Array 1 119661-119036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQY010000020.1 Streptomyces sp. TYQ1024 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 119660 30 96.7 31 .............................A GGCCCCGGTTGGCCGCCGTGTCCCTTGCGTC 119599 30 100.0 31 .............................. CTGTTGGTCGTTGCCGGGACCTTGCCAGAAT 119538 30 96.7 31 .............................T ACACCTACACGCGCGAGATGACCATCGAGGT 119477 30 96.7 31 .............................C GCGCTGGCAAGAACAAGGGCGAGAGCTGGGA 119416 30 96.7 31 .............................A AGCGCCTACGGAACGCGGCCTCCAACGCCTT 119355 30 100.0 31 .............................. ACGACCTCCTCGACGCCCTGTACGACGAGCG 119294 30 96.7 31 .............................T CCGGACCGTCCACGTCGCCAATTTCGGCACA 119233 30 90.0 14 .........................GTT.. ATCGGTCGGGCCCG GA [119205] Deletion [119190] 119187 30 96.7 31 A............................. GCGCCCCCAGCCCGGTCCTGCTCAGCTCCAG 119126 30 100.0 31 .............................. TCTTGGGGGAGACGCCGCTGAGCGCGCGGAT 119065 30 93.3 0 .............G...............A | ========== ====== ====== ====== ============================== =============================== ================== 11 30 96.7 29 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAGTACCTGGCCCCGATCTTCCAGTTCGCCCTCGGCCTCGCCGTCTTCCACGAGTCGATGCCGCCGGAGCGGTGGGCGGGCTTCGCGCTGGTGTGGCTGGCGCTGGCCATGCTGACCTGGGAGGCGATGCGCTCGGCGCGGACGACGCGGGTGGAACTGGCGGCGGCCCGCGAGCGGGTGGCGGCGGAGACGCCGGGGTCCGACGGGCCGGGTGTGGCGGCGGGCGCCACGGCCCCGGCGGAGGCGGCGCGGCCGGAGGCCGCCGTGGAGGCGGCGGCGGGTGTCGTGAGCGAGCCGGACTCGGCGGCGGGGCGTGGCGGGGCGTGAACGGGTGGGCGCGGGTCGGCGCTTGGCTTTACGATCTGGGGCCTGAGAACGCTGCCCGTGCGCTCAACGCAAAGCCCTGGAGGCCGGTTTGCTATGAAACAGTCCGAATGCCGGAGTCTGCGAAAGTGAGTAAAAACCGGCCTGCCGCTAGTTAAACGCGCAGGTCACGCCCT # Right flank : TCCAATGTCGGGTAACAGACCCAGCCCACCAGCGACCCCGCGCACGTGGGGGGCCCGAGTACAGGGCGGCGTCCTCGATCGCGACGCCGCGGTCCCCGCACGCGGGGGCACCCCCGCCCGATATCCGGATAGCGAACCCCCCTGTCCGAATTCCGCCCTTGACGGATCTCCGAAAACCCCTTGAACATCATGGGCACGTCAAAAGGACGGGAGCCCCCCATGCTTGATGTCCAAGGTCCCACCCTGCCCACCAGCCCCCGAAGACGCCGCCGTTCCGCCACCCTCCTGGCGTGCACCGCGGCCGCGGCCGCGACGCTCATCGGCGCGTCTCCGGCCCTCGCGGGGCCGGGCACGGCAACAGTGGCCACAGCGACAAGAACAACCACAACCGCCGACGCACCCGAGATACCCGCCGCCAACGTCAAGGCGCACCTCACCCAGCTCCAGTCGATAGCCAACGCCAACGGCGGCAACCGGGCCCACGGCCGGACTGGCTACAA # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 109838-109686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQY010000021.1 Streptomyces sp. TYQ1024 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 109837 30 100.0 31 .............................. CACTCCTTACGGAGCGACCGGCGCTTAGCGA 109776 30 93.3 31 ............................GT CAGGTGAGGACCGATGAACAGGATCAGCTCG 109715 30 80.0 0 ..........T.............AG.AAG | ========== ====== ====== ====== ============================== =============================== ================== 3 30 91.1 32 GTGGTCCCCGCGCGGGCGGGGGTGGTCCTC # Left flank : CTCATACCGCTCGCGCGGACGCACCGCGTCACCCTGGACCAGCTGATCGCCCCGCCGGCCACCGGCGACCCACGCGTTCACCTGCGTCCGCACCTACGGAAGCCCGGCAGCGTCCTCGTCCCGCTCACCCAGTACCCGGGGCGCGTCCAGGTCTTCAAACAGGTACTCGCACCGCGCGAGCCGAAGCTCGTCACGCATGTGGGGTACGAGTGGCTCTACGTCCTCGCGGGCGAGCTGCGCGTCATTCTGGGCGAGCGCGAATTCACCCTCCGGGTGGGCGAGGCAACGGAATTCGACACCAGCGAGCCGCACTGGTTCGGGCCGGCGGGGACGGAGGCGGTCGAGATCCTGCACCTGTTCGGGCCGCGGGGGGATCAGGCGGTGGTACGGACGGGGGGTGAGGGGGCGGTGGATTCGTGAGTTGGTACCGTGCGTGGACGGTACGTGGTGTGGTGCATGGGATCGCTGTCTGGCCGCTGTGAAGGCGCAGGTGGCGAAGG # Right flank : GTGGCGCCCAGCCTCAACGGCCCAGGCTCCCGGCCGTGCCGGACCGCCGGCAAGCCGTGGCGGTACCCGGGAGGGGATGGTCAGCACACCAGCCCGCCGTCGATCCCCACCACCTGCCCCGTGACGTAAGCCGACCGGTCGGACACGAGGAAGGACACCAGATCGGCCACCTCCTCCGGCGTCCCCGCCCGCCGGAGCGGGATCGCCTTGAGGTGTTCGTCGCGTTTCCGCTCCGCCAGGCCGTCCGTCATATCCGTCGCTATCATTCCCGGCGCCACGCAGTTGGCCCGCACTCCGAAGCGGCCCAGTTCCTTCGCGATCGACTTCGTGAATCCGATGATTCCCGCCTTCGACGCCGCGTAGTTCGCCTGGCCGACGCTGCCGTGGACGCCCGCCACCGACGAGACGGTGACGATGGTTCCGTGGTCGTGGCGCATGAGTGAGCGGGCGGCGGCGCGGCAGAGGTGGTAGGTGCCGTCGAGGTTGGTGCGGAGGACCGT # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGGGCGGGGGTGGTCCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGGGCGGGGGTGGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 386993-387388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQY010000002.1 Streptomyces sp. TYQ1024 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 386993 30 96.7 31 ...C.......................... ACTCGCTTCCCCGGCGGGCCCGTTTCCGAGG 387054 30 93.3 31 ............................TC CACGGGGCGCCCATCTTGACCTTGATCTCGG 387115 30 93.3 31 ............................CC GGCCACAGTGCCCGCAGCGACAGGAGCGGCG 387176 30 96.7 31 .............................A GGATGATGTCGGCTTCGGGCGTCTCCACCAA 387237 30 100.0 31 .............................. TCGACAAGGTCACCCATGCCCGCCTCAAGGC 387298 30 93.3 31 .........................C...C GCCCCTGGAGCGACATCACCGGCACGCCGGA 387359 30 73.3 0 ......T....A.......A..AACC..C. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 92.4 31 ATGGTCCCCGCGCACGCGGGGGTGGTCCGG # Left flank : AGGAGAACTCGGGCCTTGACGGCCCGTTCCGGCTGCTGAAGCTCATGGACGGCACGATGGTCGGACTCGGCGGGGTGCAGCTCTTCAGTCATGTGATCACGGACCACAAGCAAGTACAGGCCCTTGACCTGCTGTACGGAGTCATCCGGGCTCAGGCTCTCAGCCCACAGAAGTCACTTGCCTTCATCGAGAAAGTACTGGGAGAGACATGAAACTCAATGCCTCGGCTGAAAACGGTTCAGCGACGGGATGGATAAAGAGCAGCCACAGCGGCGCGAACGAGCCCTCGTGCGTCGAGGTGGCAGCGACCCCCGGCGTGGTCCGCGTGCGCGACTCCAAGAAGGAGGAAGGACCGTCCGTCGCGTTCCCGGCGGGGGCGTGGATCTCCTTCATGGGATTCGCTTCCGGCGGGTGACTCCACGGCTACCCGGGGGGGGAGCGGCCCTGAGGAAGTAAAGGAAAAAGCCGTCGCCCCCCAGGAATGATGCAGGTCACGAAGT # Right flank : GGCGTCACCACCCCAGCCCACAACCAAAGCGCGGGGCCCGCAGCCGACAACCGCGGGCCCCACCGCGCCCCTTGAGGCAGGAGACCCCGCCCGCCCCGCAGGGCTAAAGCACCGGCAGCATCTTCCGCAGCTCGAACGCCGTGACCTCCGACCGGTACTCCTCCCACTCCTGCTTCTTGTTGCGCAGGAAGAAGTCGAAGACGTGCTCGCCGAGCGTCTCCGCGACGAGCTCGCTCCGCTCCATCAGCTCGATGGCCTCGCCGAGGTTCTGCGGGAGGGGTTCGATGCCCATGGCGCGGCGTTCGGCGTCGGAGAGGGCCCAGACGTCGTCGTCGGCGCCGGCGGGGAGTTCGTAGCCTTCCTCGATGCCCTTGAGGCCGGCGGCCAGGAGGACCGCGTACGTCAGGTACGGGTTGGCGCCGGAGTCGATGGAGCGGACCTCGACGCGCGTGGAGCCGGTCTTGCCGGGCTTGTACATGGGGACGCGGATGAGGGCGGAG # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCACGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52253-51919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQY010000035.1 Streptomyces sp. TYQ1024 contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52252 29 100.0 32 ............................. ACCACCGCTTTCTGGAAGGCCACCGCCGAGCG 52191 29 100.0 32 ............................. CGGTCCAGAGTCCGTGGCAGGGGCCGCCAGTC 52130 29 100.0 32 ............................. CATGGCCAGCAGGCAAGGCAGCAGGCGCATCG 52069 29 100.0 32 ............................. CTCCGGTGACCGGCGAGCGGCTGGGTCCGCTG 52008 29 100.0 32 ............................. CACACGAGCGTGGCCGTCGAGCTGGAGCGGCT 51947 29 79.3 0 .............AC......C.TAC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.5 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CAAGGACTTCTTCCACCGTCGCGAAGGGCTCCAGCGGCGCCTGCTGCCCGGCATGCCCGCCTGCCCCGACCCGCAGGGCTGGGTGACCGAGCACGTGCTGTGGCTGGAGGACGTCGTCGGCATCGCCGACACCCTCCTCGCGGCCTGGCGAGGCTACCTCCCGGACAGCCACATGATCGCCCTCCTGGAGGCTTACGCCCACCAGGCCCGACCGGCTGTTCCGTACGCTGCCGACCTGCTTCGCGCATGGGAAGCCGAGGCTTTCGAGTCCTGCTCGGTGGAGGAGGCCGGGTGGTGGGAGGAGTGGCACATCCCGGAGACGGAGCGGCAGGCGCTCGACGCGCTGAATCACCGGCTGATTCCGATTGGCGCGATGCTGGTCACGGCGGTGGAGCGGGGGGCTGCGGCGGTGTGACGTGGGGCTTTTGAGTCTTATGTCGCGATCTGCGGAAGTGGGTAAAAACGGGGGTGGGTCCGGGTAGAGTCCCAGGTCGAGGCCT # Right flank : CTACTCCCCCTCTACCTCTCAACCCCCGCCCCCACCAACCGATACCCCCTCTTAGTAACCGTCCCCACCACACCCCCATAAGCCCCCAACGCCCCCCGCAGTCGCCCCACCGTCGCCTCCAGCGCCCGCAGCGCGTGCTGCTGTTGCTCGGGCTCCCGCCCGAGCACACCGCCCCCCGCCACCGGCCACAGCCGTCGCACCAGTTCCGCGCGGCTGAGGACGGTGCCCGGGCGTTCGGCCAGAGCGGCGAGCAGGGCCGCAGGCAGGGGCGGGAGGCGGAGGAGGGTGTCGCCGGTCAGGACGGCGGTGCCCTGGATGGTCAGGGGCCCCGCCGGGGTGGTGAGTTCGCGGCGGTGGCGGCGGGGGAGTTCGTCGGTGAGGAGGCGGACGAGGGAGCCGAGGCGGCCGCGGTCGGGCCAGGCGCAGGGGACTCCGGCCGCCACAAGAGGGCGGGCACACAGGGGGCCTATGCAGGCGGCCACCACGTCCTGGCGGAGGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13700-13062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQY010000029.1 Streptomyces sp. TYQ1024 contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13699 29 96.6 32 .C........................... ATCCGGAAGCCGGTCCGGCCCTGGCCGGTGTA 13638 29 100.0 32 ............................. GCCTGCGTGACCCGTTCGTGCCCGATCCGGTG 13577 29 100.0 32 ............................. GGGCAGCCGGTCGACCCGCAGGCCGCCCAGGA 13516 29 100.0 32 ............................. CCGATCAACCCGGCATGGGCGGCGGCGTAGTG 13455 29 96.6 32 ..............C.............. TCGCGGCGGACGCAGCGCAGGGGAAGGGCGGT 13394 29 93.1 32 ..............C..........C... GCGTCGTCCTCATACTCCGTCTTCCGCCTCTT 13333 29 82.8 32 .............GCA.C..T........ TGACGGCGCGCTCACGCGAACTCGGCTGGCCT 13272 29 86.2 32 .C.....T..........T.........G TCGCGCGCGAGCAGGTATTGGACGTAGTCGAG 13211 29 86.2 32 .C............C...A.........T GTTTCCAGGTGGCAGACAGTGCCGGCCCGTAA 13150 29 86.2 32 ...........CT.C..........C... GCCTCCCGCATGTGCTCCGCGACGCTGTCCTC 13089 28 86.2 0 ...C........-.C.........A.... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 92.2 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : ACGTCCCGATCGACTCCGTCGCCGCCGACTCCCTCGGCGCCCGGCGCGCGTCCGCCCTGGCCCTGCGGGTGGCGCAGCAGGGGGACGTGCACTCCGTCCTGGTCCCGGACAGCGAAATCGTGCGCGCCCGGCAGGGATTGTGGGACGAACGCCGCATCGCCGTGGAACACGGCGGGGCAACGGCGCTGGCGGCACTCACGGCTGGAGAGGCGGACTCCGCCTCTTACGGATACCGGCCGCGTGCGGGCGAGAAGGTGTGCGTGGTCCTGTGCGGCGCCAACACGGATCCCGCTACGCTCACTGGTCCGGCGAGTTGACTGTCGGCTGGGGCAGTTGCCCAGCGGGCGGGCCGCCGCAGTGTCCGTGGAAGGCGCGCGGCGGCAGGACAACTGCCGCCGGACGAAGGGGGGGAGCCGATGTCCGGCACATCCGCTTTGCCGGTTCCCGCGAAAGCGGGTAAAAACGCCGCCTCTCACAGATGAAACCGCAGGTCGGCTCCT # Right flank : CGCGCCTTGCCCCTCGGCTCGGCCGCCGGCCGGGACGTCGTTGTCCCGGCCGTCCCAGGGGATCCGGCACGACAAGAGTCGTCCCCACCAAACGCCGAAGGGCACCCTCACCCCGCCCTCCGAGCCGCCCGGTTCCTCCCGCCCGGCCCCGGCGACAGCGCAGCCGCGAGCTCGTCCAGGGCGTCCGTCAGAAGCTCAGCTCCCCGCACCGTGACCCCCGTATCGCCCTCCGTCGCCGCCCAAGCCGCCGCCCGTAGCCTCAGCGGCGTCCAGTCCAGCGGCCGGCGTTCACGCAGCGCCTCGACCGCGTCCGGCAGCAGCTCGCGCAGCGTTGCCGCGAAAGCCGCCGCGCCCGGGGACGGTGGAGCGTCCGGCTCCGGCAAGTGGGCTTCCATGAGCATGGTGACGCGGCCCATCGTCGCCAGGGCGGATTCCGCCGCCCGTTCGGCGCTGCGGGAGAGGCCGCGGTGGCGGACGGGTTCCTTCTGGGCGCGTTCGGC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22375-22101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQY010000029.1 Streptomyces sp. TYQ1024 contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 22374 30 100.0 31 .............................. CGAGCCCTTCGGGGTTGCTGCTGGCGCGCTT 22313 30 100.0 31 .............................. ACGCCGCCTTGGATGACGCGTGGGTGGACGT 22252 30 96.7 31 .............................A ACGGCATCCGCAAGGTGTGGAATGGCATCGC 22191 30 90.0 31 .........A...A...............T TGTACGCGCCAACGGACCGCTGAACGGTGGT 22130 30 93.3 0 .............AT............... | ========== ====== ====== ====== ============================== =============================== ================== 5 30 96.0 31 GTGGTCCCCGCGTGCGCGGGGGTGGTCCCG # Left flank : GCCCGAGCAACGCCCGGCGCCGGGGCAGCCGCAGCACGGCGACGGTGACGACCGGCCCGGCCACCGTGACGACCAGGGCGTACCAGGTGACCAGCGAGCCGACGGCGGGAAGCGGCTGACGCAATTCAGCTGCCAGCCCGGGCAGCAGCCCGACCATGACCCACTCGCTGGTCCCTATGAGGAAGACGCAGGCGGTGAGGGTGGCGAGAACGGCGGCGGGGTGGGGGTGGGAGTGAGAGCGGGAGTGGCGGCTGGTGGGGGGCTGGACTGGTGGTGCCGGAGTTGGGTGGTGGGCCGCCCCCGGTGGAGTGCTTGGGGCCATGTCGCGACGCTAAGGTCTGACATCGGTGTGAGAGTCAAGTGCGGGTGGGGGTGGCAGGGGGCGATGTGTCGCCGACTTCATCGAGAACTGCGCGTCGGGCGGTATGACGTTTTTGCCGGATTCCGAGAAGGTGAGTAAAAAGCCTGGCCCGCCGGACTAAAACACCAGGTGGCGCCCT # Right flank : CGGCGGGCGCGAGCGACACCAAGGTCGTGTCGTGGGCCCCGCATGCGCCGGGCCCGCAAGTCGGCGCCGCCGCCCGCCCCTCGGGCCAACAGGCAGGCAGCGGCGCCGTGAGCGGTCGCGGGCGGCACGTGCCCGCGACCGCACCGCGACCGACTACTTCAGCGCCGCGTCAGCCGTGCTGGAGACGCCGGAAGTGGCGGACTGGGCCGTGGAGTTGGCCGTGTCCTTCAGGGCGGTCACCGGGCCCGGCTCGGGGGTGGAGGGGGCGGAGGCGCCGGGGGGCGGCGGCTGCTCCTCCGAGGACGACGAGGAGCTGGACGAGCCGCCCTTGGGGTCGTACTTGTAGGTCTCGGTGACCTTGTGCTCCTTGGTGATCTGGCCCGGGGCCGGGGAGACGATCGCCACGGGCAGGGAGCCCAGGCCGTGGCCCTCGTGGTGGCGGCCGTGGTGGTCGTCCGCCATGGCCGTACCGGCCTGGCCCAGCACCATGCCACCGGCCA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGCGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 179568-180695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQY010000018.1 Streptomyces sp. TYQ1024 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 179568 30 96.7 31 .............................C CTGTCGTGGCCATCGTCGCGGCGATCCTGGC 179629 30 96.7 31 .............................G CTGTTGGTCGTTGCCGGGACCTTGCCAGAAT 179690 30 96.7 31 ............................G. GCGGGCGGCGCGGCGGGAGCTGCGTCGGCTG 179751 30 100.0 31 .............................. CCGCCCACCGCAGTTCCCCCACCCATTCCCG 179812 30 96.7 31 .............................C GAGGGACGTAGTAGGAGCTGTCGGTGAACTG 179873 30 100.0 31 .............................. GGCCATGCCCGAACGCCCCCTGCTAGCCCTG 179934 30 96.7 31 .............................G CGCTGGAGTACCACGTCAACGGCGTTGTCGA 179995 30 100.0 31 .............................. CCCAGCTCACGAAGACGGAGCACCAGGCCAT 180056 30 96.7 31 .............................G GTGCAAGGTCACACCATCCGAGGAGCCCCAT 180117 30 96.7 31 .............................C AGCTCACCGTCTCCGTCCCCGACGACACCGT 180178 30 96.7 31 .............................G CTCGGTTCTGCTCGCCCGATGGCTGGCTGAT 180239 30 100.0 31 .............................. CGAAACGATTCTTCGACGTCCTGCTGGAGCG 180300 30 96.7 31 .............................T GTGGCCCGGCATGCTCATTCAGATCCCCGCC 180361 30 93.3 31 ............................AC AAGATCACGACCGCGTTCGGGTACGACGCCG 180422 30 96.7 31 .............................C TGCTCGCCGTACGCGCCCCGCACCGCCAGGA 180483 30 96.7 32 .............................T GGTGATGGGCCGGACAAGGCACAGGTGAGCTG 180545 30 96.7 31 ............................A. CGACGCTGCCTCGGGAGCAGCGGATCGTGCT 180606 30 100.0 31 .............................. CCTCGGCGTAGGCGTCCTCCAGCTCCATGGC 180667 29 96.7 0 .................-............ | ========== ====== ====== ====== ============================== ================================ ================== 19 30 97.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : GGGACGAGCCGATCTGGTGACCGTCATCATCCTCACCAACTGTCCGGCCGGACTACGCGGATTCCTCACCCGCTGGCTGCTGGAGATCTCCCCCGGCGTCTTCATCGGCTCGCCCTCAGCCCGCGTGCGCGACATCCTCTGGGCCGAGGTCCGCCAGTACTCAGGCCACGGGCGCGCCCTCCTGGCCCACCAGACGAACAACGAGCAGGGCTACACCTTCCTCACACACGACCACGCCTGGCATCCCACGGACCACGAGGGCCTCACCCTCATCCACCGCCCTTCGACCACGACTCGCAGCGAAACTTCCGCAGAGCAGCGGTCTGTGCCCCGGCAGGGGTGGAGCAATGCCTCTAAGCGGCGACGGTTCGGGGGGCGTTGAGGTGCCGGGTGGTGGCGTTGCCCTGCCGAGCGAAATGAGAGCTATGCCCGTAAAGTCTGTCTCCGTGAAGATGAGTAAAAACTGGGTGCGGAGCGGATAAGGGTGCAGGTCAGCTCCT # Right flank : ATGTCCAGCAGCAAGCAGATGACGATCACCGCGGTGGCCCCGTCACGCTGGGGGGACCCCGGTAGCCGGGACCCCGCACCGCCGGAGGCGGATGCCCCGTGCGCTCGGAGCTTCGCCTACCGCCGCAACCCCAGCACCCGGTGCGGCCGGTACGGCGCCTCCAGGCGGGCGGTCTCGTCGTCCGTCAGGGTCAGGTCGACGGCGGCGACCGCGTCGTCCACGTGGGAGGTGCGGGTGGCGCCGATGATCGGGGCCGCCACGACCGGTTTGGCGAGGAGCCAGGCGAGGGCCACGCGGGCCGGGGGGAGGGCGCGGGTGGTGGCCACCGCGCGGACGGCGTCCACCACGTCGAAGTCCGCTTCCTCGTAGAGGCGGCGGGCGAGTTCGTCGTTGCCGGAGCGGAGGGTGCGGTGGGTGCCGGCGCGGTCGCGGGTGCCGGTGAGCATGCCGCGGGCCAGGGGGCTCCAGGGGATGCAGCTGACGTTCTCGTCGCGGCAGAG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //