Array 1 115924-115740 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOP01000005.1 Ligilactobacillus ruminis strain BIOML-A6 scaffold5_size171932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 115923 36 97.2 38 ................T................... TTCCTCCTGAATTTGTGCTATAATATAAGTGATTCATA 115849 36 100.0 38 .................................... CTTCATTTCTTTTTTCCTTCTTTCAACTTTATGTACTT 115775 36 94.4 0 ...T.................G.............. | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 97.2 38 GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Left flank : TTTTCTTTGGCAATTTGTTATCGTTATTCTCAATGAGCGCAAAAAAGAATAAACTGAAAAAATCAGTCTCGACGCTGATGTCGATTTTGATGCAAAGAGGGTATTTTCAATGGAAGAAGAACAAAATCCGTTTCAAAAAATGGCGGAAAAGCATAAAAGCGAGCAAAGAAGAAAAGTTGAAACTGCATATGAAGCGTAAAAAGAACTGATTCAAGAATTTTGTGAGAAAAAGCGTGAGCTGAATTATCAAAAAGGATTAACTGAAGCAAACTTGCAATTGAGAACATATTTAACTATTTTAAAAGATTGGTAATCAAATGATATTGAAAAGATTGATTATGTATTTTATAATACCGACAGGGGATTTTTTCCCTATTTTATCCGTCATTACTTGGTTATAAAATGGACAAGTCTTTGAAAAGCTGGGTGTTTCTGGCTTGCTTTTTGGGCGTTATTTTATGGACGTACCCCCCATTCTGATGCCATTTTGATATTTGATG # Right flank : TAAATTATCGTAAAGAGAGTTTATACACAGCCTTTCTTCAGCCTGTACTGACCGAGGCTTGTAAATACTCGAATATTTATTCACAGTCAGACAATAATTCCATAAGCCGCACCTTGCAAACATCGCAGAAACAATTTTGCTCAATGCTCACAGATTATGACATTGTTTTTCGCAATTATCTGGCAAACGAGCTGTTTTCCGACCTGATATCGCCTGAAGCAGCATCCACTAAAAAGATTATTGAACACATGATTATCAAAATGCAGTGGATTATGATTGAATACACGGCTATACGTCAAAGTCTTTTCTTGTGGTACAGTCACAATGCCAATAGTTCGTTGACATATGAAACCATCAGAGAGCATATTGTCATCATCTCACGCATGACAGGATATGATGATGACATACGCGAATATCTTGAAAACAGCTTTGCAAAGCTCATATGGGATTGGGGGCTACGCCGCACTCATTATGGTAATTAGAAAATAATTACAAAGGAG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 171186-170608 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOP01000005.1 Ligilactobacillus ruminis strain BIOML-A6 scaffold5_size171932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 171185 28 100.0 33 ............................ TGACGACGTTACTATCAGCTGGCCACCGTCCGG 171124 28 100.0 33 ............................ CTCCCTTTGGGGTCGTTGGGCTATGACCTCAAA 171063 28 100.0 33 ............................ TTAAAGTGCGGGCTCTTTTTGCAACCGAAAGCG 171002 28 100.0 33 ............................ TCGATTATACAGGATTCATGACAACCACGGCAA 170941 28 100.0 34 ............................ TATTTTCGATGTCGTCATCCGCTTTTTGTCTCAG 170879 28 100.0 33 ............................ CACAAGAAGACGTGGAAGAGAGCATATCAGACC 170818 28 100.0 33 ............................ CAAGGTCTCCGTCAGCGTTTGTCTTGATGTCTA 170757 28 100.0 33 ............................ TTGGTGGTGGGATAATGAACATGATTTTCTCTA 170696 28 100.0 33 ............................ TGAAATACAAAATCACGTGCAGAACATATAGGG 170635 28 89.3 0 ........................T.AT | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.9 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TGCGGGGGTGATCCTACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGA # Right flank : GAAGTTATCATAGATAAATATATGAAAAAATTAATGAGACATACTGTTTGAATATTCCTTTTCTGACAATTTTAAACCGCCATAAAACGACAATTTAAATCCACCTTTGACAATAAAATTGATAAAATACTTAATTGCCGCAAATTTGCGGTAATTAGGCTTTTTTTAAAGCGTATACTCAAGTTATAGCTGAAATTTTCGTATTGTATTGGAGGAATTCAAAATGAAGGTTAAAACATTTTTATCTATAGCATGTTTGAGTCTTATGCTTGTCGGTTGTGGTAACGATACTGTTGACAATTCTGGCAAAAGTGTAGAATCAACCAATAATAAAGTTTCGAAAGTCAAACACAAGAAACCTAAAAAAGATCCGCGTGAGGTCGTAAATGGAGAACTTCTTAAAGTCGGACAATGGTGTAATGATGATGAGCAAGGGAAAATGGAGTTGTACAAAATTTGTGTGCCTGGGACGGTAATTGATGATGGATCAATCAAGTGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 171883-171672 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOP01000005.1 Ligilactobacillus ruminis strain BIOML-A6 scaffold5_size171932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 171882 28 100.0 33 ............................ TCAATGTACCAGCTGTTGCGGTTTTGTTTTGCT 171821 28 100.0 33 ............................ TGTTGCCCCCGTTTATCCGTCTGATAGCGTTAA 171760 28 100.0 33 ............................ TGTTGACATCTGGAATCTGCGTGGCAAATCAAC 171699 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTATGCGGGGGTGATCCTAATCGTATTGAATCCCTCGTTGATTCTAAAG # Right flank : TACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGAGTGTTCCCCGTGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //