Array 1 77394-81776 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKU01000003.1 Bifidobacterium adolescentis strain AM14-37 AM14-37.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 77394 33 100.0 34 ................................. AGTCTGGTGACACGTTGAGTTCGATTGCATCACG 77461 33 100.0 33 ................................. ATGTTGCCTGAACTATATCCGGTGATGTTGTAC 77527 33 100.0 32 ................................. ACTTGGCACCGCCCTTACTGATGGCCTGACGG 77592 33 100.0 34 ................................. ATATAGATTATTGGCTTGGTACCCCACGCGGCCT 77659 33 100.0 34 ................................. TTATACCTGATTGTTGCAATAAGCCGCCAAGAAT 77726 33 100.0 34 ................................. TCCAGCTACCTTGCCAGCGTTTTGAGCGGCCACA 77793 33 100.0 33 ................................. AGTAAAACGTTCGACGGGATTAGCGAACTGGCG 77859 33 100.0 35 ................................. TTTCAATTCGTCTCTCGATTCGGATTTACGCTACG 77927 33 100.0 34 ................................. ACTAACGATTATGTTTCGATGGTTACGGCGGCGG 77994 33 100.0 35 ................................. ACATTCTATCCAACTGTGGGTGATATGGATTACAC 78062 33 100.0 34 ................................. TTCCGGGGATACCCGTGATGAAGCCCACTGCCTC 78129 33 100.0 34 ................................. TCTCGAATTTGAGTTTGCAATTGGGTGAGCGCTT 78196 33 100.0 34 ................................. CAACATGACGTCACGTTTGGCAGCTGCTATGTGA 78263 33 100.0 33 ................................. TTGGACTTGACGTCGCCGCCGATGGCGATTGGC 78329 33 100.0 33 ................................. AGAATCGACTACCACGGTAAAACCTACACGCGA 78395 33 100.0 34 ................................. GTTTGATTGGGGTCGCAATTCCATCACGGTGGCT 78462 33 100.0 34 ................................. GTTTCGCGCGTCCGGTTTTGATACCGAGCGCAAG 78529 33 100.0 35 ................................. GATGACTCCATCATGGAAAGCAAACGTATTGTCCG 78597 33 100.0 35 ................................. ATGACAGTCAACAATGGCTCGGCATTGGCATTGGC 78665 33 100.0 35 ................................. ACAAACTGCACGATGGCGAAATACGGACTGCCGGT 78733 33 100.0 35 ................................. CATAACGACGAGCCACGCATCACGCCACGTGACGT 78801 33 100.0 33 ................................. ATTCCGCTGCGTTTCCAAAATGCCACGTCACCG 78867 33 100.0 34 ................................. AGATTCTCAATGTCGAAGTTAATTCCGTGGTCAA 78934 33 100.0 35 ................................. CCGGTAGCATCTGAATAAGCTGCGGCAAGGCTTCG 79002 33 100.0 33 ................................. GTCCAGATGTTCGGCCACCTCCTGTACATAACC 79068 33 100.0 34 ................................. TCCATAGTTATGGCAGTTACCGAAAATTGTATCA 79135 33 100.0 35 ................................. AGCATGACGTCACATTCGGTAGCTGCTATGTGACG 79203 33 100.0 34 ................................. CCTATGACGATTTTCTGCCGGGGTCACGCCATGT 79270 33 100.0 36 ................................. CTATGAAGTCAATATTGAAGGCGTAATCTCTACTAC 79339 33 100.0 32 ................................. GCCACGCCTGTCACATAATCGATGGCAATGAA 79404 33 100.0 34 ................................. TACGCGCCCCTCACCGACAAGGACAAGGCCCGCA 79471 33 100.0 33 ................................. CTCATGCCCGACGCGACCATGTGGTCCGCCAGC 79537 33 100.0 34 ................................. ATTTTTCACCCCCTTTGCTTGAAAATCGAACGAA 79604 33 100.0 34 ................................. GCATTTAAGGAGACTATTTTGACTCAGATTCCAG 79671 33 100.0 33 ................................. TGATAGTCGCCTTGCGCCGCATATGAAGCCAGT 79737 33 100.0 33 ................................. AAGGCAGGTGGCACCATCTACCGCAAGGGCGGT 79803 33 100.0 32 ................................. AAACCGGCAATCTCATGCTGCAGGATGGTCAT 79868 33 100.0 34 ................................. CCACGGCAATTTCCTGCCACGTGTCGCCATACGC 79935 33 100.0 34 ................................. AATGTGACCTGGTAGGCCGCCAGCGTGCCGGCTC 80002 33 100.0 35 ................................. GGCGTCACCACTGGGGTAGTTGCCATGATAGTCAT 80070 33 100.0 33 ................................. CTCTCGAATCGCAGAAGGACCGCGACGGCATCA 80136 33 100.0 32 ................................. GATAAAACCATAGAAACCGCCACGGTACGCTT 80201 33 100.0 33 ................................. CGACAGCGGAACGTGCCCCGCCATGCCTGGTGT 80267 33 100.0 33 ................................. CAACACAATCGAGGTGTTTTAGAAATGCGTAAG 80333 33 100.0 35 ................................. CAGAAGGAGGCACGCGACCTGATCGCGACCGGCGA 80401 33 97.0 33 .............T................... GTTCGATAGTACAAATGTTCGTTCGCACAGTTG 80467 33 100.0 35 ................................. ACATTGCCAGACAACTTTTGCGCCGGCTTTTTCGA 80535 33 100.0 33 ................................. CCAGTGGGAGTCCTACGAGGGCACGTATCTGAT 80601 33 100.0 34 ................................. AGTATGGAAAGTATCTCCTGCGCGGGCTCCGACC 80668 33 100.0 35 ................................. CATGTCGCCCCGGAGAACGGAGAGGGATGGAACGG 80736 33 100.0 38 ................................. CGACTCGCCACCCACGGAGCCGTCAACACCGAGAACAC 80807 33 100.0 34 ................................. CGCAAGTCCAGCGTCATCCTCGACTCCCTCATCT 80874 33 100.0 34 ................................. GGCGTCGCATCCATCAAGATGGCCGCCGACTTCG 80941 33 100.0 35 ................................. GCCGAAGTCCGACATGTCGCCAACGGCCTTGTCCG 81009 33 100.0 34 ................................. GAAGAGCATGTCGGCCTGCTCGATGGCCTCCTGC 81076 33 100.0 32 ................................. GCAAAGATAGACCGGCTGGTCGTGGCGCTCGT 81141 33 100.0 34 ................................. CTGGATAATCTTCTCCCCGATAATCCGGCCATAC 81208 33 100.0 34 ................................. GCAGAATGTGGGCAAAATGTGGGCAAACGTGACG 81275 33 100.0 34 ................................. TTATTGACCGCCGTCTGACGTATGCCGCGAAGCG 81342 33 100.0 35 ................................. ACCGGGGACACGATGTCACGCGATTAAGGCGACTC 81410 33 100.0 34 ................................. CACACGTCGTATACCACCCATTCGGAGAGTGGAA 81477 33 100.0 35 ................................. ATCGACCCGACCGACTGGACCACCGTCAACGACTC 81545 33 100.0 34 ................................. CAAAACACCGGCTTGCCGTCATCGTCCACGCCGA 81612 33 100.0 33 ................................. CAATGGGATGAAATGTTGGAAACCACCAATTCT 81678 33 100.0 33 ................................. ACGCCAGCGAACGACCACACGATTGTCACGACC 81744 33 97.0 0 ....T............................ | ========== ====== ====== ====== ================================= ====================================== ================== 66 33 99.9 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TGATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGACACCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGCACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACG # Right flank : TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCTGCATAGGCGGCTGGTCTCCAACAGAAACTGCGCCGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //