Array 1 6014-3771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWTM010000009.1 Acinetobacter baumannii strain 18A2278 ctg_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6013 28 100.0 32 ............................ TGCTGAGTGAGTTGGAACATACCCATCTCCAG 5953 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 5893 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 5833 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 5773 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 5713 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 5653 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 5593 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 5533 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 5473 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 5413 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 5353 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 5293 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 5233 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 5173 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 5113 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 5053 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 4993 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 4933 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 4873 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 4813 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 4753 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 4693 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 4633 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 4573 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 4513 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 4453 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 4393 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 4333 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 4273 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 4213 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 4153 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 4093 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 4033 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 3973 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 3918 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3858 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3797 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11104-15935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWTM010000009.1 Acinetobacter baumannii strain 18A2278 ctg_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11104 28 100.0 33 ............................ CCATAAAAAAACCGCCCTAAGGCGGTGGCTCTA 11165 28 100.0 32 ............................ TTCCATTGTTTTGGATTTTCCAGACAGCCAAT 11225 28 100.0 33 ............................ CTTATTCGCATTAATCACAGGAAGACTTATGGA 11286 28 100.0 32 ............................ TAACGAGCATGGTTTAGATTTAAGAGATGGTA 11346 28 100.0 32 ............................ TTTTGAACTTGTGCATTCTCAATGATTGTTTT 11406 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 11466 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 11526 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 11586 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 11646 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 11706 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 11766 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 11826 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 11886 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 11946 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 12006 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 12066 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 12126 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 12186 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 12246 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 12306 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 12366 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 12428 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 12488 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 12548 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 12608 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 12668 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 12728 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 12788 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 12848 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 12908 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 12968 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 13028 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 13088 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 13148 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 13208 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 13268 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 13328 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 13388 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 13448 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 13508 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 13568 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 13628 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 13688 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 13748 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 13808 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 13868 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 13928 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 13988 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 14048 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 14108 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 14168 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 14228 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 14288 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 14348 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 14408 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 14468 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 14528 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 14588 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 14648 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 14708 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 14768 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 14828 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 14888 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 14948 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 15008 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 15068 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 15128 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 15188 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 15248 28 89.3 32 ....T.......AT.............. TGCAGCTACTCGACATGTTGGTAGGGCAGATG 15308 28 89.3 32 ....T.......AT.............. CAGTCGGCTGGTGCTAATTGAATAAAATCGTT 15368 28 89.3 32 ....T.......AT.............. AGATTGAGGCGATTTTTATCGCGGACATTGCC 15428 28 89.3 32 ....T.......AT.............. CAGTCCCCGCTTTGAAGCATTCCCATCAGTAC 15488 28 89.3 32 ....T.......AT.............. TCACAGCTATCGTCTGGCTGCCGTCGCGTAGA 15548 28 85.7 32 A...T.......AT.............. TTATTATTAAACGGGAAAAGTATATTCTTGCT 15608 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 15668 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 15728 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 15788 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 15848 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 15908 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 81 28 94.3 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.68, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //