Array 1 69674-75755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXJ010000002.1 Bifidobacterium adolescentis strain 1001270B_150601_E2 NODE_2_length_647299_cov_17.1165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================================= ================== 69674 29 100.0 32 ............................. CGGCGAGGACATCGACGACCAGGGACTCGACC 69735 29 100.0 32 ............................. AAGAACACGGCCCGTCAGGTCTTGCAGCTGAA 69796 29 100.0 32 ............................. AGCGAAACGGCGGGCGAGAAATGATAACCGAC 69857 29 96.6 32 ............................T AGCGACACGCAAATGCAAGCGATTATGTTACG 69918 29 100.0 32 ............................. TCGGTAAGTGGAAGATCGCCGCCAAATATGAA 69979 29 100.0 32 ............................. AAGAACTATGCCACGGGGGAGAAGCAGGCCAC 70040 29 100.0 32 ............................. GCTTTCACGTCGTGGCAGCCGACGGTCGAGAT 70101 29 100.0 32 ............................. ACGCGCATCAGTGCGACTTCCTCGCAGTTGAA 70162 29 100.0 32 ............................. CGACGAGGAACTTGCCCAGGAAACATACACTG 70223 29 100.0 33 ............................. TGTTGAATCGGGCGTATCCGTGCGAGGAGTGGC 70285 29 100.0 32 ............................. TGTTGCCGGTGGCTGTGTCGATAAGGTCAAGC 70346 29 100.0 32 ............................. ACGGTGCACTCACCAATAGCAAGTTCCTTGGT 70407 29 100.0 32 ............................. GCCGACTATGTGCTCGGCCCGGACTACCGGTT 70468 29 100.0 32 ............................. TGCGGCAGGCTGGACTGGATCCATGTCTCGGC 70529 29 100.0 32 ............................. ATCAAGCTCAAACTCGACGAAAATGGCGTGCC 70590 29 100.0 32 ............................. TGAACGTGACCATGCAAGTGCTCGGAGACTAC 70651 29 100.0 32 ............................. GCAAGAGTAAGTCACGTGGTCACGGCAGTGTC 70712 29 100.0 32 ............................. TGATAGACGACCTTGTCGTTGGCTTGGAATGC 70773 29 100.0 32 ............................. CGTTTCGAACACGGACGGACATGTTTCACAAT 70834 29 100.0 32 ............................. ATGTGATCGAGATTGAATGAGTCATCTGTGGT 70895 29 100.0 32 ............................. GCAGTGAACAGCCTCTGATAGCATGAAGCCCC 70956 29 100.0 32 ............................. GACTTCGAGCTGGTCAGGGAGAAAGCCCACGC 71017 29 100.0 32 ............................. ACTTACGATTGACGCCGATCTGGACGCACGTC 71078 29 100.0 32 ............................. GTCTGGGTTGGTCATGTAGACGGTGAGTTTGC 71139 29 100.0 33 ............................. AGTCAGCAATTGTCGAACACTTTGGCGACGAAC 71201 29 100.0 32 ............................. CGATTTGCCGCAGTATCTCAATCATATCGAAA 71262 29 100.0 32 ............................. GGAATACTGCAATTTTTGACGTGTCTCGCGCA 71323 29 100.0 32 ............................. GGTGATGTGAATCAGATGGCCAACGATGTTAT 71384 29 100.0 32 ............................. GCCGAGGATGATACCGTGTTTACGCTTATCCT 71445 29 100.0 32 ............................. CGTCCCAGGCGGTTCCGATCGCCATCGACCAG 71506 29 100.0 32 ............................. TGCGCGGATCCGATGCCGTTGCCGCTGAAGCA 71567 29 100.0 32 ............................. AGTACGGCGTTGGCGAACGGATTAGGGGTAAT 71628 29 100.0 32 ............................. CAACCAGGGATCCAGCCGCGCCTACCCGGTCT 71689 29 100.0 32 ............................. ACTTCCCGAGGGATTTTCATCTCGTTCAAGGC 71750 29 100.0 32 ............................. TGGAACACATGGAGCGACCAGCAAGGCGGATC 71811 29 100.0 32 ............................. GGTAAGGTCGAGTGGAAACCGGAAGAGTCTGA 71872 29 100.0 32 ............................. TCCTCAAGGAACACGCACTCTAAACCCACCCG 71933 29 100.0 32 ............................. GCGGCACCACCAGTGATGCCCTTGATTTTCTT 71994 29 100.0 32 ............................. GCAGTGTAGATTTCACCGTCATCGAACCTTTG 72055 29 100.0 32 ............................. GCCGACGCGCTCTGGTACGACGCAGGAACCCC 72116 29 100.0 32 ............................. ACTTCCCGAGGGATTTTCATCTCGTTCAAGGC 72177 29 100.0 32 ............................. AGTGCCGTCCTTGGATCCCGAACGCCCCTTTG 72238 29 100.0 32 ............................. CATGAGTAAGGAAACACTCGAACCGCCACTGC 72299 29 100.0 32 ............................. TGCTCACCGGCGAATTGATGGATATTAAAGCT 72360 29 100.0 32 ............................. GCTTTGGCCTCGCAGTTCGGCCATGAGGTGCG 72421 29 100.0 32 ............................. GATAGCCTGATACGTGCCCTCTTGGTCTGAAA 72482 29 100.0 32 ............................. GTTCATCATCGGCACCGTCGCTTTCGTGATGG 72543 29 100.0 32 ............................. ACGATCGCGGGCATCAACGCGCAGGTGCAGCA 72604 29 100.0 32 ............................. TGCACGATGGCGAAATACGGCCTGCCGGTACG 72665 29 100.0 32 ............................. CATTGGACGCGCACAATCTTACCCAAGTCGGT 72726 29 100.0 32 ............................. CGATTACGGTGGTCAGAAACAGCTGTTCGACA 72787 29 100.0 32 ............................. GACGGCATCCTGCGTTGCGGACTTGATGAAAC 72848 29 100.0 32 ............................. TCCAATTCATTCACAAAATCACTATCACCATA 72909 29 100.0 32 ............................. ACTCTTTTCCGGTTCCAGTCCTTCGACGCGGG 72970 29 100.0 32 ............................. CCGACGTGCACCTCGAGGTCGCCGGCGTCAAA 73031 29 100.0 32 ............................. GGACGGTCCTGCTGGTCGAGCGCGACCAGCAC 73092 29 100.0 32 ............................. TGCACGCTGCCGCAGTTGCGGTTGGCGACGAT 73153 29 96.6 32 .......................A..... ACGCGAACCTCAGCCGCCCACTGACCTTGAGC 73214 29 100.0 32 ............................. TGTTCTGCAATGCGCCGAAGGACGCGTTGAAT 73275 29 100.0 32 ............................. GTGTCGCGTGGCGATCTTGTGCAGGTGGTGTC 73336 29 100.0 32 ............................. GCCGAGACCATCAAGAAGGCCATGAACGACAG 73397 29 100.0 31 ............................. CAGCTGGGTGTGGTCCGGACGAGACAGCATG 73457 29 100.0 32 ............................. GTCGCGGACATGTCATCAATCCATTCATCGAA 73518 29 100.0 32 ............................. ACCGGCCTGTACGCGTCCGGCTGCTGGTTGTC 73579 29 96.6 32 ..........T.................. CCCACAGGCGGGGACAATCAAGGTTCGGACGT 73640 29 100.0 32 ............................. GGAATGTCCGCAATAAGGGCAGGACCAGACGA 73701 29 100.0 32 ............................. CGCAACGTGCCGACGCAGAAGGCCATGGACTT 73762 29 100.0 32 ............................. AGCGAAAACGGCACCAATTACCCATGCCGAGC 73823 29 100.0 32 ............................. ACACTGGATCGTCTTTATGAAGGAGGATACGA 73884 29 100.0 32 ............................. TCGACCGGAGCGCATACCCGGCATTGTGACCA 73945 29 100.0 32 ............................. ATGGCCCATGACTTGGCGGTCACGCAGCAGGT 74006 29 100.0 32 ............................. TATGGACGCTCTACCCGAAACACGTGGCCAAA 74067 29 100.0 32 ............................. GACGTGGCCCCAGTTGATGCTTGCATCCATAG 74128 29 100.0 32 ............................. TGCTAAACCTTGGCGGGTATACAATCACGAAA 74189 29 100.0 32 ............................. AATCTCACCAAGGATGAAGCGCAGTCTCTGAT 74250 29 100.0 32 ............................. CAACGAGAGGTTAATTAACGAACGCGATTGGC 74311 29 100.0 32 ............................. CCGCAGTTCGACCTCGACTTCATCGGCCGACT 74372 29 100.0 32 ............................. ACATGGCTCCGCGACCAGTGGGAGACATGGGC 74433 29 100.0 32 ............................. GGTAGCGGAACCGCTAGCGAAACGTCTGGCAA 74494 29 100.0 32 ............................. TTGGCTCCCTGGATGGTCTTGTTGCCGTCGGC 74555 29 100.0 32 ............................. AGATAAAGAGCAGCTTTGTCTTTCCAACCGTT 74616 29 100.0 32 ............................. GGACTCCTGCAAGGCATCGTCGCAAGCCTGCC 74677 29 100.0 32 ............................. TTGTGACTTTGGCCGAAGCTGCTACCCCGGTT 74738 29 100.0 32 ............................. GACAAGGTGGTCTACGAATTCGCCACGAAACT 74799 29 100.0 32 ............................. CGTGCTCAAGCCTTGCAGAAAGTCTTGCACAA 74860 29 100.0 32 ............................. GTCGAGATCTTGCATGATTGGCAGCAGATTCT 74921 29 100.0 32 ............................. CGGCTGTGGCCGCAGATGGCCGACTCGGGCAA 74982 29 100.0 32 ............................. GAAACCGTCCAAAAAAACGGTGGCAAAACAAC 75043 29 100.0 32 ............................. ACATCCCAGTCCAATTGTGGCCGATGGACGTA 75104 29 100.0 32 ............................. AACGGCCCGTGCGAAAGCCTCGAAGCGTTCTG 75165 29 100.0 32 ............................. CAACCATCTACAGGGACATTGTAACTGGCTCA 75226 29 100.0 32 ............................. GTCTTACCGAGACCACGCGCACTGATAATGAA 75287 29 100.0 32 ............................. ACGGATAACAACGGCGATATGGTAACGGTGCT 75348 29 93.1 32 ...T.........G............... ACTTAAATTTGGACGTCAGGCGCCCAGATTGT 75409 29 96.6 167 ...T......................... CAACGGTACGAAACGCATATCCGCGAGCTATGGGTGCTCGACATATCGGGACTGCATCAGATCCAACTGAAATAGAAAACCCGAAGATAACCCCCCGACTGATGTTCCAGTCTTGAAAGCTGGTCGCGTGGGATCTTCGAGCAATCCAATTCTACCACCACGGCACC 75605 29 93.1 32 ...T...............A......... CACGACATGCAGGACTACCAGCCACTCGGCAG 75666 28 93.1 32 ...-.......G................. GCGCTCGAAAACAAGCTGCGCCAGCGTTTCAA T [75674] 75727 29 86.2 0 ...T......................TGT | ========== ====== ====== ====== ============================= ======================================================================================================================================================================= ================== 98 29 99.5 33 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : TGGCATGCTGCAAAATGGTATCGCCGACGTTATCGGCAGCCCGATTTGGAGATTGTATGTGATGCAATGGAAGGGGAGGACACATCCGTGCAATCCGACCTTCCACTGAGCTTTAGCTCGACCGGCCGCAAATATGCGGATCGCGTTGTTTATCGGTACCGTATCCCCAATCCGGACGCATCTGAAAATGTCGGTGACAATACAGAGAAACCACCTTCCTTCGATTCTACGGGGGAAGCTGATCCTATGAGTTTCGGCCAGAAATGAGCAGCATATGGCTTTTAAGGTGTATGGGGCTGACTGGTCACCGGTCGATTGCGATGGATTGCAATTGATCAAACGTCCTAAGGAAGCAAAAGAAGGATCCTTTGTTGGCACTCCTAGAAAAGGATGGAGTAATGCGAGCAAATACCGAAAGGCAAGGAAATTTTCAAAACGAAACTGAATGAAAAACAGCCAGTTGTCCTTTCTTTTCCTTGGAATTATGCTATTTTCGAAGT # Right flank : TATTTGTCAATCTATCAGTCGCATCGCATGTGCGTTAGCTACACTTATCCGCATAAGTGTAGCTAACGTTAAAATAAGCTACATTTATCTCGATAGGTGTTGCTTACGAGAGTTTTTGCGATGGATAATAATTTCAGCCATTTCGATATACATGAATCCGTAGGGGCCACAACGACTTGTGTTTCCGATTTACAAGCGTGGCTTTGCTTAAGAACGTGATTTTGTCCGGGGAACGATGCGCTTGACACATACTGGCACTACCAATGGAGGAGCACCATGAAATACGAGATTGCGATTTGCAAAAGTATGAAACGTAAGAAAGGACGCAGTCGCGCTTCGATATGTTTTTGATTGCGTAACGGCGCGACGGCATCGCTTTTGCGCATGTCGGGCGCTTCGTTGCCGCAACCGGCGTAAGATATCTGCGAATGTCAAACATAAGCGAGATATCTGAAGGAGAGAAGATGTCAACAAACGAAGCAGCATTGCCGCAGTCGACG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //