Array 1 118943-121045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035055.1 Limosilactobacillus fermentum strain SRCM 103290 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118943 29 100.0 32 ............................. AGTAATTTCAACCTCAACCCGACGTTTTCGTT 119004 29 96.6 32 ............................C TCAACCTGAACAATATCTGATTGAAGGTAAGC 119065 29 96.6 32 ............................C GATAACTAAATAAAAGGAGGAAGCAATTATGA 119126 29 96.6 32 ............................C GATAACTAAATAAAAGGAGGAAGCAATTATGA 119187 29 100.0 32 ............................. TGTTTCTTCAATTCTTGCACGGCCCCCATGAG 119248 29 100.0 32 ............................. GAAATGGCATTTGGCTTGAAGTGGGGGAGGTG 119309 29 100.0 32 ............................. ATATAACCGCTTACATGTATAGCTAAAATAAA 119370 29 100.0 32 ............................. TATCGTGACATTTATTCATGGCTTACCAACCA 119431 29 96.6 32 ............................C AGTGCACGATCACGGTTGGCGACGATTCAACT 119492 29 96.6 32 ............................C TTACGAACATCACGGATGACCCCCGTATTTCA 119553 29 96.6 32 ............................C TTGCCCACAGCTTATATACTTCTTTCCAGTGA 119614 29 100.0 32 ............................. GGCAAGACGCGCCAGACGATCGGGGTATCGAA 119675 29 100.0 32 ............................. GTTGACCAAATTGACACGTGGGCAGACACTAG 119736 29 100.0 32 ............................. AAATTCAAGCTTCCATTTGTGGATCCCGGATG 119797 29 96.6 32 ............................C CGCCGTCGCAACTAACCCAATTCAATGGGAGA 119858 29 93.1 32 A...........................C TACACAACCTTATCGACCAAGCCAATGAAGAA 119919 29 96.6 32 ............................C GAAAATCAATCAAACGCTGCTGAACTGAAGGC 119980 29 100.0 32 ............................. TCATTGCTCGCATGTATGGGTTGCCCGCGATC 120041 29 96.6 32 ............................C AAACTGAAATGGTTCAATTCACGATTCACACT 120102 29 96.6 32 ............................C CGTTCCGTCATTGAGAAAACGGGCAACGTAAG 120163 29 100.0 32 ............................. AAGAAGCAGAAATACAGTCGTGCACTGCAACG 120224 29 100.0 32 ............................. AAGAAGCAGAAATACAGTCGTGCACTGCAACG 120285 29 96.6 32 ............................C TACTTAAAGGCGGCTAAAAAGCAAGTAGTTGA 120346 29 100.0 32 ............................. CCACCGTCGATGGTGGTAGCTCACGGCCATTA 120407 29 100.0 32 ............................. CTCATCGATCCAGTCAAATTGGCCGTCGATTA 120468 29 100.0 32 ............................. ATATGTACAAACAAAAAGGGGTGAGGACAATG 120529 29 96.6 32 ............................C ATCATCTTCCACCACAATGTAATCCATAGCAT 120590 29 96.6 32 ............................C CTAATCCCATTCAAAGTTCAAATTCCTGAAAA 120651 29 100.0 32 ............................. ACCTTAGGCCTTCTCAAGTCACACCTTTTCTT 120712 29 100.0 32 ............................. CGGTGGTAGCTTGGCTCAAAACGCTGCCGACG 120773 29 100.0 32 ............................. CAGCTTACAAACATCACGGATGATCCCCGCAT 120834 29 96.6 32 ............................C CGTTAACTCAATGATCAACAAAGAAATTAGGA 120895 29 100.0 32 ............................. TCTACCAGGTAATCGAACCACTGGTCCCCAGT 120956 29 96.6 32 ............................C GTTAACGAGATGTTTAAGACCGTCACGATTAG 121017 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 98.3 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGTATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGTTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TTTTTTTGTGGGACGAATTTACAATTGAAGTGCAACAAGTAAGAAGAAAATAAAAAAGAACTCATAGCCTGAGTCCTGTAAAATGAAGTCACCACAACAAACATCTAAAGGAGATCTTAGGCTATGAGTTCGTACAACCATCTTACCTTAAAAGACCGAGAATGCATACTATTAGGCGTCACTTTGAAGGACACCTATCAAGTTATTGCGCAGAGGATTGGGTGTTCTAAAGCCACCGTATCGCGCGAGATCAAACGCAATGGCGGTCGTAAGGCTTACTCAGCCGTCAAGGCCCAAGAGAACTATCAGGGACGTCGACTAAAAAGCCGACGTTCTAGGCTTCTAACTAACTTGAAGTTACGGGATTTTATCCTTCACTGTATTGTTCAACGTCAGTGGTCCCCGGAACAGATTTCAGGTCGTTTAGCCCACGAAAACAGCGAATGGCGTATCAGTTATAACACCATTTATCGTGGGATTGAACGCGATAATTTAGGCAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 575989-575357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035055.1 Limosilactobacillus fermentum strain SRCM 103290 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 575988 36 100.0 30 .................................... TTTAAGGGTTCACTTTATCAAGCCGTGCCT 575922 36 100.0 30 .................................... AAGGAGGAGCAACATGATTGAACTCACACC 575856 36 100.0 30 .................................... TTTCTTTGAAGTCAGCTAGATCAAGATTAA 575790 36 100.0 30 .................................... TCAGATGTAATAGCAGTGAAGTCAAGATCA 575724 36 100.0 30 .................................... CGTTCCTGGTCACTATACCGGATGAACATA 575658 36 100.0 30 .................................... TCAGATGTAATAGCAGTGAAGTCAAGATCA 575592 36 100.0 30 .................................... ATTGCGCCAGAATTAATTGTTGTTTATGCT 575526 36 100.0 30 .................................... GTGAACCTATTAAAGAGTTGGTTAGCTTAT 575460 36 97.2 30 .............................T...... TGATCAAGTTTCAAACTATGAAAACTTCGG 575394 36 80.6 0 .........................AG...A.AATG | C,G [575365,575367] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTACTCAGAGATGCAAGATTCTTTGTTCGAATTTGACTTGCCATTGGAGGTGCGGTATGACGAAAGTCTTTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACCCAAACAGGATATTTATCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAAAG # Right flank : TTGGTGTAAATTGAATTCCGCGAATTTATCATTTCACAAGCTTAAGCATACCGGCTTCTTCTGAATTGCCATCTTTTTCAATCCCGTGGTAAACGGTCATGTTTAAGTACCGTGGACCAGCAGCCCATTTTTCATTCTGTTCAATCAGTAGTGCTCCCATTAGTCGCAAGACGCTTAGATCATTCGGGAATATCCGGATTACCCGGTCGCGACGACGGATTTCTTGATTAACCCGCTCAATTGTATTATTCGTCCGGAGACGCTTCCTTAGCTCCTCTGGGAGCTGGTAAATCACCATTAATTCGTCAAAACTATTTTCTAATTTCTTCACCACCTTAGGGAACTCGGCCTGCCACTCTTTAACCAATTGGTCACGCCGTTCAACCGCTTGGTCGTACGTTGGAGCATTAAATAAATCTTTGAGTCGGTTAGCAACTTCTTTACGGTCCTTGAGTGCCAGAATACTTGTACAGTCATTACTAAAATGAAATTGACATCTC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //