Array 1 275192-275552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJAT010000009.1 Murimonas intestini isolate MGYG-HGUT-00135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 275192 32 100.0 33 ................................ AATGCACCAGTTAATAAGTGGTGCAGGAAAATG 275257 32 100.0 33 ................................ AGTGCCATTATTGATGTGTCACCGGCGTACTCA 275322 32 100.0 34 ................................ GAAGTACACGCCCAGACTGTTAAATGCCATCTCT 275388 32 100.0 34 ................................ AAATCTTTTGTAGCAAAATATTTGGATGCATGAA 275454 32 96.9 35 .................G.............. TTCCCATTGGCCTTGTAGAATAGGGAGTTGATTGC 275521 32 78.1 0 ............AC......AC.T..A...C. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.8 34 GTCACTTCCTGTGTGGAAGTGTGGATTGAAAT # Left flank : AATAAATTAGATTTTGAAAACTTCTTTAAGTCATCTGGGCAATTTAGTGAAGAAATTCCCAAAGCTTTGAAAATAATGGCTAATTGGGAAAAAAGACCGGAAAATGTTAATTATCCTATAGGAGAGGACAAGACTGTCAAAAGCCAGGGAGAGAATAATGCAGCTGCCTCGCATCAGTGGTTCCGCCTGAATAAAGGAAAAGACAACTTCAAGCCAAATTTCTCAAAAACTTTACCTGCTGCAGAAGATGATGCAAATAACAGATTAAGTCGAAAGAAAGCATTGTATAGACTCATAGAAAAAGAAAAATAAATGTCAGGTGCGAATATGGAGTAAACATAGATTTGCCGAGAGATTCGCACCTGAACAAAGTATAAAAACCTGGAACTAGGTCAAAAGAATTGAATATATTTTAAGAAATAGTTGCATTTTGAGAGAAAAGAGGATAGAATTTAGAAGAAAGGTACAATTTTTGTAGAAGAATATTGTATATATTTGCT # Right flank : TACTAAGTATTTTTTTAACAATGCACCTTGTAAGCCAATATAACACTTATCTTTGGTGCCCAAGCCGCTGATATGTATATTCATGTGATGCCGCTTTTCTCGAAACCATGCCGGATGGGGGCAGGTGAAGGATGAATCAGGAAGTATAATAAAATACAGAAAAGGTGAAAATATTAAAGTAATAAGAAAACCAAAATAATTCAAAGAGGATGTGTTTGCTGCTGCAAATATGTCCTCTTTTTAGAAAGAGGATATTCTATGGATAATCAAAAAAAGATACCTAATCGGCTGATCAATGAAAAATCACCTTATCTGCAGCAGCATGCATATAACCCTGTGCAATGGCATCCCTGGGGCAAGGAAGCGTTTGAGAAAGCCAGGGTGGAAAATAAGCCTGTTTTTCTTTCCATCGGATATAGTACATGTCACTGGTGCCATGTGATGGAGCGGGAATCATTCGAGAATCAGGAAATAGCCGGGCTTTTGAACAGGGAATTTAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCTGTGTGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 460934-459866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJAT010000002.1 Murimonas intestini isolate MGYG-HGUT-00135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 460933 31 100.0 33 ............................... CCGATTCCCTGCGGGCCTGTAAAAATGGGCATA 460869 31 100.0 33 ............................... AACTCCCGGACCCTTAAGTTTGATTTTTCCAGT 460805 31 100.0 35 ............................... CAAGTGCTGCCATGATCTTAGGTCCCTCCCTCCTT 460739 31 100.0 34 ............................... TGCCTGAAGGAGGCGGGATCAGATACATTTGTTC 460674 31 100.0 33 ............................... TAACTTGATGGCGCCTACTACTGCCATGCAGGG 460610 31 100.0 33 ............................... TGTTTAAGGACACCAACTCTCCTATACGGATTC 460546 31 100.0 34 ............................... ACGTCGTCCTTTAGCTGCACTGTGTCTCCCCAGT 460481 31 100.0 33 ............................... CGTGACAGGTTCAGTCTGCGGAGGGGGCGCAGG 460417 31 100.0 34 ............................... ACCAAGCTTTATAGCCTGATTATACATATCATCG 460352 31 100.0 35 ............................... TTTTAACGGCGTTGTTTATTATGGAAGAGAATTAG 460286 31 100.0 33 ............................... CCATAATCACGCACTTTTAAGTTATACATTAGC 460222 31 100.0 33 ............................... TGCCAGGTTTCTGAAGGTGCATATTTTTCTTAT 460158 31 100.0 34 ............................... CTGAAGGATATGGTACAAACTTTTTAGGAGCAGT 460093 31 100.0 35 ............................... CAAATGCCACACAGTTGATAAAATCAGCAGTTGCT 460027 31 100.0 35 ............................... TGTATGTGCAAGTCTTTTCGGCGTAAATGCTTACC 459961 31 90.3 34 ......................A.A.A.... GTAATGGGTCAAAGGCAGCCAACAGGACAGCTAT 459896 31 71.0 0 ....T.G...CA..A....A..A.C....T. | ========== ====== ====== ====== =============================== =================================== ================== 17 31 97.7 34 GTCGCCACTATGTAGTGGCGTGGATTGAAAT # Left flank : AGGTATAGACCTCCATGCATCTCATAGTTTAGATCCTATAGACGGGGATGCTTCGCACGATACATAAATAGATGAGAGGTATTTAACTCCTACTGTCATATCACATAGCGGCAGTAAGGTTATATATATTGCAGTGCTAGCCTAGGGGAGGTTTTGTTACAGTGTGTTGGATTATTGATTATTATGAGATGAATTACAATATCTATATCTGATCTTGATGTGATCAGACAATCGTTGAAAAAGATGATTGTATGAAGCGGATATATTGGAAAGTGTAGTATACAGGTGGAAAGGTTGAAGTTCTAAGTATATGTTAGCGCTGTTTCCTGGTGCGAATCTTAAGTGAACATAAAATCCCAGGGGGATTCGCACCAGAAAATGTGTTATTTTGTTGGTGCAGAGCAAGAAAAATAAAATAAAAACCTTTAAATGAAGAACTTTTTGTGTTAAAATTACAGAAAATATACAAATATTGAAGTTCATTTTTGGATGTTTTTGCT # Right flank : TCAGCAACTCAGCCAGAATACATTAATGCAGATTGCATTCTGTTAAGTATGCTAATAACGCAGTCTTCATTAACCTTTAACAAATAAAAATGACCTCTATTAAAATTAAATAGTACTAGTACTACAGCGTTCAAAAAAAATTAGCCAAATAAGCGAGGACTCTACCACCTCTATGTCGAAAGGATAAAACGACTCAAAACAAGCTTAGTAACAGCGAAGGATATATATTCCAGCTGAAATGAAGCGAAAACTATTCCGCCAATTGGAAAAAAGCCAGCAGGACTGTTATGTCATTTTGCGCAGTGTATGTGTTCAAAATATAGAGTAAATAAACACAAAGTATTATGTAATATATAAAAATATAAAATAATAATGTGAAATAATAATGCAGAGGCAGCTGCCTGAGTTTTACATTTATGGATTATGCTGAACGATGCATGGAAAGCGGGGAAGGAATAAGATGAAGAGAAGGATGCTCGGAAAAACTGATTTATCTGTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCACTATGTAGTGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 463891-463089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJAT010000002.1 Murimonas intestini isolate MGYG-HGUT-00135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 463890 31 100.0 33 ............................... CGGTCAAATTGACCGTTCCACGGCAGCTTCAAT 463826 31 100.0 33 ............................... AGGAAGTCGGGGTTGCACGGTCTATCAAGTCAT 463762 31 100.0 33 ............................... CGGTAGTGCGGTTGGTGAGGTGGTCAGGGCCTA 463698 31 100.0 35 ............................... TTCGCATCATCAAGGATATCCAAAATCGCTTCTGC 463632 31 100.0 34 ............................... ATGGCTATGTACCATTTGACAGGCTCCTCATACT 463567 31 100.0 35 ............................... TGTAACTAAAAGGAGATGGCTACTGGGCTGAACCC 463501 31 100.0 34 ............................... ATGTACATAATCTTCCCGTTTATCGCAGAATTGT 463436 31 100.0 34 ............................... TGGTGTTGCTCCTTCCGTTGATTTGGGTTTGGGG 463371 31 100.0 35 ............................... ATACGGCAACTGCCATATATATGTACGGATATCCA 463305 31 100.0 24 ............................... TTGTTTGTGGTCACTTGCTGGTCG Deletion [463251] 463250 31 96.8 35 .......T....................... TTTGTATCTGCAATCCTGGATTTTGTACCAAAACA 463184 31 100.0 34 ............................... TCTCAGGCCAGAGTCAAGCATGAGAGAAATGATT 463119 31 83.9 0 ..................AAC.T...T.... | ========== ====== ====== ====== =============================== =================================== ================== 13 31 98.5 33 GTCGCCACTGCATAGTGGCGTGGATTGAAAT # Left flank : TTCTGGAAGTAGGCGATATTATGCTGGTACTAATTACATATGATGTGAATACGGAGACTTCAGCTGGTAAAACCCGCTTAAGGAAAGTTGCAAAACAATGCGTGAATTATGGCAGGCGGGTGCAGAATTCTGTTTTTGAATGTATACTGGACAATGCCCAGTGTATAATGTTAAAATCAATATTAAAGGATATAATCAATGAAGAGGTAGACAGTCTTAGGTTTTATTACCTAGGTAATCATTATAAGACTAAGGTAGAACATATAGGAGTAAACAAGGGAGTAGAAGTTGATAAACCTTTGATATTCTAAAAGAGTCTGGTGCGAACCTTAAGTGAACATAAAATCATCAGGGGATTCGCACCAAAGAATTCTAAAATTTGATAAAAATGATCAAGAAAAAATAAGCAAAGGCTTGCAGGATTTGGATAAAAGCTGTGAAAATTAGATGTATGTATAAAAAGTATTCATATTGAGGAATGTTTTTTGTGCATTTTTGCT # Right flank : TCTTTTATTCTGTATGGGACATATGCCAGATGTGATTATACAAGGGATTCAGAGATTGACATTAAGACCATAGCAAAAAGGGAAGAGCATTCTAATAAGTAGATACAGACATATCTATTCTCTGTTAATGTTGAAAAATAGGGAGTGAAGTTATTTGATGCAGCGTATCAGCGATATATGCGATGAATGGAATGTGTACAAATGGCATAAAGTAGATTAAAAACAGGTAGGGACGGTGACTATATGACGGAAGAAAAGATTAAAGAAGTGATGGCTAAGTTTTCAGAGGCAGCAAAGGAAATCTATGGAGCAAAATTATATAAGATTATTTTATATGGATCATGTGCTCGTGGAGACTATGAACAGGACAGCGATATTGATATTATGGTTCTGCTAGATGTTCCGCAAGAAACAATTGGTCTGGAGAGAAAGCGTATTTTAGATGTAGCGGATAAACTTGATTGGGATTATGATGTTGTATTGACACCTGTTTTCCAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCACTGCATAGTGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 3 473705-471916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJAT010000002.1 Murimonas intestini isolate MGYG-HGUT-00135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 473704 31 100.0 34 ............................... ATATTATTTTCCTCACTTTCATGCATTAAATTAT 473639 31 100.0 34 ............................... CATCGCTTGTTTTGTGCTCAATCTTTTTAGCCAG 473574 31 100.0 32 ............................... ACTGTCAGGAGCATAATTTCACGGAAAAATAA 473511 31 100.0 34 ............................... GGTTGTTAAAAATGCTGCTAAACAGGTTACTGGT 473446 31 100.0 34 ............................... TACTGTCAATTATCACTATCTCCTTCAGGCTCAT 473381 31 100.0 34 ............................... CCTGTAGTGTCCTTCAAAAACTCGCTGTCGTTGG 473316 31 100.0 34 ............................... ATACGGAGATTGAATGTATCCATAAATTCATTTA 473251 31 100.0 34 ............................... CTCTCTGCTTAGCTGCCTCGATAGCAGCATTGAT 473186 31 100.0 32 ............................... TGCAAAAGCCGTCTTACCCACAAGCTTTTCTA 473123 31 100.0 33 ............................... TCCACCGCTGCCATAATATTTTACTGCTATGTT 473059 31 100.0 35 ............................... CAAAAAGAATACTAAGCTTATCGCCGCTTAATAGC 472993 31 100.0 34 ............................... ACATGCCTCCGGCCATGATTGACGGGGGAGCAAC 472928 31 100.0 36 ............................... TTGGTATTTGTTGTTGTCTTGTTTGTTGTTGTTGTG 472861 31 100.0 34 ............................... TCCGCGCTTGCGGTTGATTTCCTGTGCAACTTTG 472796 31 100.0 33 ............................... CCGTTTTGCATGCCATTTGATTTAGTCCGGGCT 472732 31 100.0 35 ............................... CCCCCTTAAATAGGTTTACCTCTATTTCATGTGGT 472666 31 100.0 35 ............................... ATATTGCAGCCACCGGAGTGCAGTTATGCCTCCGT 472600 31 100.0 34 ............................... TGTTAGCACGGTTGCAACGTAGATAGTCATTTTC 472535 31 100.0 35 ............................... TGACTGATCAAGAGAGTAGCTGATGTGTGGCGTAG 472469 31 100.0 35 ............................... AGGTGTTGCTGCATTGGCAGATGAGTCGGTGGTGG 472403 31 100.0 34 ............................... AAATAATACTCGATTATAAATGGGACTTTATGAA 472338 31 96.8 36 ..........T.................... TTTTTATGTGCTTCCTGATATGTAATCAGGTTTAAG 472271 31 96.8 35 ..........T.................... ATAAGCTTTTCACTGTTGTAATCATCGAAGCGAGT 472205 31 93.5 35 ..........T........A........... TCCTAATGTATCCGCCACTGCCGCCAGCGCTTCAG 472139 31 96.8 33 ..........T.................... TGTCCCGTATGATTATAACGGGTATTTTGAATC 472075 31 96.8 33 ..........T.................... TAACCTAAGGCCACCAAATCCTTTCTGTTTTCC 472011 31 96.8 34 ..........T.................... GCAAAATAGCCTGAAAAAAGGGGTCAGTTGTCTG 471946 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 28 31 99.2 34 GTCGCCACTGCGTAGTGGCGTGGATTGAAAT # Left flank : ATATCTGAGTATATCCAGATTTACTGCCCTTAAAAGAAAAAGGAGTGTGATAATTATGAGATTGATAAAAGTACAGAATACGTTAAAGAAAATGAATCTTCAGTTTGAGTATACAGAAATAGAAGGATGCGGCAGCCTGGATTTTGAATATAGAGGTTTGAGATATCATATCTGGGAATTCCGTGATGGTGAATGGGGAGTTGAGACGAATATACGTCAGGGAGGAAAAGACGAAGAGCTTCTGGGCGAATATGAGGACGAAATAGTTAAGATATTGGGAGAATGGAAATAACAGTATTATCGTAAAGCAAAACGCTATGTGATGTGAAGTGCGAATAGTAAGTGAACATAAAATTCCCGAGGGATTCGCACCTTTTTTGTGGTATTAAGGATATGATTTTTTAGTCCTGGAGGATGAAATTGGTTGAAAAAGGCAGAAGTATTGTGATATAATACTAAAAACGTATTTATATTCCAGGAGGAATATATGCATTTTTGCT # Right flank : ATTGATAAGGCAAGGCATAACTTTCGGAGTTCCGAGTCGCCACTATATAGATAGGGACTAAACCTGTTGGTATAAAGTGATGCTTTTACTGCAAAAGATTGATATTATCTGAAAGTACATCATGATAAATGCAAAAAGATACAAAAACATACAAAAATATAAGGGAATTAGTCAAAAAAATAGTTGAAAATCACCAAAAAAGTGCTATACTTAAAAATGAATGAGTCGTGTAACTTGATAACTGAATAAAGTGTGGGAGGAGTCTATGTATTTAGCACATATTAGCAAAGATAAAGCAAGAAAACAGTCAGTATGTGAACATTTAAATGGTACAGCTATTCTATGTGGTGAGTTTTCCTCAAGTTTTGATTGCAGGGAGTGGGGATATGGAGGTGGTTTAGTACATGACATTGGAAAGTACAGTAAAGGATTCCAAAAGCGGCTTTTGAATTGTGGTATAAAGGTAGACCATGCAACTGCCGGAGCAAAGGAATTATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCACTGCGTAGTGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 4 549346-548732 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJAT010000002.1 Murimonas intestini isolate MGYG-HGUT-00135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 549345 31 100.0 34 ............................... AGAAATTCAAAAGGTTTATATTTCGTCCCTTGTA 549280 31 100.0 33 ............................... ATCGGATACCACAAATGCCGACAAAAGAAAAGA 549216 31 100.0 34 ............................... CTAAATTCTTTGCTGCTGTGGCAACCGTTGTCCT 549151 31 100.0 34 ............................... ATATATCAGAGGAATCAGAACTATCGAGGGAAGA 549086 31 100.0 33 ............................... ATGTGAAGAATTTCATGATTCAGAAGATTAAAG 549022 31 100.0 35 ............................... CATACCATCAGCCTCCTAATCTATAATGCCTTGCA 548956 31 100.0 34 ............................... CGCTCCATACCCCTAAAGTTAATATTCTTATCGA 548891 31 100.0 34 ............................... TTATTGGAACGGTCGATGTTTGATAAACAGCTTT 548826 31 100.0 33 ............................... CACTCTCTCACCTCCACACTATCCATATAACAA 548762 31 96.8 0 .........................C..... | ========== ====== ====== ====== =============================== =================================== ================== 10 31 99.7 34 GTCGCCACTATGTAGTGGCGTGGATTGAAAT # Left flank : GTCTTATCAAGGCTCACTCAATCATAATAAAATCGTGATAAAATAGTTGCTTTTTTTTATTGATGAATAGTCCTTAAATACTGTATTTTCGCAGATGATCGGATTTTCTATTTTAAGTTTGGGGTAATATATGCAGTATTAACCCAGGGAATGTTTTGTTACAGTGTATTAGATTATTAATTATTATAGATGAATGCCAATATTTATATTTGATTTATATGTGATCATATAATAGGTGGCAAAGATGACTGCATGGGGCAGATATGTTGGAAAGTGCAGTATGCAGATTGAAAGGATGAAGTTTTAAGTATTTGTTAGTGCTGCGTTCTGGTGCGAATCTTAAGTGAACATAAAATCCCCGGGAGATTCGCACCAAAAAATGTACTATTTTGTTGGCGCAGAGAAAGAAAAATGAAATAAAACCTTTAAATGAAGAGCTTTTTGTGTTAAAATTATAGAAAACATACAAATATTGAAGTTGATTTTAGGATGTTTTTGCT # Right flank : TCAACAGAAGAATACTCTGCCATCCTGTATGACGTCGCCACTATGTAGTATAAGCACGGCAATTCAAAGAATGACAGAACCGGAGGATTATTTATATTCCGGCTTTGTTATTTGTCTGCTGTTTTTGTAGAAATGTCGAAGTTCAAATTTGGCATACTGCACAAAAACATCTAAAAAATTCACTTTTAAATATTCAAAATTCCTTTTTTCCATGTCTTCCTTTCTGATTTTCTATGTACTGAAATCAGGAGAGGAAGTATAATTAAAACATCTTAAATAACTCCCAAGAGTATCAGGGGTAATAAAATAGTGGCCATTATTTTTCTCTTTCTAACCGGGAAGTTTTTGATGTGATACTAATAATTTATATGATTTTATGGAGGAGAGGCAAATGAAGAAAAAGTTAGCAGTTTTAGCGGCAGGAGTTCTGGCTCTGCAGGCAGCGCTTCCTGTCAATGCCAGCGAAGCGGCGGATAAATCTTATGAAGGTGTGACTCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCACTATGTAGTGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 5 726380-725817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABJAT010000002.1 Murimonas intestini isolate MGYG-HGUT-00135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 726379 33 100.0 35 ................................. AAAGTTGACCGCAACACCATCGCGATGCCACGCCC 726311 33 100.0 33 ................................. TATCCAAACATCATACGGTATCTTATCCTCCTG 726245 33 100.0 33 ................................. CTCTAACCGGTACTCAACTGCAGGGCTGTTATC 726179 33 100.0 33 ................................. GGAAATAATCTTTCCTGCTGCCAAATGGTTTCT 726113 33 100.0 33 ................................. CCTTTCCCAGTCATTTAATTTTACCAGATTTAC 726047 33 97.0 34 .................C............... TGATCAGAAATTTTGATAGAGATATTTTTACCTT 725980 32 93.9 33 ...........C.....-............... GGGTGATCAAGAGGGACTTTGTATTTATCAAAC 725915 33 93.9 33 ...........C.....C............... CCCATGTCATAGTCTGTGGCACTTCTCCATACG 725849 33 90.9 0 ...........C.....C....C.......... | ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GTCGAGGCCTGTGAGGGTCTTGTGGATTGAAAT # Left flank : GGCACAGGAAGTAATGGAAAACGAACTTGTACAGAAAACAGATGCATACAAAGAAAGAAATATTGTATACCTGACTCCAACGGTATGGTATCTGGCGGAAGGCGGAATCACCGCCATGGATGTCATGCTCAGTGACCTGGAGGCCGGGATTCTGGGAAAATAAAAAAGAAAATGTGAATAGTTAATCAAGAAAACAATAGGTATCCTGTTTGCAGATAGAATACTGCAGATAGGATTCCTGATTGAGCTAATATGAAGTTGTGATGGATATTGACCTGGTACATTAAAGTAAGAATGTAGAAGTATACTTTAGTTTTGTGAGTAATCAGGTGCGAATGTGGAGTGAACATAAAAATCCTGAGTGATTCGCACCAAAAATTGAAAACTTTACATACCGGATAAATATGGAATAAAAATAATATCGAAAATTATTAGAGGGATATTGTAGAAATGGTATAAAAATGGTAGAATGAGATGGGAAGTGGTTGGTAATATTTGCT # Right flank : TACAATAAATTTACCTTTGAACTTTATCTATATTAAGTGCAGCATGCAAAGAGATATCACGCATACCATACTTACCAGCCCATGATTTTATAATGGGATTAGTTCACCGCTCTGGAAGTTCTTTGTATTTTTAACTCTTTCTCCATCCATTTCTACTGAATAATTTAATTCTCTAATAAAATACGTACATTTCCATGGTTTCCATCCAGCCCCCCTTCTCAAAATCGGTCAGTCATAGTAGTATAGAGAAAACAGACCGGAACGGTCAGTGTACCGGAAGAACTGAATTATTTACACGGGGAGGAGTCATATGAACAGTGGATTTTTTACGCTGCCTCAGGAGAAGCAGCAGGCTGTTATAAATGCAGGGTTTAAGATTTTTGCGCTGTATCCTTATAATAAGGCGCCGATGTCCGAGATAGCGGGTGCGGCAGGAATATCCAAATCTCTTTTGTTCTATCATTTTAAAAATAAAAAGGAATTATATATTTTCCTCTGGC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCTGTGAGGGTCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //