Array 1 33426-32408 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPO01000009.1 Phocaeicola dorei strain TM05-24 TM05-24.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 33425 33 97.0 34 ................................T GAACAGCATAAACCTGGAAATTAACATTACACAA 33358 33 100.0 32 ................................. ATCAATTCAGGAACTACACTATCCTGCTCAAA 33293 33 97.0 32 ................................G TTGATGTTAATAACGTTAGACCAACCTCCAAT 33228 33 97.0 33 ................................C TTCCAACGCTGTAAGTACTCCGTTGCACGGATT 33162 33 100.0 34 ................................. CCAATTTTCGCCGTAAACAACTTTTTGCTAGACA 33095 33 100.0 33 ................................. AATTAACACTAGTACCATAAATAAGAGGATTTT 33029 33 100.0 33 ................................. GATATAGCCTTACGAGCCTGAGCAAACGTCGCC 32963 33 97.0 31 ................................G ATGCACGGTTATCCAGACACCTTTGTAAGTC 32899 33 97.0 33 ................................G ATCAGGGCCTAGGCGGCCGGCCGGTGTATATCA 32833 33 100.0 33 ................................. ATGTCAATGGAAGTCTTTCCCGGCTGTACAATT 32767 33 100.0 32 ................................. TGGATGTGTAATATATATAAACTGTATGAGAA 32702 33 97.0 32 ................................T TTAAAAACAAGAGCTATGGAAAGAACAAGATT 32637 33 100.0 32 ................................. TATCAATATGGATTTTACAAAGCCCGTCCAAG 32572 33 100.0 32 ................................. TGGATGTGTAATATATATAAACTGTATGAGAA 32507 33 97.0 32 ................................T TTGATTACTTGTTTTACTTCTGCTTCCATAAA 32442 33 84.8 0 ..........G.......A.A.......G.G.. | AA [32424] ========== ====== ====== ====== ================================= ================================== ================== 16 33 97.7 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTCTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCATGATAAGGCCTTGTAACTGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGCCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGAAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //