Array 1 27060-27927 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZW01000014.1 Pseudomonas aeruginosa strain HUM-262 PA3_G4_NODE_48_length_37991_cov_29.2096_ID_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27060 28 100.0 32 ............................ ATGTAGCCGAGTGCGCTGCGACCGGCTTCGTA 27120 28 100.0 32 ............................ TGGCGACGTCCACTCGATGCTGCTGATGATTC 27180 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 27240 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 27300 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 27360 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 27420 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 27480 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 27540 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 27600 28 100.0 32 ............................ GTAGTGCCGCCAGCACAGCGCCTCGACGGTGT 27660 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 27720 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 27780 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 27840 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 27900 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37861-36452 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZW01000014.1 Pseudomonas aeruginosa strain HUM-262 PA3_G4_NODE_48_length_37991_cov_29.2096_ID_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37860 28 100.0 32 ............................ AGTCGGGCTGTTGAGTCTTTCCGCTAAAGCAT 37800 28 100.0 32 ............................ AAGAGAACGACTGCTGAATCAGCATGGTCATG 37740 28 100.0 32 ............................ CTGGCCAATGTCGATGCCCTCGCAGTGCAGGT 37680 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 37620 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 37560 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 37500 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 37440 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 37380 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 37320 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 37260 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 37200 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 37139 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 37079 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 37019 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 36959 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 36899 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 36839 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 36779 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 36719 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 36659 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 36599 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 36539 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 36479 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132-700 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZW01000013.1 Pseudomonas aeruginosa strain HUM-262 PA3_G4_NODE_52_length_30177_cov_39.975_ID_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132 28 96.4 32 .............C.............. TTGAGGCGGCGCTCAACCGCCTAGGCTTCTAT 192 28 96.4 32 .............C.............. ATGCTGAGCGAGCAGGCATAGCCACCCATCGC 252 28 96.4 32 .............C.............. ATTTCGCAGCCAGAGTGGCAAGACCATATCCA 312 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 373 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 433 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 493 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 553 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 613 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 673 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //