Array 1 418637-420131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031507.1 Dickeya fangzhongdai strain QZH3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 418637 29 93.1 32 ............AG............... TGAGGTATACCCGTCAGCCAGTTGGCGTTGCC 418698 29 93.1 32 ............AG............... CGTTGTCATGAATCTCTGGTGGTATTCGTCAC 418759 29 93.1 32 ............AG............... GGCAGACCCGCCAGCTGGCAGGACTCCGGGAT 418820 29 93.1 32 ............AG............... AGCTGCCGGAATTACAGCCGGACGGACACGGC 418881 29 93.1 32 ............AG............... CTAACCAGCGCATCAAACTGGTTCTGCGTCAG 418942 29 93.1 32 ............AG............... CGGTTTACCTGTTGCCGTACAGATACCGCTGT 419003 29 100.0 32 ............................. CATACGTTGATTCGGTTATTACCGGGGCTGTA 419064 29 100.0 32 ............................. TACGCCAAATACAATCCAGAGTACCAGCATGC 419125 29 100.0 33 ............................. TATGCTAGGTAGCTGGTACTCATGGCAATGAAC 419187 29 100.0 32 ............................. GGCCTTGCTGCGTACGCCCTCACCGAGGCTGT 419248 29 100.0 32 ............................. TGCGCTAGACACAGCACAGTAGCGGTACAGCG 419309 29 100.0 32 ............................. AGCGACCGCGCAGGCCGTAGCCACCTCTGCCC 419370 29 100.0 32 ............................. CCTTCTTTTGAACAACGCACGCATCAATCCTA 419431 29 100.0 32 ............................. CTCATCGCGGCCGACCAGGCTCGTCTGAAAAC 419492 29 100.0 32 ............................. CTGACCGGTATCAAGACGGAAAATCAGGAAAA 419553 29 100.0 32 ............................. GATTACGAACGGCACTTATTCCGAGCGGGTAA 419614 29 100.0 32 ............................. GATGCAGCAAGACAGATATATATTTCTTCCGA 419675 29 100.0 32 ............................. CTACTCCTGGCGAACTTCCTCTTCCTGTAACA 419736 29 100.0 32 ............................. CGTAACATCCTGACCAGCACCTTTATCCCTCA 419797 29 100.0 33 ............................. AGATTCACGAGCTTAACGGCAAAACTTACCTGC 419859 29 100.0 32 ............................. GTTGATGCCATCATTGCAGAAAACGTGTCGCT 419920 29 100.0 32 ............................. CACGTCAACAACGGGTTGTCTGTTCCACCGAT 419981 29 100.0 32 ............................. ACCGGGGCGCGGTGCGTTCAGTTTCTCAGCAT 420042 29 100.0 32 ............................. CGGGCGGCCTCTTTGCGCATCAGCTCAATGAT 420103 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCACCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCCTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTCGAGTTCCAGACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAATGTTCTTTAACAACCGGGTAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGGCCGGTTACGAAAAGCCACTACCCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGAGGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCTGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGGGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAACTCGCTCACTTTGCGCACGCCATCCACAATCCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAATGACCGATAAGCTCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 768116-769183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031507.1 Dickeya fangzhongdai strain QZH3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 768116 29 100.0 32 ............................. CGTTACACCCGAACCACCGCCTGTACTGTGGC 768177 29 100.0 32 ............................. TTGGTGCCCGTAGAACCCACGGAGGAAATGGT 768238 29 100.0 32 ............................. ATGTTATTGCTCTTTTTGGTGATCCATCAACA 768299 29 100.0 32 ............................. GTTCGTCGAAAATTACGCTGACAGTTCTGGTC 768360 29 100.0 32 ............................. GTAGCTCAAGTGACCGAGGCTGTTCGTGAGAT 768421 29 100.0 33 ............................. CCTGAGATCGTCTTTACTCATCGCCCTGCAGGC 768483 29 100.0 32 ............................. GGGGTTAATTTGAATGAGGTAATTACATTAAT 768544 29 100.0 32 ............................. AATAATGAATAATCTTCGATCACTATTCATCA 768605 29 100.0 32 ............................. ATTCGGATGCCGTTGCCAGCATCCGAAAATGA 768666 29 100.0 32 ............................. TTCTGACAGGTTGAGCGCAACCATGTCACGCT 768727 29 100.0 32 ............................. GGACTGATAATGCCAGCGCAACAGAGCAGGAG 768788 29 100.0 33 ............................. TTCTGAACGTCAGTAGGTTTAATATTTTTATCC 768850 29 100.0 32 ............................. CTCATCGCTCAGCTTTTTCCAATGCTCTTCAG 768911 29 96.6 32 .............T............... ATGGCGACCAATCCAACGGTTGCATTAGCTCG 768972 29 100.0 32 ............................. CGTGCTGTGACGCTGAATCAGAATAAAGTTGT 769033 29 96.6 32 ..........................T.. ACTATAAACTGATGCTATAACTGGTGAAAAAT 769094 29 100.0 32 ............................. CTACCGCGATTTTCTGCGCCTTGAACTGATAC 769155 29 89.7 0 .............T...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCTAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCAGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTCTTTAACAACATAAAAAAGTTGGTGGAATTTTTCAGGTTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCATTTAATTTCTTTTTGATGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTGAAATGCCCGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGACGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATTTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTGCGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4064714-4065102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031507.1 Dickeya fangzhongdai strain QZH3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4064714 28 100.0 32 ............................ ACATAGTCATAGGCCCCGAACGCGGTTTCGCT 4064774 28 100.0 32 ............................ CATTCGATGATCTCAGTAAGTTGGGCGTTATG 4064834 28 100.0 32 ............................ GTTGCCCTCGGCCAGACCATTCGGCTCATTAA 4064894 28 100.0 32 ............................ TACGACACCAACATCTGGCCGGCGCCGATCAC 4064954 28 100.0 32 ............................ GCAAGCCCAGTGTGCCAGCCAGCAAAAAAGCC 4065014 28 100.0 32 ............................ CGACCACTTGGCACGATTGCCACGTGATTACA 4065074 28 75.0 0 ............AC.......A..TCCC | A [4065095] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCTACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCCCCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAGCCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTTCGCCCGTTTATAACTATCTGATTTTTAAAGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCAGCCACTAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAAACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGTTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCCGAGACGCCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGTGCGCGCGGCGCGTTACCTTGCTGCGCCAACCCAAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4070615-4069865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031507.1 Dickeya fangzhongdai strain QZH3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4070614 28 96.4 32 ............G............... ACGACATGGATGCAACATACGCACAAAACGTA 4070554 28 96.4 33 ............G............... ACTGGGCTAAATTTTGTCTCCCCGATATTGTCA 4070493 28 96.4 32 ............G............... TACGTGCAGCACCGGACCCAGGTCAGCCAGGC 4070433 28 96.4 32 ............G............... GGAGTACACCCACGCACCGAACTGGTCCAGAA 4070373 28 100.0 32 ............................ GCATAGGATATTAGTCACATGAAAACCATCAA 4070313 28 100.0 32 ............................ GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 4070253 28 100.0 32 ............................ GCCGCCGGCGTGGTCGGTGCGGCGCTGCCGGA 4070193 28 100.0 32 ............................ CAATCCTCAACTTCGCGTTTTAACTCCCTGAT 4070133 28 100.0 32 ............................ ACTCAGGATAAGCCATGACGCTTTGTCTTATT 4070073 28 100.0 32 ............................ AACATCCATCGGGATGATCGCTGCAGCGAATC 4070013 28 96.4 32 ............G............... TTGTTGTGCGGGCTGCGTTGTTGAGGCCGCCA 4069953 28 96.4 32 ............G............... AGTCAGGAGTTACACAAAACTGTTCTGAAAGG 4069893 27 82.1 0 ....T........C.........-..CG | GG [4069870] ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGAACTGGCGGCGCTGGAGCAAACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATTACCGAGCCGCTACCGGTGCCGGCGGGGGCGAAGCACCGCATCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGACTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACTGAGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTCTCCAACGGACAAGCGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGTTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGAGCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGTTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCACTACA # Right flank : GGGTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGCTGTTTTTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCACCCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAGGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGCCGAACTCTTCGCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 4079168-4080098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031507.1 Dickeya fangzhongdai strain QZH3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4079168 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 4079228 28 100.0 32 ............................ TGGAAGATATCCGCGCCGCCTTACAACAGGCA 4079288 28 100.0 32 ............................ AAAGGTAGCACCGAGCACGCCATAAAGACGGA 4079348 28 100.0 32 ............................ GAATTCCCTGATACAATATCAACCTTATTATT 4079408 28 100.0 32 ............................ ACCCAGCGCCATTGATGCCCCGCCCATGATCA 4079468 28 100.0 32 ............................ GCTGATACGCTGATCCGCCGAGAAATCCCGGA 4079528 28 100.0 33 ............................ GAAAGAAATTACCCCCGAAGTCAGTAACTACAT 4079589 28 100.0 32 ............................ GTATTCAACAAACCGGGTGGCGGTCTGGTCTA 4079649 28 100.0 33 ............................ AGCGGCTTGAATCCGCATTTCGGGCAAATGTAA 4079710 28 100.0 32 ............................ GTTCTTGAAATGGATGCATCGACACAGAGGGC 4079770 28 96.4 32 ........T................... ATTGCGATGATTTTCACCAGGTTGCTATCCCC 4079830 28 100.0 32 ............................ TATGCCGCACAAAGACAAAGGCCATGCTGGTA 4079890 28 100.0 32 ............................ TTGCCATCAGCAATCTGGTCGGCAGTGTTCAA 4079950 28 100.0 32 ............................ TGACTGAAGAAGCCACCATACCAGAGCAGACA 4080010 28 92.9 32 ...........GA............... TCTTACCCTCATTCAGTGGTTTCATTCATGCC 4080070 27 82.1 0 ....................A..G.CG- | GG [4080091] Deletion [4080097] ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGCCGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGAGATACAAAGGGTTAGAGTCAACGAGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAACGACTCTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCCGTCCGACGGGCCGGCGACGGCGCTCCGTTGCTGCCCTGCGGCGTCAGGCGGAACGCGCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //