTTCAACTTATCCTGTTTAGGCATA 203673 29 96.6 32 ............................C TAAATCATAGTCACTTGCATTATGGTCTAATT 203734 29 96.6 32 ............................C TACTAGCCAAGGCCGTGCCAGATTTCAGTTCA 203795 29 100.0 32 ............................. GGAGGGATAACGTGGAAACAGTAGAATTATGG 203856 29 96.6 32 ............................C ATCTTCTGTTGCACCCGTCCGACCAACGGCAA 203917 29 100.0 32 ............................. ACTTAAAGTAGTCCTTGAACTTCTGCTTCTGT 203978 29 100.0 33 ............................. AAGGGGTATCGGTATGAATCCCGTGCAAATGCC 204040 29 96.6 32 ............................C GCGTCAGTCCGGATTAACCAATCTGATCTAAG 204101 29 100.0 32 ............................. ACCAAACAGCTAATTCTAAGACGGTTCGGCCA 204162 29 100.0 32 ............................. CACGGCTCATATGATTGCCATACGAGTTTAGG 204223 29 100.0 32 ............................. TTGGTATTGTTCATCATAACGAGGTAACTAAA 204284 29 100.0 32 ............................. CTTTATCAAACGGGTCGTTGATCTCTGGGTCT 204345 29 100.0 32 ............................. AGCCGTTGCCATTTTTGGCCAGTGCCAGTTCA 204406 29 96.6 32 ............................C TACGTGGGTGTTACATACCGAGAGGAGGATAA 204467 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 52 29 98.4 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGACTTGAACGATTTTATCGTATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGTTTTTTGAAGATTTGAAAATTGCTTGGTTACAGGGATCTTTTAAT # Right flank : CATAAAATTAGGCGTACTGGGTGTCAAAGTTAAGATCTAAATTAATTTAAGGGTGCAGCACCGTTAATTAGCCCTGGTTACTTTTGACAAGTTAAGTCGCTTTCCTTAAAATTAAATTTATCTTAGTGATTTTTAATTAAGGAGGAACGCCCCGATGACGAACTTAACTAACTTGTCGCCCGCCGAGTTTCGCCACCTGGTCCGGACGGGGGATTTTACCAGCTCGACTAGCGGCTACTGCCCCGGATACACCCAGGCCAACCTAGTGATCGTCCCGCAACGTTACGCTTACGACTTCTTGTTATTGGCCCAGCGGAATCCACGCCCCTGCCCGGTTTTAGAGGTCAGCGATGCCGGCAGCCGGGGCTTAACTAATTTTACTACGGATGTCGACCTGGCTAACGACTTTCCCAAGTACCGGGTTTATCGGGGAGGGGAGTTAAGTGAAGAAGTAACGTCGGTCGAACGCCTGTGGCAAAACGACTTCGTTTCCTTTTTGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2640-1708 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZH01000080.1 Limosilactobacillus fermentum strain FUA3589 1900, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 2639 35 100.0 35 ................................... GCCGCTACGATGGAACCTGTAACGTCAAGTGTACC 2569 35 100.0 34 ................................... GCTAAAACAATCGCCGAACTTGATCAAGTGCAAG 2500 35 100.0 34 ................................... GATTATCCGGACTGGTGGTTATCATGACAGACCA 2431 35 100.0 33 ................................... AGGCAGGTAGTAGTCAAGTATTTGGTCGGCTTG 2363 35 100.0 36 ................................... AACTTCCCACTCGGCTCGTATGTGACTAATGATGGC 2292 35 97.1 34 ..................A................ AATCAGCCTCAGAGCCAACCTAATCAGGAGCCAC 2223 35 100.0 34 ................................... GCTGACGCTGTATCGGTGAGCGACACGCCGATTT 2154 35 100.0 33 ................................... GAAAAGTATCTCCGACGGGCTGGGAAGAAGACA 2086 35 100.0 36 ................................... TTTGAAAGAATTCAAGGGATGACTCCTGGTAGTCTG 2015 35 100.0 33 ................................... TACTATGATTGGCAAGAAGAAACGTTCACGGAT 1947 35 100.0 34 ................................... AGGAAAGTGATCCCGCTGTTAGTTTGAGTCCCGG 1878 35 100.0 33 ................................... AGATGACTTCGGTACTGAGGGCGGTCTAGTCAG 1810 35 100.0 33 ................................... GCTAAAAAACTGATCGAAAATGTACCGACCTAT 1742 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ==================================== ================== 14 35 99.6 34 GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAC # Left flank : CGAGGCGATTTGGATGAATATCCACCTTTTCTCTGGAAGTAGGTGCTTTAAATGTTGGTAATTGTTAGTTATGATGTAAATACAGAAGACCCAGCTGGGAGAAGACGATTGCGTCACGTGGCAAAGATTTGTAAGGATTACGGTCAACGGATTCAAAAGTCAGTATTTGAATGTAATGTTGATTCCACTAAGCTTACTGTCTTAAAGCAACGTCTTCTAGCGGAATATGATGAAGATACAGATAGCCTATGTTTCTTTAATCTAGGTAACAAATATCAGAATAAGGTAGGCCACTATGGTTCTAATTCGGTGGTAAACTTAGATGAACCGGTAATATTCTAGTATTATCAGTAGTGCGAACCTAAAGTGAACATAAATTCTTTAAGGACTCGCACCAGAATTTTGGTGATTTTATTCAAAAATCACACTAACAGTTGGTTTTTCAGCTGTTTGACACCCAATATGTAGAAGATGGAGTTCTCTATTTGCTATATGTTGCA # Right flank : ACTTAAATGAGCCGGTGGTTTGGTCCCAAGTTGCCCATCATTTTGTTCATAAAATGTCTTTTTGGCCATTCTTGGCACCTCCTTCCCGGCTTTTGGAGCCCCCCCGGTGGAATTTTGAAAAATAATGTCTCCGTTTAAAACGACGGCAATGTGTGCGCTCTTTTTTGTAGCGGTCAGGGGGCGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGAAAGGAACTTCATTATGCCAAAGGTTGAATTAAATTTAGAAGATGACGAATTAAAGGAGCTATTACTAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //