Array 1 223695-223130 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLZ01000001.1 Lactobacillus helsingborgensis strain Dan70 NODE_1_length_798274_cov_27.3664_ID_848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 223694 36 100.0 31 .................................... GCCCTGATTAGCATAGTCGCGATAAACTACG 223627 36 97.2 30 T................................... TTTAGGTGGTAAATCTTGGTATCTAGGTTA 223561 36 100.0 30 .................................... TAATCAGCTCCATTCATTTGATCAAAGGAT 223495 36 100.0 30 .................................... AAAGTAGCTAAAAACACCTCTTCATCATGG 223429 36 100.0 30 .................................... AAGAAAGCGCTGAACAAAAGTTTCTAGCAG 223363 36 100.0 30 .................................... TGAAAAGCACCAGTGTCACTACTGCTATTA 223297 36 100.0 30 .................................... TAAAATAACTGTGTTACATAATTCTATTTT 223231 36 100.0 30 .................................... TAAAAAGGGTATTGATTTTTACGAAAATGA 223165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.7 30 GTTTTAGATGGTTGTTAAATCGATGATGATTAGAAC # Left flank : CTGAAACTTTGGAAACTATCCGTCTTTCACGTAAGAACGGATACAACACCATGATTTCTCACCGTTCAGGTGAAACTGGTGACACATTTATCGCTGACTTTGCCGTTGCTGTTAACGGTGGTCAATTGAAGACTGGTGCCCCAGCTCGTTCAGAACGTGTTGAAAAGTACAACCGTTTGCTTGAAATCGAAGAAGAACTTGGCGAAGGCGAGCGTTTAGCTACATTCCCAGACAGTGTTGACAAAGACTAATTTGTTAATAAAAAAGCCTGCAATATTGCGGGCTTTTTTAGTGTCAAAATTTTTAAAAATGTGTTTTTAGCATAAATTCAAGATTTAAACATCTATGCTATAATTTAAGTAAACATTTAATTTCTAGAACTGCATTATCAGGATTAGATTAGCTACCTTTTTCCTGATATTGCTGCAAAAACTGGTCGTGTTTCTAATATTATTTGGTTTAATTCAACCATATTATTAAAATTTGATGATAAAACATCG # Right flank : TCTTTTTTAAGTGATGATACTTTAGACAAAAATAGTTTTAGAATAAATATTATTACAGATGTTAGGTTTGAAAACGAATAAAGTATTAGGTACTATATCTTTATCTTACAATTTAATTGATTTACCAGATAATATTAATAAACGAGAGCAAAAGCGTAATACTAAAGTAATCGGTGTTGAAGAAAAGCATCATATTTCAGAAACTGGTTTATCAAAGAATGCACCTTTTAATAAGATATTTGATTGAAAAACACTGTCAGATAATGAAATTATTAGTCAGATAGTAAATAAAGCAGAATTAACTTATTTTAATTTAAATAAACATCTTTTTGTTTTGTAAACAAAATAAATATAAGAAAATAGGGGTACTTAAAATGACATTTTGGGATTATATAGGTGCGTTTATAATTATTGTAATGGTCGCTACAATAGTTACATTAATAGTAACAGCTATCTTTGAATTTGTTTGGAATCATTTATTTTATTATATTTTTGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCGATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 314518-315148 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCLZ01000002.1 Lactobacillus helsingborgensis strain Dan70 NODE_2_length_346225_cov_41.1408_ID_850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 314518 36 97.2 30 .........A.......................... GGATAATAGGCCTTATTTTTCGTTAAGTAA 314584 36 100.0 30 .................................... TCTACAGTTTGTGCTGCTATTTCACGATCA 314650 36 100.0 30 .................................... AAATTTAGACAATTAGCTTGACTATTTTAG 314716 36 100.0 30 .................................... AGCTTTTGCGCTATCTCGGTTAATCTCCAG 314782 36 100.0 30 .................................... ACCAAACTAGTTATTTCATCGTCTGCTGGT 314848 36 100.0 30 .................................... ACAGTATTGATTTTTATAATGATCTTATTA 314914 36 100.0 30 .................................... CCTTAATTTAATCTATAAACTCTACACTTG 314980 36 100.0 30 .................................... TCTTACGCCAGACAAGTTCATCAATGCAGA 315046 36 97.2 30 ..............C..................... TGCAAACCAAACGGGCTACCTTTAATGCAT 315112 36 75.0 0 .................G..CA..AC..T...AT.T | C [315139] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.9 30 GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Left flank : ATCCGCTACTTAGTGGCGATATTACTAAAAAGTATATGACACATATTGTAAGTAGTTATATTACAAACTTGGATGAGGAGAATCGTAATAAGGTTATTAAATCTTTTTATAATTTAGAAACTACTTTGCATGATACGTTATTACTTGAAGACTTACCTTTAGAAATTACTTTTGATGAGGACCTGAAAAAGTTATTTAAACTAACTGATGTTCATTTGGACAAAACTATTTTAAATAGTCCGTATGGTATAATAGAAACAGTTTTAAGAATTCACCAAGTTTGTAATTTGAGGACGATCCCCGTTATTTGTAATGTAGCTCATTACATAGAAGAACGGGAGTGGCAAGAATTAGCTAGTCTTATTACGCAAATGAAATTGATTGTGATTTTAATCGAATTTACTGATGCTAAAAATTTGTATATACGTAAAGACATACCTTTTTATTATATTGATAAGGATCTAGTTGATTGGTATTAACTATATTATTAAATTTAGATT # Right flank : TCTTAAGAAAAGTACCCTAAAATAAAGAAAGGTTTTTGTTTGTTTACATGAAAAATATACTAAAAAGTAACAACAATAAACTATACCTTTTGTCAGTGATCACCGATAACTTGGGCAGTTCTTTAATGTCATTTGCATTGCCGTTAATGGTTCTTGATATTACTAAAAATGGTATCCACTTATCGATAATTTCCATTATTGAAACATTGCCCATTTTGATTTTAGGGCTTCCAGCAGGTGCGTTAACAGATAAATTCGATGTTAAAAGAATCCTCATTTTTAGTGATTTGATTAGGTTAATCGGCTATTTGATTCTTTCCGCATCCTTTCTATCCCATTTAACAGTCAATTGCATGATTTTCATTATTTATGCGGTATCACTTGTTGTCAGTGTAACCAACACGCTTAATACGGTGTCAGAAATTACTTTTGTTTCTTTTTTAGTAGAAAAGAAGGATTTTTCTGAATTAAACAGTCTGGTTTATGGCATACAATATGCA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //