Array 1 361920-363351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBI010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 288 A NODE_2_length_542223_cov_32.9173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 361920 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 361981 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362042 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 362103 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 362164 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362225 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362286 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362347 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362408 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362469 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362530 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362591 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 362652 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 362713 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 362774 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 362836 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 362897 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 362958 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363019 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363080 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363141 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363202 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363263 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363324 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379483-381569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBI010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 288 A NODE_2_length_542223_cov_32.9173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379483 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 379544 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379605 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 379666 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 379727 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 379788 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 379849 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379911 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 379972 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 380033 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 380094 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 380155 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 380216 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 380277 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380338 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380399 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380460 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380521 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380582 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380643 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380704 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380765 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380826 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380888 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380991 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 381052 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 381113 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 381174 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 381235 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 381296 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 381357 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 381418 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 381479 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381540 29 96.6 0 A............................ | A [381566] ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //